ID:

dsi_2025

 Coordinate:

3r:1081356-1081481 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.7 -26.1 -26.1

Flybase annnotation

exon [3r_1081482_1081668_-]; CDS [3r_1081482_1081542_-]; CDS [3r_1080766_1081355_-]; exon [3r_1080641_1081355_-]; intron [3r_1081356_1081481_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------##################################################
ACTACTTCTTACAGGACTGGCGCTGGTGGGCAGCATTTCCAGGGGAGCCGGTAAGTTGCGACCTGAAGCAAGTCGCGTCTATGTGGTCTTCTGTGATTGGCCGCCCCGCTTCTTGAACCTTTCGTGGCCATCGTTAATGCTTATCTTGTATTCCATCTTGACCCTGCTGGAAACAGCCACAGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTCAAC
**************************************************((((((.(((((((((((((((..(((.....((((((..........))))))..)))..))))....))))).))...))))....)))))).((((.(((((............)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 M025
embryo
 M024
male body		 M023
head
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................................................................ATATTGACCCAGCTGGAA...................................................... 18 2 8 7.88 63 0 63 0 0 0 0 0 0 0 0 0 0
..TACTTCTTACAGGACTGGCGTT.......................................................................................................................................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
...ACTTCTTACAGGACTGGCGTTT......................................................................................................................................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
.........TACAGGACTGGCGCTGGTGG..................................................................................................................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
.CTACTTCTTACAGGACTGGCGT........................................................................................................................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...ACTTCTTACAGGACTGGCGTT.......................................................................................................................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTGACCCAGCTGGAA...................................................... 15 1 20 2.70 54 0 54 0 0 0 0 0 0 0 0 0 0
.................................CAATTCCAGTGGAGCCGGGAAG........................................................................................................................................................................... 22 3 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..TACTTCTTACAGGACTGGCGT........................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........TACAGGACTGGCGCTGGTG...................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........ACAGGACTGGCGCTGGTGGG.................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........CAGGACTGGCGCTGGTGGG.................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........TACAGGACTGGCGCTGGTGGG.................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAACGTGGTCACCTGCGGCTTT.................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...ACTTCTTACAGGACTGGCGT........................................................................................................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
ACTACTTCTTACAGGACT................................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0
...........CAGGACTGGCGCTGGTGGGCA.................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....TTCTTACAGGACTGGCGCT.......................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....TTCTTACAGGACTGGCGCTG......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...ACTTCTTACAGGACTGGCTT........................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........CAGGACTGGCGCTGGTGGGTTT................................................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CAACGTGGTCACCTGCGGCT.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........ACAGGACTGGCGCTGGTGTT.................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....CTTCTTACAGGACTGGCGT........................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............AGGACTGGCGCTGGTGGGCAG................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTCCATCCTGAAGCTGCTTAA. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CTACTTCTTACAGGACTGGCGTTT......................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........TACAGGACTGGCGCTGGTGGGTTT................................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CACCTGCGGCTCCATCCTGA........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CTACTTCTTACAGGACTGT.............................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGGCTCCATCCTGAAGCT....... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..TACTTCTTACAGGACTGGCGCTGGT....................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.CTACTTCTTACAGGACTGGCGCTG......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................TGCTTATCTTGTATTCCA....................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...ACTTCTTACAGGACTGGCGTTTTT....................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....TTCTTACAGGACTGGCGCTAT........................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGCCGCGACCTGAAGCAACTC........................................................................................................................................................ 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....TTCTTACAGGACTGGCGC........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................TGGGCAGCATTTCCAGGGGAGCTT................................................................................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............AGGACTGGCGCTGGTGGGTAT................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..TACTTCTTACAGGACTGGCG............................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......CTTACAGGACTGGCGCTGGTGT..................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....TTCTTACAGGACTGGCGCTGGTGGGC................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......TCTTACAGGACTGGCGCTGGTGGGC................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........TTACAGGACTGGCGCTGGTGG..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....TTCTTACAGGACTGGCGCTT......................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CTACTTCTAACAGGACTGG.............................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........CAGGACTGGCGCTGGTGGGTT.................................................................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........ACAGGACTGGCGCTGGTGGT.................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...ACTTCTTACAGGACTGGCGTTA......................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....TTCTTACAGGACTGGCGCTGGTGGGCAGCA............................................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.CTACTTCTTACAGGACTGGCGTA.......................................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...ACTTCTTACAGGACTGGCGCT.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AACGTGGTCACCTGCGGCTTT.................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..TACTTCTTACAGGACTGGCGTA.......................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CCAACGTGGTCACCTGCGGC..................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..TACTTCTTACAGGACTGGCGTTT......................................................................................................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......TCTTACAGGACTGGCGCTGTTT...................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CTACTTCTTACAGGACTGG.............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............AGGACTGGCGCTGGTGGGCA.................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.CTGCTTCTTACAGGACTGG.............................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........TACAGGACTGGCGCTGGTTA..................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCACCTGCGGCTCCATCCTTT........... 21 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........ACAGGACTGGCGCTGGTGG..................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........TTACAGGACTGGCGCTGGTTT..................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...ACTTCTTACAGGACTGGCGTA.......................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TGCGGTCTTTTGTGATT................................................................................................................................ 17 2 20 0.60 12 0 0 0 0 0 0 0 0 12 0 0 0
