ID:

dsi_20292

 Coordinate:

3l:21277221-21277404 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.5 -31.3 -31.2

Flybase annnotation

Antisense to three_prime_UTR [3l_21277382_21278554_+]; Antisense to CDS [3l_21277148_21277381_+]; Antisense to exon [3l_21277106_21278554_+]

No Repeatable elements found

Sense Strand Reads

GAATATTTGAAAAATACAGCGGAAGTCCTTTATATCCGATACATTGCGGGGTAAAACAACACGCATATCTTATTTAAAATAAAAGCGCGTTTTCGTACGTTTTTTGGATTCGCGACTTACCAACGCCAACGAATTCAGCATCCCGCTTTTCTAACGGCTTTTCACGAGCGCCGCCGTCGCCGCCGTAGCCACCAAACAAACAATAATAATGAAAAGCGCCAGACAAAAAGCTAAGAGCAAATTGGCCGACCAATATTGTAGTACGGCATTTGTTAATGTTAAGT
**************************************************(((....(((.(((....................))).)))....)))((((((((((((((((.........)))....)))))........((((((((....((((....(((.(((.((....)).))))))))))....................)))))))).....))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
..........................................................................TAAAATAAAAGTGCGTTTTCGTACGTT....................................................................................................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................................................................................................................................TGAAAAGCGCCAGACAAAAAGCTAAGA................................................ 27 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................................................................................................................................................TGTAGTACGGCATTTGTTAATGTTA... 25 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................TTCAGCTTCCCGCTTTTCTAACGGC.............................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................TCGTACGTTTTTTGGATTCGCGG......................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................TTGGATTCGCGACTTACCAACGCCA............................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................ATATTGTAGTTCCGCATTTGTT.......... 22 2 1 1.00 1 0 0 0 1 0 0 0
......TTAAAAAATACAGCGGAAGTCCTTTATA.......................................................................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0
......TTAAAAAATACAGCGGAAGTCCTTTA............................................................................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0
.......................................TACATTGCGGGGTAAAACAACACG............................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................ATGAAAAGCGCCAGACAAAAAGCTAAG................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................TTTAAAATAAAAGTGCGTTTTCGTA........................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TGAAAAGCGCCAGACAAAAAGCTAAGAG............................................... 28 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................TCGTACGTTTTTTGGATTCGCGA......................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................CGTACGTTTTTTGGATTCGCGACT....................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................TATTTAAAATAAAAGTGCGTTTTCGTA........................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................TATCTTATTTAAAATAAAAGTGCGTT................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................CGTTTTTTGGATTCGCGACTTACCAAC................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................ACATTGTAGAACCGCATTTGTT.......... 22 3 1 1.00 1 0 0 0 1 0 0 0
....ATTTGAAAAATACAGCGGAAGTCCT............................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0
.......................................................................ATTTAAAATAAAAGTGCGTTTTCGTA........................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0
..........AAAATACAGCGGAAGT.................................................................................................................................................................................................................................................................. 16 0 1 1.00 1 0 0 0 0 1 0 0
........................................................................TTTAAAATAAAAGTGCGTTTTCGTACGTT....................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................TTCGTACGTTTTTTGGATTCGCGACT....................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................TGGATTCGCGACTTACCAACGCCAAC.......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................CCGTCGTAGCCACCA.......................................................................................... 15 1 13 0.54 7 0 3 0 0 0 3 1
...............................................................................................TAAGGTATTTGGATTCGCGAC........................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 1 0 0
.............................................................................................................TCGCGACTTACCAAACC.............................................................................................................................................................. 17 2 10 0.20 2 1 0 0 0 0 0 1
.............................................................................................................TCGCGACTTACCAAA................................................................................................................................................................ 15 1 6 0.17 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................AGCCGATCAATTTTGTAGTA..................... 20 3 8 0.13 1 0 0 0 0 0 0 1
........................................................................................................................................................................CGCCGGCGTCGCCGCCCT.................................................................................................. 18 2 15 0.07 1 0 0 0 0 0 0 1
