ID:

dsi_20268

 Coordinate:

3l:15726535-15726684 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.2 -22.9 -22.8 -22.7

Flybase annnotation

CDS [3l_15726163_15726534_+]; exon [3l_15726003_15726534_+]; intron [3l_15726535_15727336_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTCAAGTGCACCAGCAGGAATCGTAACCATGACCAAGACCATCAATCAGGTATCCATATTAAAGCTAAACCCACTCTTCGGGCGCTAGGCGATCGCAACTCGGGCGTATCACTTCGTCCAATCTGATCCCCAATCAAAACCCCCTCAATTCCTCGCTCGAATCGGATAGTAGTGGCCGCACACACTTTGGTTGTATACTTTTATTATGCTTTCATCTGTCTAACTCGCTGCCCGAAATTCCCTTATCCT
************************************************************************.......((..(((((....(((.....(((((((...............................................)))))))....)))..)))))..))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................GAATCGGATAGTAGTGGCCG....................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................ATGCTTTCATCTGTCTAACTCGCTGCC................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTCTAACTCGCTGCCCGAAATTCCC....... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TTTCATCTGTCTAACTCGCTGCCC................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................ATCGGATAGTAGTGGCCG....................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................AGCGATCGCAACTCGGGCGC.............................................................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCTGTCTAACTCGCTGCC................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................CACTCTTCGGGCGCTAGGCGATC........................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................CGATTCCGTTAGTAGTGG.......................................................................... 18 3 20 0.10 2 0 0 0 0 0 1 0 0 1
..............................................................................................................................................................CGATTCCGTTAGTAGTGGC......................................................................... 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................TTCCTCGCTGGATTCGGAGAGTA.............................................................................. 23 3 14 0.07 1 0 0 0 0 0 1 0 0 0
..................................................................CTAACCCACTCTTCGGG....................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0
..................................................................................GCCCTAAGCGATCGCA........................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
................................................................................GTGCTCTAAGCGATCGCA........................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
................AGGAATCTTGACCATCACC....................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

AGAGTTCACGTGGTCGTCCTTAGCATTGGTACTGGTTCTGGTAGTTAGTCCATAGGTATAATTTCGATTTGGGTGAGAAGCCCGCGATCCGCTAGCGTTGAGCCCGCATAGTGAAGCAGGTTAGACTAGGGGTTAGTTTTGGGGGAGTTAAGGAGCGAGCTTAGCCTATCATCACCGGCGTGTGTGAAACCAACATATGAAAATAATACGAAAGTAGACAGATTGAGCGACGGGCTTTAAGGGAATAGGA
***********************************************************************.......((..(((((....(((.....(((((((...............................................)))))))....)))..)))))..))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
.............................................................................................................AGTGACGCACGTTAGAGTAGG........................................................................................................................ 21 3 2 2.00 4 4 0 0 0
....................................................................TTGGGTGAGAAGCCCACCATA................................................................................................................................................................. 21 3 1 1.00 1 0 1 0 0
......................................................................................................................GGTAAGCCTAGGGGCTAGTTTT.............................................................................................................. 22 3 1 1.00 1 1 0 0 0
.......ACGTAGTCGTGCTTAGCAGT............................................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0
..........................................................................................................................................TTGGGGGGGGTAAGGAGAGA............................................................................................ 20 3 7 0.14 1 0 0 1 0
.................................................................................................................AAGCAGGTGAGACTA.......................................................................................................................... 15 1 8 0.13 1 0 0 0 1
.................................................................................................................AAGCAGGTGAGACCAGG........................................................................................................................ 17 2 14 0.07 1 1 0 0 0
..................................................................................................................................................GTTAAGGATCGAGCGAAGC..................................................................................... 19 3 20 0.05 1 0 0 1 0
...........................................................TGTTTCGATTTGGGTAAGA............................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0

Generated: 04/23/2015 at 07:18 PM