.............................................................................................................................................................................CGGTAACAGAATCCAACGTGG................................ 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
.........TACAGGACTGGCGCTGGTTTT.................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GTGGTCACCTGCGGCTCCAA................ 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............AGGACTGGCGCTGGTGGGTT.................................................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..........ACAGGACTGGCGCTGGTGTTT................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTCATGGTCATCGTTAATGC...................................................................................... 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGGTCACCTGCGGCTCCACTTT............. 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
............AGGACTGGCGCTGGTGGTA................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CACTGAATCCAACTTGGT............................... 18 2 7 0.29 2 0 0 0 0 0 0 1 0 0 1 0 0
............................................................................................................................................................................AGAGCCACTGAATCCAACTTG................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0
............AGGACTGGCGCTTATGGG.................................................................................................................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................AAGAGCCACTGAATCCAAC.................................... 19 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
............AGGACTGGCGCTGGTGGTAT.................................................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATATTGACCCGGCTGGAA...................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
........TAACAGGACTGGCGCTGGAC...................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATTTTGACCCAGCTGGAA...................................................... 18 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................AGTCGTGTCTAAGTGG............................................................................................................................................ 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0
.....................................................................AAGTCACGTCTAAGTGG............................................................................................................................................ 17 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................TGGTCATCGTTAATG....................................................................................... 15 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGATGAAGAATGTCCTGACCGCGACCACCCGTCGTAAAGGTCCCCTCGGCCATTCAACGCTGGACTTCGTTCAGCGCAGATACACCAGAAGACACTAACCGGCGGGGCGAAGAACTTGGAAAGCACCGGTAGCAATTACGAATAGAACATAAGGTAGAACTGGGACGACCTTTGTCGGTGTCTTAGGTTGCACCAGTGGACGCCGAGGTAGGACTTCGACGAGTTG
**************************************************((((((.(((((((((((((((..(((.....((((((..........))))))..)))..))))....))))).))...))))....)))))).((((.(((((............)))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................TTTAGGTTGCACCAGTGGACG........................ 21 1 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................................................................................................................TGGACGCCGAGGTAGGACTTC......... 21 0 1 3.00 3 3 0 0 0 0 0 0
................................................................................................................................................................................................CCAGTGGACGCCGAGGTAGGAC............ 22 0 1 2.00 2 0 2 0 0 0 0 0
..............................................................................................................................................................................................CACCAGTGGACGCCGAGGTAG............... 21 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................GTGGACGCCGAGGTAGGACTT.......... 21 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................GTGGACGCCGAGGTAGGACT........... 20 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................TATAGGTTGCACCAGTGGACGC....................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................GGACGCCGAGGTAGGACTT.......... 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................CCAGTGGACGCCGAGGTA................ 18 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................................TGACGCCGAGGTAGGACTT.......... 19 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................TAGTGGACGCCGAGGTAGGACT........... 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................GACGCCGAGGTAGGACTT.......... 18 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................TGGACGCCGAGGTAGGACTT.......... 20 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................................................................TTAGGTTGCACCAGTGGACG........................ 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................GTGGACGCCGAGGTAGGAC............ 19 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................TCTTAGGTTGCACCAGTGGAC......................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................TGGACGCCGAGGTAGGACT........... 19 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................TTGACGCCGAGGTAGGACTT.......... 20 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................AGGACGCCGAGGTAGGACTT.......... 20 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................CTTTGTCGGTGTCTTAGGTTGCACC................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
AGATGACGAATGTCCTGA................................................................................................................................................................................................................ 18 2 4 0.50 2 0 0 2 0 0 0 0
........................................................................................................GGGAAAAGAACTTAGAAAGCA..................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................CTAAGGTTGCACCAGGG............................ 17 2 4 0.25 1 0 0 0 0 1 0 0
...............................................................................................................................................TGATCAGAAGGTAGAACTGG............................................................... 20 3 5 0.20 1 0 0 0 0 0 1 0
...TGACGAATGTCCTGA................................................................................................................................................................................................................ 15 1 9 0.11 1 0 0 1 0 0 0 0
AGATGACGAATGTCCT.................................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 0 2 0 0 0
..........................................................................................................................................................................TTTGTCGGCGTCTGAGGTTGA................................... 21 3 10 0.10 1 1 0 0 0 0 0 0