...................................................................................................................CTTACCAACCCCAACCA........................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1
.............................................................................................CGAACGTTGTTTGGAATC............................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

############################################################################################################################################################################################################################################################################################
CTTATAAACTTTTTATGTCGCCTTCAGGAAATATAGGCTATGTAACGCCCCATTTTGTTGTGCGTATAGAATAAATTTTATTTTCGCGCAAAAGCATGCAAAAAACCTAAGCGCTGAATGGTTGCGGTTGCTTAAGTCGTAGGGCGAAAAGATTGCCGAAAAGTGCTCGCGGCGGCAGCGGCGGCATCGGTGGTTTGTTTGTTATTATTACTTTTCGCGGTCTGTTTTTCGATTCTCGTTTAACCGGCTGGTTATAACATCATGCCGTAAACAATTACAATTCA
**************************************************(((....(((.(((....................))).)))....)))((((((((((((((((.........)))....)))))........((((((((....((((....(((.(((.((....)).))))))))))....................)))))))).....))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
.............................................................GCGTATAGAATAAATTTTATT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................ATGCAAAAAACCTAAGCGCTG........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................GAGCTGAATGGTTGCGGTTGC......................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GTTGTACCATCATGCCG................. 17 2 7 0.71 5 0 0 5 0 0 0 0 0 0
.......................................................................................................................................................................CGCGGCGGCACCGGCGACTTCG............................................................................................... 22 3 6 0.17 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................AGTGCTCGAGGCGGC............................................................................................................ 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................GCGGCGGCAGCGTCGGCAACGGA............................................................................................. 23 3 9 0.11 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................CGGCATCGGTGGAAAGTTTG................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................TTTAACGGGCTGGTT............................... 15 1 20 0.10 2 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................CGGCAGACGCGGCATCG............................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0 0
............................AAATATACGCTATGTGACGT............................................................................................................................................................................................................................................ 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GTATACCATCATGCCG................. 16 2 19 0.05 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................TCGTGGCGGAAGCGGTGGCA.................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................GCGGCGGGATCAGCGGTTT........................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................TTGCGGTTGTCTAGGTCGTA............................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................GGTTGCTTAAGACGT................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:21277171-21277454 - dsi_20292 GAATATTT------------G--A---AAAATACAGCGGAAG--TCCTTTATATCCGATACATTGC-GGGGTAAAACAACACGCAT-----ATCTTAT-------TTAAAATAAAAGC--------------GCGTTTTCGTACGTTTTTTGGATTCGCGACTTACCAACGCC-AACGAATTCAGCATCCCG--CTT----TTCTAACGGCTTTTCACGAG-----------CGCC------G------CCGTCGCCGCCGTAGC----CACCAAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAG-CTAAGAG---CAAATTGGCCGACCAATAT---TG----TAGT--ACGGCATTT---GTTAATGTTA--A----------------GT
droSec2 scaffold_11:1679650-1679933 - GAATATTT------------G--A---AAAATACAGCGGAAG--TCCTTTATATCCGATACATCGC-GGGGTAAAACAACACGCAT-----ATCTTAT-------TTAAAATAAAAGT--------------GCGTTTTCGTACGTTTTTTGGATTCGCGACTTAATAACGCC-AACGAATTCAGCTTCCCG--CTT----TTCTAACGGCTTTTCACGAG-----------CGCC------G------CCGTCGCCGCCGTAGC----CACCAAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAG-CTAAGAG---CAAATTGGCCGACCAGTAT---TG----TAGT--ACGGCATTT---GTTAATGTTA--A----------------GT
dm3 chr3L:21763321-21763595 - GAATATTT------------G--A---AAAATACAGCGGAAG--TGGTCTATATCGGATACATTGC-GGGGTAAAACAACACGCAT-----ATCTTAT-------TTAAAATAAAAGT--------------GCGTTTTCGTACGTTTTTTTGCTTCGCGACTTACCAACGCC-AACGAATTCAGCTTCCCG--CTT----TTCTAACGGCTTTTTACGGG-----------CGCC------G------CCGTCGCCGCC-------------AAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAG-CAAAGAA---CAAATTGGCCGACCAGTAT---TG----TAGT--AAGGCATTT---GTTAATGTTA--A----------------GT
droEre2 scaffold_4784:21421625-21421902 - GAATATTT------------G--G---AAAATACAGCGGAAA--TCCTCGATATCCGATAAATCGC-GGGGTGAAACAACACGTAT--GATATCTTAT-------TTAACATATAAGT--------------GCATTTTCGAACGTTTTATTGCTTCGCGACTTTCCAACGCC-AACGAACTCAGCACCGCG--CTT----TTCCAACGGCTTTTTACAAG-----------CGCC------A------CCGTCGCCGCC-------------GAACAAACAATAATAAAGA---AAAGCGCCAGACAAAAAG-CTAAGCG---CTAATTGGCCGACCAGTAT---TG----TAGT--ACGGCATTT---CTTAATGTTT--A----------------GT
droYak3 3L:18752235-18752512 + GAATATTT------------G--T---AAAATACAGCGTAAA--TCCTCGATATCCGATAAATCGC-GGGGTAAAACAACACGCAT--CATATATTAT-------TTACCAAAAAAGT--------------GAATTTTCATAGGTTTTATTGCCTCGCGACTTTCCAACGCC-AACGAACTCAGCATCGCG--CTT----TTCCAACGGCTTTTCACAAG-----------CGCC------G------CCGTCTCCGCC-------------GAACAAACAATAATAATGA---AAAGCGACAGACAAAAAG-CTAAGAG---CTAACTGGCCGACCAATAG---TG----TAGT--ACGGCATTT---TTTAATGTTA--A----------------GT
