ID:

dsi_20303

 Coordinate:

2r:4788040-4788189 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.5 -16.4 -16.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTTTACTATAATATAATACTGCCGTGTATATAATCAGCGAATATGTGTATCTAAAACCGTTAACCCACATTTGTGTATGGATGACCGGGTGCGGTCCGAACGAAGCGGATGATTCTGATTCTGCTTGGAAAGAGGCGGAAGCATCAATCAGTCCAGATTGCGTTTAACTTAGGTACTGATCTCCTACCTTATCGTTTCAGGACTCGAACAGTGCCGGGCAGCGTCAGCAGTCGACCAGTCAGTCGAAGTC
***********************************************************************************************...........((((((((.((.((((((((......)))))))).))..))))).)))......****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M023
head
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 O002
Head
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................ATCAATCAGTCCAGATTG.......................................................................................... 18 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................GGGACTCGAACAGTGCCGGGC............................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CTACCGTATCGTTTCAGGACT.............................................. 21 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................CCGAACGAAGCGGATGATTCT...................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GTATGGATGACCGGGTGC.............................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................ACTGATCTCCTACCTTATCGT....................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................AGGACTCGAACAGTGCCGGGCAGCGT.......................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACAGTGCCGGGCAGCGTCAGCAGT................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGCGTCAGCAGTCGACCAGTCAGTC...... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGCAGTCGACCAGTCAGT....... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................ACTCGAACAGTGCCGGAC............................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTCAGGACTCGAACAGTGCCGG................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GTATGGATGACCGGGTGCG............................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................GGTCCGAACGAAGCGGATGATTCTGA.................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................GGATGACCGGGTGCGGT........................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAACTTAGGTACTGATCTC................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TCAGGACTCGAACAGTGCCGGGCAA............................. 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGGACTCGAACAGTGCCGGGCAGCGTC......................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................AACGAAGCGGATGATTCTGATT.................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCCTACCGTATCGTTTCAGGACT.............................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTTTCAGGACTCGAACAGTGC.................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................GAACGAAGCGGATGATTCTGAT................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TCGAACAGTGCCGGGCAGCGTCAGCAGT................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................TGGAAAGAGGCGGAAGC............................................................................................................ 17 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............TAATACTGCCGGGTA.............................................................................................................................................................................................................................. 15 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................TGTGGAAGGATGAACGGGT................................................................................................................................................................ 19 3 20 0.15 3 0 0 0 0 0 0 0 0 1 0 0 0 2
.............................................................................................................TGAATCTGAATCTACTTGGAA........................................................................................................................ 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................CACGGTGCGGTACGAACGAA.................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................CGGATGATCCTGATT.................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................ATGACCAGGTGCGGAC.......................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAAATGATATTATATTATGACGGCACATATATTAGTCGCTTATACACATAGATTTTGGCAATTGGGTGTAAACACATACCTACTGGCCCACGCCAGGCTTGCTTCGCCTACTAAGACTAAGACGAACCTTTCTCCGCCTTCGTAGTTAGTCAGGTCTAACGCAAATTGAATCCATGACTAGAGGATGGAATAGCAAAGTCCTGAGCTTGTCACGGCCCGTCGCAGTCGTCAGCTGGTCAGTCAGCTTCAG
******************************************************************************************...........((((((((.((.((((((((......)))))))).))..))))).)))......*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................................................CGGCCCGTCGCAGTCGTCAGC................. 21 0 1 3.00 3 3 0 0 0 0 0
..........................................................................................................................................................................................................................GTCGCAGTTGTCAGCAGGTCA........... 21 2 1 1.00 1 0 0 1 0 0 0
.............................................................................................CGGGCTTGCTTCGCCTGCTAA........................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0
...............................................................................................GGCTTGCTTCGCCTACTAAGA...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0
..................................GTCGCTTATACACATAGATTT................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................TCGCAGTTGTCAGCAGGTCACTCAG...... 25 3 1 1.00 1 0 0 0 1 0 0
.....GATATTATATTAGGACGATAC................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 1
..................................................................................................................................................................................................AATGTCCTGAGCTTG......................................... 15 1 13 0.31 4 0 0 3 1 0 0
...........................................................................................................................................................................................................................TCGCAGTCATTACCTGGTC............ 19 3 8 0.13 1 0 0 1 0 0 0
...........................................................................................................................................................................................................................TCGCAGTCATTACCTGGT............. 18 3 20 0.10 2 0 0 2 0 0 0
................................................................................................................................................................................................GCAATGTCCTGGGCTTG......................................... 17 2 17 0.06 1 0 0 0 0 1 0
...................................................................................................................................................................................AGCGGACGGAATAGCAATG.................................................... 19 3 19 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................................................................CGCAGTCATTACCTGGTC............ 18 3 20 0.05 1 0 0 1 0 0 0

Generated: 04/23/2015 at 04:24 AM