AGATGACGAATGTCCTGGC............................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 1 0 0 0
........................................................................................................GGGAAAAGAACTTAGAAAGC...................................................................................................... 20 3 13 0.08 1 0 0 0 1 0 0 0
........................................................................................................................AAGGACCGGTAGCAA........................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1
.......GAATGTACTGACCGAG........................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0
.......................................................................................................................................................ATGTAGATCTTGGACGACC........................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0
...................................AAAGGTTCAGTCGGCCATT............................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................ACCGCCGGGGCGAAAAA................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:1081306-1081531 - dsi_2025 ACTACTTCTT--ACAGGACTGGCGCTGGTGGGCAGCATTTCCAGGGGAGCCGGTAAGTTGCGACCTGAAG-----CAAGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CGCCCCGCT-----TC-TTGAA----CCTTTCGTGGC-------------------CATCGTT-----------------AAT-GCTTATCTT-GTATTCCATCTTGACCCT----GCTGGAAACAGCCACAGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTCAAC
droSec2 scaffold_6:1299173-1299398 - ACTACTTCTT--ACAGGACTGGCGCTGATGGGCAGCATTTCCAGGGGAGCCGGTAAGTTGCGACCTGAAG-----CAAGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CGCCCCGCT-----TC-TTGAA----CCTTTCGTGGC-------------------CATCGTT-----------------AAT-GCTTATCTT-GTATTCCATCTTGACCCT----GCTGGAAACAGCCACAGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTTAAC
dm3 chr3R:1180106-1180332 - ACTACTTCTT--ACAGGACTGGCGCTGGTAGGCAGCATTTCCAGGGGAGCCGGTAAGTGGCGACCTGAAA---C-AAAGT-----CGCGTCTATGTGGTCTTCTCTGATTGGC-CGCCCCT--CT---TT-CTGAA----CCTTCCGTGGC-------------------CATAGTT-----------------AAT-GCTTATCTT-ATATTCTATCTTGACCCT----GCTGAACACAGCCACCGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTCAAC
droEre2 scaffold_4770:1449243-1449470 - AATACTTCTC--ACTGGACTTTTGCTGGTGGTCAGCATTCGCAGGGGTGCCGGTAAGTTTCGACCTCGAA---G-AAAGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CGC--CACTCT---TT-CGGAG----CCTTTTGTGGC-------------------TATCATT-----------------AAT-GTTTATCTTTGTATTACATCTTTTCCCT----GCTAAATACAGCCACGGAATCCAACGTGGTCACCTGTGGCTCCATCCTGAAGCTCCTCAAC
droYak3 3R:1568630-1568857 - AATACTTCTC--GCAGGACTTTTGTTGGTGGTCAGAATTCCCAGCGGTGCCGGTAAGTTTCGACTTCAAG---A-AAGGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CGCCCCT--CT---TT-CTGAG----CCTTTCGTGGC-------------------TATCAGT-----------------AAT-GTTTATCTTCGTACTCCATCTTGTCCCT----GCTGAAAACAGCCACGGAATCCAACGTGGTCACCTGTGGCTCCATCCTGAAGCTACTTAAC
droEug1 scf7180000409766:97985-98221 - ACTACTCCTA--GCGGGATTGGCGCTAGTCATCAGCCTTCTCAACGGTGCCGGTAAGTTTCGACCCCTAG---G-AAAGT-----TGCGTCTATGTGGTCTTCTGTGATTGGC-CACGCCGTTCT---TT-TCGAC----CCTTTGGTG--CTGATTA----TC---GCAGAGAATT-----------------AAT-GTTTATCTCGGTGC-ACATCTTTTCACT-----CT-GAAACAGCAACGGAATCTAACGTGGTCACCTGCGGCTCCATCCTGAAGCTCCTTAAC
droBia1 scf7180000302411:932158-932395 - ACTACTTCTT--GTGGGACTGGCGCTGGTCAGCAGCCTCTCCAGCGGTGCCGGTAAGTTTCGACCCCGGT---T-AAACT-----CGCGTCTATGTGGGCTTCTGTGATTGGC-CACGCCACTCT---TT-TCGAC----CCCGGACAC--TCCACAA----TC---G-GCAGTATT-----------------AAT-GTTTATCTCTTT-CCATATCTTCCCTAC----TCCGGAAAAAGCCACGGACTCGAACGTGGTCACCTGCGGCTCCATCCTGAAGCTCCTCAAC
droTak1 scf7180000415789:197754-197991 + ACTACTCCTC--GCGGGACTGGCGCTGGTCAGCAGCCTCTCCAGCGGTGCCGGTAAGTTTCGAGCCCCCG---G-AAAGT-----AGCGTCTATGTGGTCTTCTGTGATTGGC-CACGCCACTCT---TT-TCGAC----CCTTTGCTG--TCCATAA----TC---G-CCAGCAAT-----------------AAT-CTTTATCCG-CTAACGTATCTCCCTACC----TTCGGAAACAGCCACGGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTACTCAAC
droEle1 scf7180000491021:297206-297445 + ACTATTCCTC--GCGGGACTGGCTCTGGTCAGCAGCCTATCCAGCGGTGCCGGTAAGTCTTGACCCCGCG---G-AAAGT-----TGCGTCTATGTGGTCTTCTGTGATTGGC-CACGCCGCTCT---TT-TCGAA----CCTTTGGTG--CTCATGG----TC---GCCCAGCATT-----------------AAT-GTTTATCTTGGTACACCATCTTCTCCAC----TCCGGAAACAGCCACGGATTCCAATGTGGTCACCTGCGGCTCCATACTGAAGCTGCTGAAC
droRho1 scf7180000779349:31618-31861 + ACTACTGCTC--GCCGGATTGGCTCTGGTCAGCAGCCTTTCCAGTGGTGCCGGTAAGTTTCGACCCCGAG---G-AAAGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CACGCCGCGCT---TT-TCGAA----CCTTTCGTG--CTAATACTGAGTC---GCCCAGCTTT-----------------AAT-GTTTATCTTTGTACACCATCCTCTCTCC----TCCGAAAACAGCCACGGAATCCAACGTGGTTACCTGCGGCTCCATCCTGAAGCTCCTGAAC
droFic1 scf7180000453850:561953-562190 - ACTACTCCTT--GCGGGCCTGGCCCTGGTCAGCAGCCTCTCAAGCGGTGCCGGTAAGTTGTGACCCCAAG---G-GAAGT-----TGCGTCTATGTGGTGTTCTGTGATTGGC-CACGCCGCA-----TG-TTGGC----CCTTGGATG--CCTAAGT----CT---GCCCATCATT-----------------AAT-ATTTTTCTCGGAACACTATCTCCCTAAC----TACGAAAACAGCAACGGAATCCAATGTGGTCACCTGCGGCTCTATTCTGAAGCTCCTGAAC
droKik1 scf7180000302461:602209-602433 - GCTACTCCTG--GCCGGGCTTGCACTTGTCAGCAGCATATTCAGCGGAGCCGGTAAGTTGAAACCCAGC----C-AGGGA-----CGCGGCTATGTGGTCTTCTGTGATTGGC-CACGCCGCTGT---TC-CCGCC------TCCCCT---------------------CCGGACTT-----------------CAT-GTTAATCTCGATTTACCATCTTCCAAAC----CCCGGCGTCAGCTACGCAAACCAACGTGGTGACCTGCGGCTCCATACTGAAGCTTCTGAAC
droAna3 scaffold_13340:23355721-23355976 - TCTACTGTTC--GTTGCGCTAGCGCTTGTCAGCTGTCTTTACAGCGGAGCCGGTAAGTTGCGGCATAACGCGATAGACGCCGCGGCGGGATTATGTGGTCTTCTGTGATTGGC-CACGCCGCTCCGGTTGTCCGCC----CCCTTGGGG--CCACTAA----TTGTAATCTGGCTTT-----------------AAC-GTTCCACTCTGTTTCTTATCTTCCAATC----TCGGCCTGTAGCCACCCAGACGAACGTGGTTACCTGCGGTTCCATTTTGAAGCTCCTTAAC
droBip1 scf7180000396395:358816-359071 - ACTACTGCTC--GTCGCTTTTGCGCTTGTCAGCTGTCTCTCCAGCGGAGCCGGTAAGTTTCGGCACAACGCGATAGACGCCGCGGCGGGATTATGTGGCCTTCTGTGATTGGC-GACGCCGCTCCGGTTGTCCGCC----CC-CTTGAGG-CCACAAA----TTGTAATCTGGCTTT-----------------AAC-GTTCCACTCTGTTTCTTATCTTCCAATC----TCGTCCTGCAGCCAACCAGGCAAACGTGGTAACCTGTGGTTCCATTTTGAAGCTCCTTAAC
dp5 2:21600538-21600759 + ACTATTGCTA--CCCGTACTGGCCCTGATTAGCTGCCTGAGCATCGTCTCCGGTAAGTGCCAGCGAGAAGCCGCAGAGGC-----GGCGTTTATGTGGTCTTCTGTGATTGGC-CACGCCGCCCC---TT-TACAA-------------T-------------------GCAGAAGT-----------------ATT-ATTGATCTA------TTATCTTTTAATC-ATCTGCGAGTGTAGCCACCCAAACCAATGTGGTGACGTGTGGCTCCATACTAAAGCTCCTCAAC
droPer2 scaffold_3:4385566-4385787 + ACTATTGCTA--CCCGTACTGGCCCTGATTAGCTGCCTGAGCATCGTCTCCGGTAAGTGCCAGCGAGAAGCCGCAGAGGC-----GGCGTTTATGTGGTCTTCTGTGATTGGC-CACGCCGCCCC---TT-TACAA-------------T-------------------GCAGAAGT-----------------ATT-ATTGATCTA------TTATCTTTTAATC-ATCTGCGAGTGTAGCCACCCAAACCAATGTGGTGACGTGTGGCTCCATACTAAAGCTCCTCAAC
droWil2 scf2_1100000004943:12740574-12740766 + GGTGAGCTGAGAGC-TGAGTCTCATTGCTTAGCGGCTT-------------------------------------------------TTTTTATGTGGTCTTCTGTGATTGGC-CACGCCGCTCA---CA-ACGCCCCCCCG---CTTGCC-------------------CACCGCT-----------------AATCGCTAAAATC-GAATTTCTTTCTGCTTTTG---TTGTTATCCAGCCACCCAGACAAATGTTGTGACGTGTGGTTCCATACTAAAGCTGCTCAAT
droVir3 scaffold_12855:7735712-7735934 + dvi_4380 ACTGATGTTC--GTTGTTTTAGCGCTAATCAGCTGTCTGCCTAATAACAATGGTGCGTATTTTGCAGCAG---CGGCGTC-----GCTGTTTATGTGGTGTGCTGTGATTGGC-CACTCAGCTCT---TG-CCGCC----CTATAAATA--TCAATTATACGAT---TCCTATCAAT-----------------AAT-AA-------------------T---AAA----TACTCTCACAGCTGTTCAGAATAACTATGTGACATGTGGCTCCATATTGAAATTGCTCAAC
droMoj3 scaffold_6540:22950466-22950703 + dmo_2031 ACTACTCTTC--GTTGCTCTAGCGCTGATCAGCAGCATACCCTATAACAATGGTACGTATATT-------------TTGT-----GGCGTTTATGTGGGCCGCTGTGATTGGC-CACGAAGCCTT---TT-CCGCC----CC--ACAAAGCGCAATTTTCTGAT---TCCTATCAATACAATAACAGCAACAACAACAACAAAAAAC-G--------------ACT----ACTTCTTTCAGCTGCCCAGACCAACTATGTGACATGTGGTTCCATACTGAAATTGCTCAAC