droEug1 scf7180000409472:590157-590453 - TAATTCCCATAAAATGATTTA--AGCTAAAATATAGCGGAAA-ACACTCGATATCCGATAAATCGCCGGGATAAGACAACAGAGAT--AATATCGTAT-------TTGCAGTAAAATAAAGTGGATATTTTAGTATTTTTGTTCGCTTT-CCGCCACCCAACTTTCTAACGTC-AACGATTTCAGCTGCGCG--CTT----TTCCAACGGCTTTCCGC-A-----G------AGCC------G------CCGTCGCCGCC-------------GAACAAACAATAATAATGA---AAAGCGCCAGACGAAAAC-CGAAGAG---CTAATTGACCAACCAGTAT---TATAGC----------CATTT---GTTAAT------------------------T
droBia1 scf7180000302377:1541808-1542047 + AAGTATCT------------G--T---CAAATACTG------------CGATATCCGATAAATCGCCGGGAG--AATAACACAGGC--GAAGG-AGCC-------TTGCAGTGC-AGACAGTGGATACCAA-G-CCCCTGGTGCGCCCC-TCGCATCGCCGCTCTCTAACGAC-GACGGG----ACTGCACG--CTT----TTCCGAC-------------------------GCC------G------CCGTCGCCGC---------------GCCAAACAACAATAATGA---AAAGCGCCAGGCGCGAGC-AGACGAG---CTAAGTGGCCA----GTGC-----AAGC----------AGTTT---TTCCGC------------------------A
droTak1 scf7180000415338:42217-42499 - AAATATTT------------AAG----AAAATATAGCGAAAC-ATACTCGATACCCGACTAATCGCCGGGATAATCCAACTCAAAT--AATGTCCGAA-------TTGCAGTAAAAGTTGATGGATATTTTAGTATTTTTGTATGCTTT-TCGCAACGCAACTTTCTAACGGC-AACGAATTCAGCTGCGCG--CTT----TTTCAACGGCTTTCCAC-T-----G------AGCC------G------CCGCCGTCGCC-------------GAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-CGAAGAG---CTAATTGCCCGACCAGTAT---TATAGC----------CATTT---GTTAAT------------------------T
droEle1 scf7180000491199:1118500-1118790 + AAATATTA------------ATG----AAAATATAACAAAAC-GCACTCTATAACCGATTAATCGCCGGGATAAAACGGCACAAAT--AGTGTCTAAT-------TTGCAGTGAAAGATTATGGATAATTCGGTGTTTTTGTATGTTTT-TCGCCAACCAACTTTCTAACGACCCCCAAACTCAGCTGCGCG--CTT----TTTCAAAGGCTTTTCACAG---CAG------AGCC------G------CCGTCGCCGCC----------GCCGAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-CGAAGAG---CTAATTGGCCAACCAGTAT---TA----TA----TCGAATTTT---GTTAA-------------------------T
droRho1 scf7180000766576:9902-10179 - AAATGTTA------------AAG----AAAATATAGTGAATC-GTACTCGATATTCCATTAATCGCCGGGATAAAACAGCACAAAT--GATGTCTGAT-------TAGCAGTGAAAGATAGCGGACATTTGATTATTTTTGTATGTTCA-TTGCATGCCAACTTTCTAACGGC-CGCGAACTCAGCTGCGCG--CTT----TTTCAACGGCTTTCCAC-A-----G------AGCC------G------CCGTCGCCGCC-------------GAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-CGAAGAG---CTAATTGGCCGACCAGTAT---TA----TA-----------------TTAATATT---------------------T
droFic1 scf7180000453831:602930-603219 - ATACATTT------------GAT----ATAATAAAACGAAAACGCTCTCGATATCCGATAAATCGCCGGGATAAAAGAACACAAAT--ATTGTTTGAT-------TTCGAGTAAAGGATTGTGGATATTTTGGTATTTTTGTATGTTTT-CCGCCACCCAACTTTCTAACGGC-AACGAATTCAGCTGCGCG--CTT----TTCCAACGGCTTTCTAT-A-----G------AGCC------G------CCGTCGCCACC-------------GAATAAACAATAATAATGA---AAAGCGCCAGACAATAAC-CGAAGAG---CTAATTGGCCGACCAGTAT---TAAAGC----------CACTC---GATAATTATA--A----------------AT
droKik1 scf7180000302272:730534-730827 + AAATACCC------------CGGA---AAAGTCCAACGAAAA--ACAACGGTATCCGATAAATCGCCGGGATAAAATAACACAAAATTAATAT--TGTTCAGTGGCTGCAGGAAA--ACCAAAGTTAATACAACATTATAACATATTTA-TTG------------CCAACGCT-AAA------AGC-----GGTCTTTGTCCCCAAACGACTTTCCACAAGCACAAAGC---CGCC---GCCGTCGTCTCCGT---CGTCGAAA-TCGCCGCCGTGCAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-CGAAAAG---CCAATTAGCTC-----------TTTGGC----------CATTT---G--AATGCCG--T----------------TT
droAna3 scaffold_13337:4080605-4080713 - G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCGTCGCCG-CACCGCCGCC-------------GCCGCACAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-C-AAAAG---CTAATTGGCCGC-AA----------------------------------ACCGCTA--AGTGATTAATTAATTCCAA
droBip1 scf7180000395450:213242-213337 - AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACCGTCACCG-CACCGCCGCC-------------GCCGCACAAACAATAATAATGA---AAAGCGCCAGACAAAAA--CTAAAAG---CTAATTGGCCGC-AA----------------------------------ACCGCTA--A----------------GT
dp5 XR_group6:4445913-4446056 + CGCTTTTC------------CG-----GAA-------------------------------ATCGTTGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------GC---CGCC------G------ACGTCGTCGTCGTAGTTGT-GTCTACAAAAACAATAATAATAA---AAAGCGCTAGACAAAAGTGCTACTAG---GTAATTGGCTGT-AATTAT---TT----TTGCCGACAGATTTT---TTTTTTGT----G----------------GT
droVir3 scaffold_13049:24159124-24159296 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTAACGGT-AACGGGTTT-GCTGCGCG--CTG----TCGTAGA---------------CAAAGCTTGCGCC------G------TTGTCGCCGCCGTAGCTTTTTGCTACACAAACAATAATAATAAAAAAAAGCGCTAGACAAAATA-ATAATAGTTGCTAATTGGCTGC-CATTGTCAGTGTAGC----------TACTG---GTGCTCTGTC--C----------------GT
droMoj3 scaffold_6680:18781061-18781223 + A----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTAACGGT-AACGGGTTT-GCAGCGCG--TCG----TTTAAGC---------------CAAAGCTTGCGTC------G------CCGTTGCCGCCGTAGCTTTCTGCTACACAAACAATAATAATAAAAAAAAGCGCTAGACGAAATA-ATAATAGTTAATAATTGGCTGC-CATTGTTGCTTCAGC----------T----------ACTGTTA---------------------
droGri2 scaffold_15110:9569808-9569934 - G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTC------T------CCGTCGCCGCCGTAGCTGTCTGCTACACAAACAATAATAATAAAAAAAAGCGCTAGACGAAATA-ATAATACTTGTTAACTGACTC------AC---TGCAGC---T--ACTGCAATTGTTATTTATGTTAGCA----------------GT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAATATTT------------G--A---AAAATACAGCGGAAG--TCCTTTATATCCGATACATTGC-GGGGTAAAACAACACGCAT-----ATCTTAT-------TTAAAATAAAAGC--------------GCGTTTTCGTACGTTTTTTGGATTCGCGACTTACCAACGCC-AACGAATTCAGCATCCCG--CTT----TTCTAACGGCTTTTCACGAG-----------CGCC------G------CCGTCGCCGCCGTAGC----CACCAAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAG-CTAAGAG---CAAATTGGCCGACCAATAT---TG----TAGT--ACGGCATTT---GTTAATGTTA--A----------------GTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................TGA---AAAGCGCCAGACAAAAAG-CTAAGA.................................................................................2712.00200000000020000000
