ID:dsi_20265 |
Coordinate:3r:4367034-4367326 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3r_4366858_4367033_-]; CDS [3r_4366858_4367033_-]; CDS [3r_4367327_4367400_-]; exon [3r_4367327_4367400_-]; intron [3r_4367034_4367326_-]
No Repeatable elements found
| ##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCTGCACTGTCTTATGGCCTGCAGTTGCTCAACTTTTCGGCCATATTTAGGTAATTCAATGTTTTAATTAGCATGTCTCGAAAACCTGTCGTGTGATTAAATCGAATTCGTCATACGGTGAGAACTGCAAGCCACCCGGACTTGCCTGACTGGTTTGATAGACACTATTATCATGCCGGGTTCTCGGACACGTTTGTTTGATTGCCTTATCAGTTGGTAAATTGTGGATTGCTTCTGATTAATGGTAGTTACAGGGAATGTAGTCCAGTTAGCTAGAAGATTATTACCAATGATTATGTCTGGATTGTACAATCATATTTCAAAAGAATTCTTCCACTGCCAGATTTGCTGCCATCAAAAATGTGCCCAAGAAAGACATTGCCGCCCTGCGGT **************************************************(((((..(((.(((((.(((((................(((((((((.((......)).))))))))).((((((.(((((((....)).)))))....(((((.((((((......)))))).)))))))))))((((((((((.((((((((((..(((((..(((((........))))).)))))....)))))))).)).)))))).)))).))))).))))).))))))))...(((.((((..((.......))..))))..))).....................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M025 embryo |
M024 male body |
SRR553485 Chicharo_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR902009 testis |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ......................AGTTGCTCAACTTTTCGGCC............................................................................................................................................................................................................................................................................................................................................................... | 20 | 0 | 1 | 3.00 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .......................GTTGCTCAACTTTTCGGCC............................................................................................................................................................................................................................................................................................................................................................... | 19 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................ATTAAGTCGAATTCGTGAT....................................................................................................................................................................................................................................................................................... | 19 | 2 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........CTTATGGCCTGCAGTTGCTCAACT....................................................................................................................................................................................................................................................................................................................................................................... | 24 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................................................................................................TTCAAAAGAATTCTCCCACTGCCAGATT............................................... | 28 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................................................CAGATTTGCTGCCATCAAAA................................. | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................................................................TTTGCTGCCATCAAAAATGTGCCCAAGA..................... | 28 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................................................................................................................TATTCCACTGCCAGGTTTGCGGC......................................... | 23 | 3 | 2 | 1.00 | 2 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
| .................................................................................................................................................................................................................................................................ATGTAGCTCAGTTGGCTAG..................................................................................................................... | 19 | 3 | 20 | 0.10 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................TATCAGTTGGTAGAT........................................................................................................................................................................... | 15 | 1 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................................................................................................................................................................................CAATCATTATGGCTGGA......................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................GTTGGTAGAGTGTGGACTG.................................................................................................................................................................. | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...................................................................................................................................................................................................................................ATTGCGTCTGATTACTAG.................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
|
AGACGTGACAGAATACCGGACGTCAACGAGTTGAAAAGCCGGTATAAATCCATTAAGTTACAAAATTAATCGTACAGAGCTTTTGGACAGCACACTAATTTAGCTTAAGCAGTATGCCACTCTTGACGTTCGGTGGGCCTGAACGGACTGACCAAACTATCTGTGATAATAGTACGGCCCAAGAGCCTGTGCAAACAAACTAACGGAATAGTCAACCATTTAACACCTAACGAAGACTAATTACCATCAATGTCCCTTACATCAGGTCAATCGATCTTCTAATAATGGTTACTAATACAGACCTAACATGTTAGTATAAAGTTTTCTTAAGAAGGTGACGGTCTAAACGACGGTAGTTTTTACACGGGTTCTTTCTGTAACGGCGGGACGCCA
**************************************************(((((..(((.(((((.(((((................(((((((((.((......)).))))))))).((((((.(((((((....)).)))))....(((((.((((((......)))))).)))))))))))((((((((((.((((((((((..(((((..(((((........))))).)))))....)))))))).)).)))))).)))).))))).))))).))))))))...(((.((((..((.......))..))))..))).....................************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
GSM343915 embryo |
SRR618934 dsim w501 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................GCCTCTCTTGACGTTC...................................................................................................................................................................................................................................................................... | 16 | 1 | 1 | 3.00 | 3 | 3 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................CTGTCCAAACTACCAGTGATAAT............................................................................................................................................................................................................................... | 23 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................ATGGATCTTCTAATAACGGTG....................................................................................................... | 21 | 3 | 2 | 1.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................................................................................................................GTTTTCTTAAGTAGGTGACAGTAT................................................. | 24 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................................TCTTAAGATGGTGAC...................................................... | 15 | 1 | 20 | 0.35 | 7 | 2 | 0 | 0 | 2 | 3 | 0 |
| .........................................................................................................................................................................................................................................................................................................................................AGAATGTGACGGTCTAA............................................... | 17 | 1 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................AGAGCGGGTATAAATC....................................................................................................................................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.15 | 3 | 0 | 0 | 0 | 3 | 0 | 0 |
| ...........................................................................AGAGCTTTCGAGCAGCACA........................................................................................................................................................................................................................................................................................................... | 19 | 3 | 8 | 0.13 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................................................................................................................AGAATGTGACGGTCTA................................................ | 16 | 1 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ........................................................................................................................................................................................................TAACGGAATAGTCCA.................................................................................................................................................................................. | 15 | 1 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................................................................................................ACGGACAGACCAAACGAT......................................................................................................................................................................................................................................... | 18 | 2 | 14 | 0.07 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................................................................................................................................................................................................................................TTACTTAAGAAGGTCACG..................................................... | 18 | 2 | 16 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ................................................................................................................................................................................................AAAAAAACTAACGGAA......................................................................................................................................................................................... | 16 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................CCTCTCTTGACGTTCGT.................................................................................................................................................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................GTGGGCCTAAACGGATTC................................................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .................................................................TTAATCGTACAGATATTT...................................................................................................................................................................................................................................................................................................................... | 18 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..................................................................................................................AGCCTCTCTTGACGTTC...................................................................................................................................................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................AGCCTCTCTTGACGTT....................................................................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................................................................................................................................................AGAAGGTCACGGTCT................................................. | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................AACTACCATCGATGTC........................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................................................................................................................................................AAGAAGGTGAAGGTC.................................................. | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ......................................................................................................................................................................TAATAGTAGGGCCCAT................................................................................................................................................................................................................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
Generated: 04/24/2015 at 04:01 AM