droGri2 scaffold_15074:4275405-4275547 + ----------------------------------------------------------------------------------------GTTTATGTGGTTGGCTGTGATTGGCCCACGCCGCATT---TT-CCGCC----CCCCTCAAA---------------------AAAAAAA-----------------GAA-ACTTAAATT-GAAA-CGATTTCC-----------CAAGTTTAGCTGCCAAGACGAACTACGTTACATGTGGCTCCATACTGAAATTGCTCAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACTACTTCTT--ACAGGACTGGCGCTGGTGGGCAGCATTTCCAGGGGAGCCGGTAAGTTGCGACCTGAAG-----CAAGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CGCCCCGCT-----TC-TTGAA----CCTTTCGTGGC-------------------CATCGTT-----------------AAT-GCTTATCTT-GTATTCCATCTTGACCCT----GCTGGAAACAGCCACAGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTCAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........T--ACAGGACTGGCGCTGGTGG....................................................................................................................................................................................................................................................................2014.00400000000000004000
.CTACTTCTT--ACAGGACTGGCGT..........................................................................................................................................................................................................................................................................2213.00300000000000003000
..TACTTCTT--ACAGGACTGGCGT..........................................................................................................................................................................................................................................................................2112.00200000000000002000
.........T--ACAGGACTGGCGCTGGTG.....................................................................................................................................................................................................................................................................1912.00200000000000002000
............ACAGGACTGGCGCTGGTGGG...................................................................................................................................................................................................................................................................2012.00200000000000002000
.............CAGGACTGGCGCTGGTGGG...................................................................................................................................................................................................................................................................1912.00200000000000002000
.........T--ACAGGACTGGCGCTGGTGGG...................................................................................................................................................................................................................................................................2112.00200000000000002000
...........................................................................................................................................................................................................................................................CAACGTGGTCACCTGCGGCTTT..................2212.00200000000000002000
...ACTTCTT--ACAGGACTGGCGT..........................................................................................................................................................................................................................................................................2012.00200000000000002000
ACTACTTCTT--ACAGGACT...............................................................................................................................................................................................................................................................................1812.00201100000000000000
.............CAGGACTGGCGCTGGTGGGCA.................................................................................................................................................................................................................................................................2112.00200000000000002000
.....TTCTT--ACAGGACTGGCGCT.........................................................................................................................................................................................................................................................................1912.00200000000000002000
.....TTCTT--ACAGGACTGGCGCTG........................................................................................................................................................................................................................................................................2011.00100000000000001000
...ACTTCTT--ACAGGACTGGCTT..........................................................................................................................................................................................................................................................................2011.00100000000000001000
.............CAGGACTGGCGCTGGTGGGTTT................................................................................................................................................................................................................................................................2211.00100000000000001000
...........................................................................................................................................................................................................................................................CAACGTGGTCACCTGCGGCT....................2011.00100000000000001000
............ACAGGACTGGCGCTGGTGTT...................................................................................................................................................................................................................................................................2011.00100000000000001000
....CTTCTT--ACAGGACTGGCGT..........................................................................................................................................................................................................................................................................1911.00100000000000001000
..............AGGACTGGCGCTGGTGGGCAG................................................................................................................................................................................................................................................................2111.00100000000000001000
.........T--ACAGGACTGGCGCTGGTGGGTTT................................................................................................................................................................................................................................................................2411.00100000000000001000
....................................................................................................................................................................................................................................................................CACCTGCGGCTCCATCCTGA...........2011.00100000000000001000
.CTACTTCTT--ACAGGACTGT.............................................................................................................................................................................................................................................................................1911.00100000000000001000
..........................................................................................................................................................................................................................................................................CGGCTCCATCCTGAAGCT.......1811.00100001000000000000
..TACTTCTT--ACAGGACTGGCGCTGGT......................................................................................................................................................................................................................................................................2511.00100000001000000000