..........................................................................................................................................................................................................................................................................................................................................................TG----TAGT--ACGGCATTT---GTTAATGTTA--...................2511.00100000000010000000
..........................................................................................................................................TCGTACGTTTTTTGGATTCGCGG................................................................................................................................................................................................................................................2311.00100100000000000000
.....................................................................................................................................................TTGGATTCGCGACTTACCAACGCC-A..................................................................................................................................................................................................................................2511.00100000000010000000
..........................................................TACATTGC-GGGGTAAAACAACACG..............................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
................................................................................................................................................................................................................................................................................................ATGA---AAAGCGCCAGACAAAAAG-CTAAG..................................................................................2711.00100000000010000000
.................................................................................................................................................................................................................................................................................................TGA---AAAGCGCCAGACAAAAAG-CTAAGAG---.............................................................................2811.00100000001000000000
..........................................................................................................................................TCGTACGTTTTTTGGATTCGCGA................................................................................................................................................................................................................................................2311.00100100000000000000
...........................................................................................................................................CGTACGTTTTTTGGATTCGCGACT..............................................................................................................................................................................................................................................2411.00100000000010000000
...............................................................................................................................................CGTTTTTTGGATTCGCGACTTACCAAC.......................................................................................................................................................................................................................................2711.00100100000000000000
....ATTT------------G--A---AAAATACAGCGGAAG--TCCT.................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...........................AAAATACAGCGGAAG--T....................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
.........................................................................................................................................TTCGTACGTTTTTTGGATTCGCGACT..............................................................................................................................................................................................................................................2611.00100000000010000000
......................................................................................................................................................TGGATTCGCGACTTACCAACGCC-AAC................................................................................................................................................................................................................................2611.00100000000010000000
...........................................................................................................................................................TCGCGACTTACCAAA.......................................................................................................................................................................................................................................1560.17100000000010000000
droSec2
GAATATTT------------G--A---AAAATACAGCGGAAG--TCCTTTATATCCGATACATCGC-GGGGTAAAACAACACGCAT-----ATCTTAT-------TTAAAATAAAAGT--------------GCGTTTTCGTACGTTTTTTGGATTCGCGACTTAATAACGCC-AACGAATTCAGCTTCCCG--CTT----TTCTAACGGCTTTTCACGAG-----------CGCC------G------CCGTCGCCGCCGTAGC----CACCAAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAG-CTAAGAG---CAAATTGGCCGACCAGTAT---TG----TAGT--ACGGCATTT---GTTAATGTTA--A----------------GTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....ATTT------------G--A---AAAATACAGCGG..........................................................................................................................................................................................................................................................................................................................................................................1811.0011000
