ID:

dsi_20288

 Coordinate:

2r:5587522-5587655 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.4 -20.4 -20.2

Flybase annnotation

exon [2r_5586262_5587521_-]; CDS [2r_5586262_5587521_-]; CDS [2r_5587656_5587706_-]; exon [2r_5587656_5587841_-]; intron [2r_5587522_5587655_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTCTGGCTTAGAGTACGGGTTGCATAGATACGATGACCTGCCGCTGGAGGTGAGCATATAATGTGAACGGACCGCTGCGGTCCCGTGACCAATCCATCATTTCGAGCGTATCTATATCTGCATATCCATATACCTGTTAGGGCAGTCAGCTGATTTTGTTTTTTTTTTTTGTTCCACCCCCAGATTGTTTTGAAGATTTTCAGCTATCTGGGCTACTCGGACCTACAAGCGGC
**************************************************..(((((........(((((((..((((((.((..((((........))))...)).)).........((((.....((......)).....)))).))))....)))))))........))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 M025
embryo
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
........................ATAGATACGATGACCTGCC............................................................................................................................................................................................... 19 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0
...........................................................................CTGCGGTCCCGTGACCAATCC.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................GTGACCAATCCGTAATTTCGA................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....TGGCTTAGAGTACGGGTTGCA................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTATCTGGGCTACTCGGACCTACAAGC... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...................GTTGCATAGATACGATGACC................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................TGGGCTACTCGGACCTACAAGCGGC 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................GTTGCATAGATACGATGACCTG................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................GGGTTGCATAGATACGATGAC.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........TAGAGTACGGGTTGCATAG.............................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GCTGATCTCGTTTTTTTTTTTCGTT............................................................ 25 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
................................GATGACTTGCGGCTGGGGGTG..................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................CCGCAGATTGTTTTGAA....................................... 17 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0
......GCTTTGATTACGGGTTGC.................................................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..........AGAGTACGGGTTGTA................................................................................................................................................................................................................. 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0
............................................................................TGCGGTCCCGTCACC............................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................AGGGCAGTGAGATGATTTA............................................................................ 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CGATTTGGCCTACTCGGAC........... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACAGACCGAATCTCATGCCCAACGTATCTATGCTACTGGACGGCGACCTCCACTCGTATATTACACTTGCCTGGCGACGCCAGGGCACTGGTTAGGTAGTAAAGCTCGCATAGATATAGACGTATAGGTATATGGACAATCCCGTCAGTCGACTAAAACAAAAAAAAAAAACAAGGTGGGGGTCTAACAAAACTTCTAAAAGTCGATAGACCCGATGAGCCTGGATGTTCGCCG
**************************************************..(((((........(((((((..((((((.((..((((........))))...)).)).........((((.....((......)).....)))).))))....)))))))........))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
...................................................................................................................................................GTCGGCTAAAACAAAAAA..................................................................... 18 1 1 3.00 3 3 0 0 0 0 0 0 0 0
....................................................................................GCACTGGTTAGGTAGTAA.................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................................CCACGGCACTGGTTAG........................................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................TCGGCTAAAACAAAAAAAAAA................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................CGGTCGGCTAAAACAAAAAA..................................................................... 20 2 3 0.67 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................CGGTCGGCTAAAACAAAAAAA.................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................GGTCGGCTAAAACAAAAAAAA................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GGTCGGCTAAAACAAAAAAA.................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................CGGCTAAAACAAAAAAAA................................................................... 18 1 12 0.25 3 3 0 0 0 0 0 0 0 0
................................................................................................................................................................AAAAAAAAATTTAAGGTGGGGGT................................................... 23 3 6 0.17 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................GGTCGGCTAAAACAAAAAA..................................................................... 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAAAAAAAAAAACAAGGTTGTAGT................................................... 24 3 6 0.17 1 0 0 0 0 1 0 0 0 0
................................................................................CAGGGCACTGGTTTAATAGT...................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0
......................CGTATCTGTGCTGCTGGAA................................................................................................................................................................................................. 19 3 7 0.14 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................AAAACTCGATAGGCCCG.................... 17 2 7 0.14 1 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................AGGTGGGGGTCTTAC.............................................. 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................AAAAAAACGAGGTGCGGGTTT................................................. 21 3 13 0.08 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................AAGTCGGTAGACCCG.................... 15 1 15 0.07 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................AAAAAAAAAAAAAAGGTTGAGGTC.................................................. 24 3 18 0.06 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................AACGAGGTGCGGGTCTA................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................ACAAAAAAAAAAAACAA............................................................ 17 0 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 05:46 PM