.CTACTTCTT--ACAGGACTGGCGCTG........................................................................................................................................................................................................................................................................2411.00100100000000000000
....................................................................................................................................................................................................T-GCTTATCTT-GTATTCCA...........................................................................1811.00100001000000000000
.....TTCTT--ACAGGACTGGCGCTAT.......................................................................................................................................................................................................................................................................2111.00100000000000001000
.....TTCTT--ACAGGACTGGCGC..........................................................................................................................................................................................................................................................................1811.00110000000000000000
............................TGGGCAGCATTTCCAGGGGAGCTT...............................................................................................................................................................................................................................................2411.00100000000000001000
..TACTTCTT--ACAGGACTGGCG...........................................................................................................................................................................................................................................................................2011.00100000000000001000
.......CTT--ACAGGACTGGCGCTGGTGT....................................................................................................................................................................................................................................................................2211.00100000000000001000
.....TTCTT--ACAGGACTGGCGCTGGTGGGC..................................................................................................................................................................................................................................................................2611.00100000000000010000
......TCTT--ACAGGACTGGCGCTGGTGGGC..................................................................................................................................................................................................................................................................2511.00100000000000001000
........TT--ACAGGACTGGCGCTGGTGG....................................................................................................................................................................................................................................................................2111.00100000000000001000
.....TTCTT--ACAGGACTGGCGCTT........................................................................................................................................................................................................................................................................2011.00100000000000001000
.............CAGGACTGGCGCTGGTGGGTT.................................................................................................................................................................................................................................................................2111.00100000000000001000
............ACAGGACTGGCGCTGGTGGT...................................................................................................................................................................................................................................................................2011.00100000000000001000
.....TTCTT--ACAGGACTGGCGCTGGTGGGCAGCA..............................................................................................................................................................................................................................................................3011.00100000001000000000
.CTACTTCTT--ACAGGACTGGCGTA.........................................................................................................................................................................................................................................................................2311.00100000000000001000
...ACTTCTT--ACAGGACTGGCGCT.........................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................AACGTGGTCACCTGCGGCTTT..................2111.00100000000000001000
..TACTTCTT--ACAGGACTGGCGTA.........................................................................................................................................................................................................................................................................2211.00100000000000001000
..........................................................................................................................................................................................................................................................CCAACGTGGTCACCTGCGGC.....................2011.00100001000000000000
.CTACTTCTT--ACAGGACTGG.............................................................................................................................................................................................................................................................................1911.00100000000000001000
..............AGGACTGGCGCTGGTGGGCA.................................................................................................................................................................................................................................................................2011.00100000000000001000
.........T--ACAGGACTGGCGCTGGTTA....................................................................................................................................................................................................................................................................2011.00100000000000001000
...................................................................................................................................................................................................................................................................TCACCTGCGGCTCCATCCTTT...........2121.00200000000000002000
............ACAGGACTGGCGCTGGTGG....................................................................................................................................................................................................................................................................1911.00100000000000001000
........TT--ACAGGACTGGCGCTGGTTT....................................................................................................................................................................................................................................................................2111.00100000000000001000
...ACTTCTT--ACAGGACTGGCGTA.........................................................................................................................................................................................................................................................................2111.00100000000000001000
.........T--ACAGGACTGGCGCTGGTTTT...................................................................................................................................................................................................................................................................2120.50100000000000001000