...TATTT------------G--A---AAAATACAGCGGAAG--TCC..................................................................................................................................................................................................................................................................................................................................................................2511.0010001
.....TTT------------G--A---AAAATACAGCGGAAG--TCCT.................................................................................................................................................................................................................................................................................................................................................................2411.0010001
...........................AAAATACAGCGGAAG--TCCTT................................................................................................................................................................................................................................................................................................................................................................2011.0010001
....ATTT------------G--A---AAAATACAGCGGAAG--TC...................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.....TTT------------G--A---AAAATACAGCGGAAG--.....................................................................................................................................................................................................................................................................................................................................................................2011.0010001
dm3
GAATATTT------------G--A---AAAATACAGCGGAAG--TGGTCTATATCGGATACATTGC-GGGGTAAAACAACACGCAT-----ATCTTAT-------TTAAAATAAAAGT--------------GCGTTTTCGTACGTTTTTTTGCTTCGCGACTTACCAACGCC-AACGAATTCAGCTTCCCG--CTT----TTCTAACGGCTTTTTACGGG-----------CGCC------G------CCGTCGCCGCC-------------AAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAG-CAAAGAA---CAAATTGGCCGACCAGTAT---TG----TAGT--AAGGCATTT---GTTAATGTTA--A----------------GTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................ATACAGCGGAAG--TGGTCTA..............................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000001000000000000000000000
....................G--A---AAAATACAGCGGAAG--TG...................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................A---AAAATACAGCGGAAG--TGGTCTA..............................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...............................TACAGCGGAAG--TGGTCTA..............................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000
......................................GAAG--TGGTCTATATCGGA.......................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T------------G--A---AAAATACAGCGGAAG--TGG..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................T-------TTAAAATAAAAGT--------------GCGTTTTCGT...................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TG----TAGT--AAGGCATTT---GTTAATGTT......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GCCGACCAGTAT---TG----TAGT--AAGG.......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AATAATGA---AAAGCGCCAGACAAAAAG-T......................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CATTGC-GGGGTAAAACAAC.................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AATACAGCGGAAG--TGGTCT...............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TTGGCCGACCAGTAT---TG----TAGT--...........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................GTCTATATCGGATACATTGC-..............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...............................................................TGC-GGGGTAAAACAACACGCA............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T------------G--A---AAAATACAGCGGAA........................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................ACCAACGCC-AACGAATTCAGCTT.....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AGTAT---TG----TAGT--AAGGCATTT---GTTAATG........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT------------G--A---AAAATACAGCGGAAG--TGGT.................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................G--A---AAAATACAGCGGAAG--TGG..................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AACAATAATAATGA---AAAGCGCC..................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATATTT------------G--A---AAAATACAGCGGAAG--.....................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.......................A---AAAATACAGCGGAAG--TG...................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...............................................................TGC-GGGGTAAAACAACACG..............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AAAATACAGCGGAAG--TGGTCTA..............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
....ATTT------------G--A---AAAATACAGCGGAAG--TGG..................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
....................................................ATCGGATACATTGC-GGGGTA........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TAT-------TTAAAATAAAAGT--------------GCGTTTTCGTA..................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................CCAGTAT---TG----TAGT--AAGGCATTT---GT.............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAATACAGCGGAAG--TGGTCTATA............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TTTTCGTACGTTTTTTTGCTT.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GCC-AACGAATTCAGCTTCCCG--C..............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................GATACATTGC-GGGGTAAAACAA..................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