...............................................................................................................................................................................................................................................................GTGGTCACCTGCGGCTCCAA................2020.50100000000000001000
..............AGGACTGGCGCTGGTGGGTT.................................................................................................................................................................................................................................................................2020.50100000000000001000
............ACAGGACTGGCGCTGGTGTTT..................................................................................................................................................................................................................................................................2120.50100000000000001000
..............AGGACTGGCGCTGGTGGTA..................................................................................................................................................................................................................................................................1930.33100000000000001000
..............AGGACTGGCGCTGGTGGTAT.................................................................................................................................................................................................................................................................2070.14100000000000001000
droSec2
ACTACTTCTT--ACAGGACTGGCGCTGATGGGCAGCATTTCCAGGGGAGCCGGTAAGTTGCGACCTGAAG-----CAAGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CGCCCCGCT-----TC-TTGAA----CCTTTCGTGGC-------------------CATCGTT-----------------AAT-GCTTATCTT-GTATTCCATCTTGACCCT----GCTGGAAACAGCCACAGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTTAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......CTT--ACAGGACTGGCGCTGATGGGCA.................................................................................................................................................................................................................................................................2511.0010100
.........T--ACAGGACTGGCGCTGATGGGCA.................................................................................................................................................................................................................................................................2311.0010100
.......CTT--ACAGGACTGGCGCTGATGGGC..................................................................................................................................................................................................................................................................2411.0011000
......TCTT--ACAGGACTGGCGCTGATGGG...................................................................................................................................................................................................................................................................2411.0010100
.........T--ACAGGACTGGCGCTGATGGGCAGC...............................................................................................................................................................................................................................................................2511.0010100
............ACAGGACTGGCGCTGATGGGCA.................................................................................................................................................................................................................................................................2211.0010010
dm3
ACTACTTCTT--ACAGGACTGGCGCTGGTAGGCAGCATTTCCAGGGGAGCCGGTAAGTGGCGACCTGAAA---C-AAAGT-----CGCGTCTATGTGGTCTTCTCTGATTGGC-CGCCCCT--CT---TT-CTGAA----CCTTCCGTGGC-------------------CATAGTT-----------------AAT-GCTTATCTT-ATATTCTATCTTGACCCT----GCTGAACACAGCCACCGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTGCTCAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......CTT--ACAGGACTGGCGCTGGTAGGC..................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACTTCTT--ACAGGACTGGCGCTGGTAGG...................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGGCAGCATTTCCAGGGGAGCCGCC.............................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TT--ACAGGACTGGCGCTGGTAGGCAGC...............................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
...ACTTCTT--ACAGGACTGGCGCTGGT......................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............ACAGGACTGGCGCTGGTAGGCA.................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
............ACAGGACTGGCGCTGGTAGG...................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGGACTGGCGCTGGTAGGCAGC...............................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.CTACTTCTT--ACAGGACTGG.............................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACTACTTCTT--ACAGGACTGGCGCTGG.......................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GCAGCATTTCCAGGGGAGCCGC..............................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000
............ACAGGACTGGCGCTGGTAGGCAGC...............................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...ACTTCTT--ACAGGACTGGCGCT.........................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000
.........T--ACAGGACTGGCGCTGGTAGGCAGC...............................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACTACTTCTT--ACAGGACTGGCGCTGGT......................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CGTGGC-------------------CATAGTT-----------------AAT-GCA..........................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ACAGGACTGGCGCTGGTAGGCAG................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........T--ACAGGACTGGCGCTGGTAGG...................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
..........................................................................................CTATGTGGTCTTCTCTGATTGG...................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................CTTCTCTGATTGGC-CGCCCC...........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................................................................................................CCATCCTGAAGCTGCTCAAC2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GCATTTCCAGGGGAGCCG...............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCTT--ACAGGACTGGCGCTGGTAGGCAGC...............................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GCATTTCCAGGGGAGCCGGTAAGTG........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................CGAATCCAACGTGGTCACCTGCGGC.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........T--ACAGGACTGGCGCTGGTAGGCAGCATT............................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................CTTCCGTGGC-------------------CATAGTT-----------------AAT-GCT..........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCCAGGGGAGCCGGTAAGTGGCGAC...................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...ACTTCTT--ACAGGACTGGCGC..........................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACTTCTT--ACAGGACTGGCGCTGGTA.....................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTCTT--ACAGGACTGGCGCTGG.......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGGACTGGCGCTGGTAGGC..................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACTTCTT--ACAGGACTGGCGC..........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................CCAACGTGGTCACCTGCGGCT....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............AGGACTGGCGCTGGTAGGCAGCA..............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................ACTGGCGCTGGTAGGCAG................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
............ACAGGACTGGCGCTGGTAGGCAGCA..............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TCCGTGGC-------------------CATAGTT-----------------AAT-GCT..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATTCTATCTTGACCCT----GCTGA........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GCTGAACACAGCCACCGAA..........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTGGCGCTGGTAGGCAGC...............................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGGACTGGCGCTGGTAGGCA.................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCTT--ACAGGACTGGCGCTGGT......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................CTGGTAGGCAGCATTTCCAG.......................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................CACCTGCGGCTCCATCCT.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GTAGGCAGCATTTCCAGGGGAGC.................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..TACTTCTT--ACAGGACTGGCGCTGGT......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................A----CCTTCCGTGGC-------------------CATAGTT-----------------AAT-GCT..........................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CTACTTCTT--ACAGGACTGGCGCTGG.......................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................................AACGTGGTCACCTGCGGC.....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GACTGGCGCTGGTAGGCAGCATTTCC.........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................CCTGCGGCTCCATCCTGAAG.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AATCCAACGTGGTCACCTGCGGCTCC..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGGACTGGCGCTGGTAGG...................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........T--ACAGGACTGGCGCTGGTAGGCA.................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........T--ACAGGACTGGCGCTGGTAGGA..................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................GGCGACCTGAAA---C-AAAGT-----..............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAGGACTGGCGCTGGTAGGCA.................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGGCGCTGGTAGGCAGCATTTC..........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TCTT--ACAGGACTGGCGCTGGTAGGC..................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CTT--ACAGGACTGGCGCTGGTAGGCAGC...............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCGCTGGTAGGCAGCATTTCCAGGGGA...................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
droEre2
AATACTTCTC--ACTGGACTTTTGCTGGTGGTCAGCATTCGCAGGGGTGCCGGTAAGTTTCGACCTCGAA---G-AAAGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CGC--CACTCT---TT-CGGAG----CCTTTTGTGGC-------------------TATCATT-----------------AAT-GTTTATCTTTGTATTACATCTTTTCCCT----GCTAAATACAGCCACGGAATCCAACGTGGTCACCTGTGGCTCCATCCTGAAGCTCCTCAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.ATACTTCTC--ACTGGACTTTTGCTGGTGGT...................................................................................................................................................................................................................................................................2912.0020200000
...ACTTCTC--ACTGGACTTTTGCTG........................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................................................................................................................................................................................................CCAACGTGGTCACCTGTGGCTCCATCCT.............2811.0010100000
............ACTGGACTTTTGCTGGTGGTCAGC...............................................................................................................................................................................................................................................................2411.0011000000
....................................................................................................................................................................................................................................................................CACCTGTGGCTCCATCCTGA...........2011.0010100000
droYak3
AATACTTCTC--GCAGGACTTTTGTTGGTGGTCAGAATTCCCAGCGGTGCCGGTAAGTTTCGACTTCAAG---A-AAGGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CGCCCCT--CT---TT-CTGAG----CCTTTCGTGGC-------------------TATCAGT-----------------AAT-GTTTATCTTCGTACTCCATCTTGTCCCT----GCTGAAAACAGCCACGGAATCCAACGTGGTCACCTGTGGCTCCATCCTGAAGCTACTTAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................ATCCAACGTGGTCACCTGT........................1911.00101000000000
....................................................................................................................................................................................................................................................................CACCTGTGGCTCCATCCTGAAGCTA......2511.00101000000000
droEug1
ACTACTCCTA--GCGGGATTGGCGCTAGTCATCAGCCTTCTCAACGGTGCCGGTAAGTTTCGACCCCTAG---G-AAAGT-----TGCGTCTATGTGGTCTTCTGTGATTGGC-CACGCCGTTCT---TT-TCGAC----CCTTTGGTG--CTGATTA----TC---GCAGAGAATT-----------------AAT-GTTTATCTCGGTGC-ACATCTTTTCACT-----CT-GAAACAGCAACGGAATCTAACGTGGTCACCTGCGGCTCCATCCTGAAGCTCCTTAACSizeHit CountTotal NormTotal
No Reads
droBia1
ACTACTTCTT--GTGGGACTGGCGCTGGTCAGCAGCCTCTCCAGCGGTGCCGGTAAGTTTCGACCCCGGT---T-AAACT-----CGCGTCTATGTGGGCTTCTGTGATTGGC-CACGCCACTCT---TT-TCGAC----CCCGGACAC--TCCACAA----TC---G-GCAGTATT-----------------AAT-GTTTATCTCTTT-CCATATCTTCCCTAC----TCCGGAAAAAGCCACGGACTCGAACGTGGTCACCTGCGGCTCCATCCTGAAGCTCCTCAACSizeHit CountTotal NormTotal
No Reads
droTak1
ACTACTCCTC--GCGGGACTGGCGCTGGTCAGCAGCCTCTCCAGCGGTGCCGGTAAGTTTCGAGCCCCCG---G-AAAGT-----AGCGTCTATGTGGTCTTCTGTGATTGGC-CACGCCACTCT---TT-TCGAC----CCTTTGCTG--TCCATAA----TC---G-CCAGCAAT-----------------AAT-CTTTATCCG-CTAACGTATCTCCCTACC----TTCGGAAACAGCCACGGAATCCAACGTGGTCACCTGCGGCTCCATCCTGAAGCTACTCAACSizeHit CountTotal NormTotal
No Reads
droEle1
ACTATTCCTC--GCGGGACTGGCTCTGGTCAGCAGCCTATCCAGCGGTGCCGGTAAGTCTTGACCCCGCG---G-AAAGT-----TGCGTCTATGTGGTCTTCTGTGATTGGC-CACGCCGCTCT---TT-TCGAA----CCTTTGGTG--CTCATGG----TC---GCCCAGCATT-----------------AAT-GTTTATCTTGGTACACCATCTTCTCCAC----TCCGGAAACAGCCACGGATTCCAATGTGGTCACCTGCGGCTCCATACTGAAGCTGCTGAACSizeHit CountTotal NormTotal
No Reads
droRho1
ACTACTGCTC--GCCGGATTGGCTCTGGTCAGCAGCCTTTCCAGTGGTGCCGGTAAGTTTCGACCCCGAG---G-AAAGT-----CGCGTCTATGTGGTCTTCTGTGATTGGC-CACGCCGCGCT---TT-TCGAA----CCTTTCGTG--CTAATACTGAGTC---GCCCAGCTTT-----------------AAT-GTTTATCTTTGTACACCATCCTCTCTCC----TCCGAAAACAGCCACGGAATCCAACGTGGTTACCTGCGGCTCCATCCTGAAGCTCCTGAACSizeHit CountTotal NormTotal
No Reads
droFic1
ACTACTCCTT--GCGGGCCTGGCCCTGGTCAGCAGCCTCTCAAGCGGTGCCGGTAAGTTGTGACCCCAAG---G-GAAGT-----TGCGTCTATGTGGTGTTCTGTGATTGGC-CACGCCGCA-----TG-TTGGC----CCTTGGATG--CCTAAGT----CT---GCCCATCATT-----------------AAT-ATTTTTCTCGGAACACTATCTCCCTAAC----TACGAAAACAGCAACGGAATCCAATGTGGTCACCTGCGGCTCTATTCTGAAGCTCCTGAACSizeHit CountTotal NormTotal
No Reads
droKik1
GCTACTCCTG--GCCGGGCTTGCACTTGTCAGCAGCATATTCAGCGGAGCCGGTAAGTTGAAACCCAGC----C-AGGGA-----CGCGGCTATGTGGTCTTCTGTGATTGGC-CACGCCGCTGT---TC-CCGCC------TCCCCT---------------------CCGGACTT-----------------CAT-GTTAATCTCGATTTACCATCTTCCAAAC----CCCGGCGTCAGCTACGCAAACCAACGTGGTGACCTGCGGCTCCATACTGAAGCTTCTGAACSizeHit CountTotal NormTotal
No Reads
droAna3
TCTACTGTTC--GTTGCGCTAGCGCTTGTCAGCTGTCTTTACAGCGGAGCCGGTAAGTTGCGGCATAACGCGATAGACGCCGCGGCGGGATTATGTGGTCTTCTGTGATTGGC-CACGCCGCTCCGGTTGTCCGCC----CCCTTGGGG--CCACTAA----TTGTAATCTGGCTTT-----------------AAC-GTTCCACTCTGTTTCTTATCTTCCAATC----TCGGCCTGTAGCCACCCAGACGAACGTGGTTACCTGCGGTTCCATTTTGAAGCTCCTTAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............GTTGCGCTAGCGCTTGTCAGC..................................................................................................................................................................................................................................................................2111.001010000