....ATTT------------G--A---AAAATACAGCGG..........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
....................................................ATCGGATACATTGC-GGGG..........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GC-GGGGTAAAACAACACG..............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................GCGACTTACCAACGCC-AA.................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................AGCGGAAG--TGGTCTATATCGGATACATT.................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................TAATGA---AAAGCGCCAGACAAAAAG-C......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
GAATATTT------------G--G---AAAATACAGCGGAAA--TCCTCGATATCCGATAAATCGC-GGGGTGAAACAACACGTAT--GATATCTTAT-------TTAACATATAAGT--------------GCATTTTCGAACGTTTTATTGCTTCGCGACTTTCCAACGCC-AACGAACTCAGCACCGCG--CTT----TTCCAACGGCTTTTTACAAG-----------CGCC------A------CCGTCGCCGCC-------------GAACAAACAATAATAAAGA---AAAGCGCCAGACAAAAAG-CTAAGCG---CTAATTGGCCGACCAGTAT---TG----TAGT--ACGGCATTT---CTTAATGTTT--A----------------GTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................TATCCGATAAATCGC-GGGGTGA.......................................................................................................................................................................................................................................................................................................................................2213.0030020100
...................................................TATCCGATAAATCGC-GGGGTGT.......................................................................................................................................................................................................................................................................................................................................2212.0020000110
..............................ATACAGCGGAAA--TCCTCGA..............................................................................................................................................................................................................................................................................................................................................................1911.0010000010
......TT------------G--G---AAAATACAGCGGAAA--.....................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.....TTT------------G--G---AAAATACAGCGGAAA--T....................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.............................AATACAGCGGAAA--TCCTC................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
................................................CGATATCCGATAAATCGC-..............................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................G---AAAATACAGCGGAAA--TC...................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
GAATATTT------------G--T---AAAATACAGCGTAAA--TCCTCGATATCCGATAAATCGC-GGGGTAAAACAACACGCAT--CATATATTAT-------TTACCAAAAAAGT--------------GAATTTTCATAGGTTTTATTGCCTCGCGACTTTCCAACGCC-AACGAACTCAGCATCGCG--CTT----TTCCAACGGCTTTTCACAAG-----------CGCC------G------CCGTCTCCGCC-------------GAACAAACAATAATAATGA---AAAGCGACAGACAAAAAG-CTAAGAG---CTAACTGGCCGACCAATAG---TG----TAGT--ACGGCATTT---TTTAATGTTA--A----------------GTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................TTCCAACGCC-AACGAACTCAGCATCG...................................................................................................................................................................................................................26210.0020000000000020
...........................................................................................................................................................................................................................................................................................................................TAAGAG---CTAACTGGCCGACCAATAG---T......................................................2620.50101000000000
.....................................................................................................................................................................................TCAGCATCGCG--CTT----TTCCAACGGCTT............................................................................................................................................................................................2620.50100100000000
..ATATTT------------G--T---AAAATACAGCGTAAA--TCC..................................................................................................................................................................................................................................................................................................................................................................2620.50100000010000
........................................................GATAAATCGC-GGGGTAAA......................................................................................................................................................................................................................................................................................................................................1820.50100100000000
..........................................................................................................................................................................GCC-AACGAACTCAGCATCGCG--CTT----C.......................................................................................................................................................................................................2520.50100100000000
.......T------------G--T---AAAATACAGCGTAAA--TCCTCGATA............................................................................................................................................................................................................................................................................................................................................................2720.50101000000000
.......................T---AAAATACAGCGTAAA--TCCTCGATATC..........................................................................................................................................................................................................................................................................................................................................................2720.50101000000000
.............................................................................................................................................................................................................................................................................................................ACAGACAAAAAG-CTAAGAG---CTAAC........................................................................2420.50100100000000
................................................................................................................................................GTTTTATTGCCTCGCGAC...............................................................................................................................................................................................................................................1820.50110000000000
...............................TACAGCGTAAA--TCCTCGATATCCGA.......................................................................................................................................................................................................................................................................................................................................................2520.50101000000000
....ATTT------------G--T---AAAATACAGCGTAAA--T....................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
..........................................................TAAATCGC-GGGGTAAAACAACACGC.............................................................................................................................................................................................................................................................................................................................2520.50101000000000
droEug1
TAATTCCCATAAAATGATTTA--AGCTAAAATATAGCGGAAA-ACACTCGATATCCGATAAATCGCCGGGATAAGACAACAGAGAT--AATATCGTAT-------TTGCAGTAAAATAAAGTGGATATTTTAGTATTTTTGTTCGCTTT-CCGCCACCCAACTTTCTAACGTC-AACGATTTCAGCTGCGCG--CTT----TTCCAACGGCTTTCCGC-A-----G------AGCC------G------CCGTCGCCGCC-------------GAACAAACAATAATAATGA---AAAGCGCCAGACGAAAAC-CGAAGAG---CTAATTGACCAACCAGTAT---TATAGC----------CATTT---GTTAAT------------------------TSizeHit CountTotal NormTotal
No Reads
droBia1
AAGTATCT------------G--T---CAAATACTG------------CGATATCCGATAAATCGCCGGGAG--AATAACACAGGC--GAAGG-AGCC-------TTGCAGTGC-AGACAGTGGATACCAA-G-CCCCTGGTGCGCCCC-TCGCATCGCCGCTCTCTAACGAC-GACGGG----ACTGCACG--CTT----TTCCGAC-------------------------GCC------G------CCGTCGCCGC---------------GCCAAACAACAATAATGA---AAAGCGCCAGGCGCGAGC-AGACGAG---CTAAGTGGCCA----GTGC-----AAGC----------AGTTT---TTCCGC------------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
AAATATTT------------AAG----AAAATATAGCGAAAC-ATACTCGATACCCGACTAATCGCCGGGATAATCCAACTCAAAT--AATGTCCGAA-------TTGCAGTAAAAGTTGATGGATATTTTAGTATTTTTGTATGCTTT-TCGCAACGCAACTTTCTAACGGC-AACGAATTCAGCTGCGCG--CTT----TTTCAACGGCTTTCCAC-T-----G------AGCC------G------CCGCCGTCGCC-------------GAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-CGAAGAG---CTAATTGCCCGACCAGTAT---TATAGC----------CATTT---GTTAAT------------------------TSizeHit CountTotal NormTotal
No Reads
droEle1
AAATATTA------------ATG----AAAATATAACAAAAC-GCACTCTATAACCGATTAATCGCCGGGATAAAACGGCACAAAT--AGTGTCTAAT-------TTGCAGTGAAAGATTATGGATAATTCGGTGTTTTTGTATGTTTT-TCGCCAACCAACTTTCTAACGACCCCCAAACTCAGCTGCGCG--CTT----TTTCAAAGGCTTTTCACAG---CAG------AGCC------G------CCGTCGCCGCC----------GCCGAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-CGAAGAG---CTAATTGGCCAACCAGTAT---TA----TA----TCGAATTTT---GTTAA-------------------------TSizeHit CountTotal NormTotal
No Reads
droRho1
AAATGTTA------------AAG----AAAATATAGTGAATC-GTACTCGATATTCCATTAATCGCCGGGATAAAACAGCACAAAT--GATGTCTGAT-------TAGCAGTGAAAGATAGCGGACATTTGATTATTTTTGTATGTTCA-TTGCATGCCAACTTTCTAACGGC-CGCGAACTCAGCTGCGCG--CTT----TTTCAACGGCTTTCCAC-A-----G------AGCC------G------CCGTCGCCGCC-------------GAACAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-CGAAGAG---CTAATTGGCCGACCAGTAT---TA----TA-----------------TTAATATT---------------------TSizeHit CountTotal NormTotal
No Reads
droFic1
ATACATTT------------GAT----ATAATAAAACGAAAACGCTCTCGATATCCGATAAATCGCCGGGATAAAAGAACACAAAT--ATTGTTTGAT-------TTCGAGTAAAGGATTGTGGATATTTTGGTATTTTTGTATGTTTT-CCGCCACCCAACTTTCTAACGGC-AACGAATTCAGCTGCGCG--CTT----TTCCAACGGCTTTCTAT-A-----G------AGCC------G------CCGTCGCCACC-------------GAATAAACAATAATAATGA---AAAGCGCCAGACAATAAC-CGAAGAG---CTAATTGGCCGACCAGTAT---TAAAGC----------CACTC---GATAATTATA--A----------------ATSizeHit CountTotal NormTotal
No Reads
droKik1
AAATACCC------------CGGA---AAAGTCCAACGAAAA--ACAACGGTATCCGATAAATCGCCGGGATAAAATAACACAAAATTAATAT--TGTTCAGTGGCTGCAGGAAA--ACCAAAGTTAATACAACATTATAACATATTTA-TTG------------CCAACGCT-AAA------AGC-----GGTCTTTGTCCCCAAACGACTTTCCACAAGCACAAAGC---CGCC---GCCGTCGTCTCCGT---CGTCGAAA-TCGCCGCCGTGCAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-CGAAAAG---CCAATTAGCTC-----------TTTGGC----------CATTT---G--AATGCCG--T----------------TTSizeHit CountTotal NormTotal
No Reads
droAna3
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCGTCGCCG-CACCGCCGCC-------------GCCGCACAAACAATAATAATGA---AAAGCGCCAGACAAAAAC-C-AAAAG---CTAATTGGCCGC-AA----------------------------------ACCGCTA--AGTGATTAATTAATTCCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCACCGTCACCG-CACCGCCGCC-------------GCCGCACAAACAATAATAATGA---AAAGCGCCAGACAAAAA--CTAAAAG---CTAATTGGCCGC-AA----------------------------------ACCGCTA--A----------------GTSizeHit CountTotal NormTotal
No Reads
dp5
CGCTTTTC------------CG-----GAA-------------------------------ATCGTTGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------GC---CGCC------G------ACGTCGTCGTCGTAGTTGT-GTCTACAAAAACAATAATAATAA---AAAGCGCTAGACAAAAGTGCTACTAG---GTAATTGGCTGT-AATTAT---TT----TTGCCGACAGATTTT---TTTTTTGT----G----------------GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................TAATAATAA---AAAGCGCTAGACAAAAG.........................................................................................2611.0010000000010
droVir3
A----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTAACGGT-AACGGGTTT-GCTGCGCG--CTG----TCGTAGA---------------CAAAGCTTGCGCC------G------TTGTCGCCGCCGTAGCTTTTTGCTACACAAACAATAATAATAAAAAAAAGCGCTAGACAAAATA-ATAATAGTTGCTAATTGGCTGC-CATTGTCAGTGTAGC----------TACTG---GTGCTCTGTC--C----------------GTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................CGCG--CTG----TCGTAGA---------------CAAAG.............................................................................................................................................................................1913.003120000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TCCTAACGGT-AACGGGTT...........................................................................................................................................................................................................................1813.003000000030000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CCTAACGGT-AACGGGTTT-GCTG.....................................................................................................................................................................................................................2212.002000000000000000000000001000000010000000000000000000000000000000
........................................................................................................................................................................ACGGT-AACGGGTTT-GCTG.....................................................................................................................................................................................................................1811.001000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................GCGCG--CTG----TCGTAGA---------------CAAAGCTTG.........................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GTAGA---------------CAAAGCTTGCGCC------G------........................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................GCGCG--CTG----TCGTAGA---------------CAAAG.............................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................T-AACGGGTTT-GCTGCGCG--CTG----........................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TT-GCTGCGCG--CTG----TCGTA...................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TCCTAACGGT-AACGGGTTT-G........................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................GTCAGTGTAGC----------TACTG---GTGCTCTGT......................2511.001010000000000000000000000000000000000000000000000000000000000000
A----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCCTAACGGT-AACGGGTTT-GCTG.....................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
A----------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTAACGGT-AACGGGTTT-GCAGCGCG--TCG----TTTAAGC---------------CAAAGCTTGCGTC------G------CCGTTGCCGCCGTAGCTTTCTGCTACACAAACAATAATAATAAAAAAAAGCGCTAGACGAAATA-ATAATAGTTAATAATTGGCTGC-CATTGTTGCTTCAGC----------T----------ACTGTTA---------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................CCGTTGCCGCCGTAGCTTTCTGCTAC..............................................................................................................................2611.001000010
.................................................................................................................................................................TTTTCTAACGGT-AACGGG.............................................................................................................................................................................................................................1811.001000100
...................................................................................................................................................................TTCTAACGGT-AACGGGTTT-GCAGCG...................................................................................................................................................................................................................2511.001100000
.......................................................................................................................................................................AACGGT-AACGGGTTT-GCAGCGCG--...............................................................................................................................................................................................................2311.001000010
droGri2
G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTC------T------CCGTCGCCGCCGTAGCTGTCTGCTACACAAACAATAATAATAAAAAAAAGCGCTAGACGAAATA-ATAATACTTGTTAACTGACTC------AC---TGCAGC---T--ACTGCAATTGTTATTTATGTTAGCA----------------GTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:47 PM