.........C--GTTGCGCTAGCGCTTGTCAGC..................................................................................................................................................................................................................................................................2211.001001000
..TACTGTTC--GTTGCGCTAGC............................................................................................................................................................................................................................................................................1911.001100000
............GTTGCGCTAGCGCTTGTCAGCT.................................................................................................................................................................................................................................................................2211.001000001
droBip1
ACTACTGCTC--GTCGCTTTTGCGCTTGTCAGCTGTCTCTCCAGCGGAGCCGGTAAGTTTCGGCACAACGCGATAGACGCCGCGGCGGGATTATGTGGCCTTCTGTGATTGGC-GACGCCGCTCCGGTTGTCCGCC----CC-CTTGAGG-CCACAAA----TTGTAATCTGGCTTT-----------------AAC-GTTCCACTCTGTTTCTTATCTTCCAATC----TCGTCCTGCAGCCAACCAGGCAAACGTGGTAACCTGTGGTTCCATTTTGAAGCTCCTTAACSizeHit CountTotal NormTotal
No Reads
dp5
ACTATTGCTA--CCCGTACTGGCCCTGATTAGCTGCCTGAGCATCGTCTCCGGTAAGTGCCAGCGAGAAGCCGCAGAGGC-----GGCGTTTATGTGGTCTTCTGTGATTGGC-CACGCCGCCCC---TT-TACAA-------------T-------------------GCAGAAGT-----------------ATT-ATTGATCTA------TTATCTTTTAATC-ATCTGCGAGTGTAGCCACCCAAACCAATGTGGTGACGTGTGGCTCCATACTAAAGCTCCTCAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................TGGCCCTGATTAGCTGCCTGAGCATCG.....................................................................................................................................................................................................................................................2711.0010100000000
.........................TGATTAGCTGCCTGAGCATC......................................................................................................................................................................................................................................................2011.0010000000010
........................................................................................................................................................................................................................................................AACCAATGTGGTGACGTGTGG......................2111.0010100000000
...................................................................................................................................................................................................................................................ACCCAAACCAATGTGGTGACGTGTG.......................2511.0010100000000
...............................................................................................................................................................................................................................................................GTGGTGACGTGTGGCTCC..................1811.0010001000000
.....TGCTA--CCCGTACTGGCCCTGATTAGC..................................................................................................................................................................................................................................................................2611.0010100000000
..............................................................................................................................................................................................................................................................TGTGGTGACGTGTGGCTCCATA...............2211.0010000100000
.............................TAGCTGCCTGAGCATCGTCTCCGCC.............................................................................................................................................................................................................................................2511.0010100000000
droPer2
ACTATTGCTA--CCCGTACTGGCCCTGATTAGCTGCCTGAGCATCGTCTCCGGTAAGTGCCAGCGAGAAGCCGCAGAGGC-----GGCGTTTATGTGGTCTTCTGTGATTGGC-CACGCCGCCCC---TT-TACAA-------------T-------------------GCAGAAGT-----------------ATT-ATTGATCTA------TTATCTTTTAATC-ATCTGCGAGTGTAGCCACCCAAACCAATGTGGTGACGTGTGGCTCCATACTAAAGCTCCTCAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................TTTTAATC-ATCTGCGAGTGTAGCCACC.............................................2712.002200000
............................................................................................................................................................................................................................................................AATGTGGTGACGTGTGGCTCC..................2111.001000001
.........................TGATTAGCTGCCTGAGCAT.......................................................................................................................................................................................................................................................1911.001000010
........................................................................................................................................................................................................................................................AACCAATGTGGTGACGTGTGG......................2111.001000001
...........................................................................................................................................................................................................................................................CAATGTGGTGACGTGTGGC.....................1911.001000001
droWil2
GGTGAGCTGAGAGC-TGAGTCTCATTGCTTAGCGGCTT-------------------------------------------------TTTTTATGTGGTCTTCTGTGATTGGC-CACGCCGCTCA---CA-ACGCCCCCCCG---CTTGCC-------------------CACCGCT-----------------AATCGCTAAAATC-GAATTTCTTTCTGCTTTTG---TTGTTATCCAGCCACCCAGACAAATGTTGTGACGTGTGGTTCCATACTAAAGCTGCTCAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................GACAAATGTTGTGACGTGT........................1911.00100010
..........................................................................................................................................................................................................................................................CAAATGTTGTGACGTGTGGTTCCATA...............2611.00101000
.......................................................................................................................................................................................................................................................AGACAAATGTTGTGACGTGTGGTTCC..................2611.00110000
droVir3
ACTGATGTTC--GTTGTTTTAGCGCTAATCAGCTGTCTGCCTAATAACAATGGTGCGTATTTTGCAGCAG---CGGCGTC-----GCTGTTTATGTGGTGTGCTGTGATTGGC-CACTCAGCTCT---TG-CCGCC----CTATAAATA--TCAATTATACGAT---TCCTATCAAT-----------------AAT-AA-------------------T---AAA----TACTCTCACAGCTGTTCAGAATAACTATGTGACATGTGGCTCCATATTGAAATTGCTCAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
ACTGATGTTC--GTTGTTTTAGCGCT.........................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
droMoj3
ACTACTCTTC--GTTGCTCTAGCGCTGATCAGCAGCATACCCTATAACAATGGTACGTATATT-------------TTGT-----GGCGTTTATGTGGGCCGCTGTGATTGGC-CACGAAGCCTT---TT-CCGCC----CC--ACAAAGCGCAATTTTCTGAT---TCCTATCAATACAATAACAGCAACAACAACAACAAAAAAC-G--------------ACT----ACTTCTTTCAGCTGCCCAGACCAACTATGTGACATGTGGTTCCATACTGAAATTGCTCAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................GGTTCCATACTGAAATTGCTC...2111.001000010
droGri2
----------------------------------------------------------------------------------------GTTTATGTGGTTGGCTGTGATTGGCCCACGCCGCATT---TT-CCGCC----CCCCTCAAA---------------------AAAAAAA-----------------GAA-ACTTAAATT-GAAA-CGATTTCC-----------CAAGTTTAGCTGCCAAGACGAACTACGTTACATGTGGCTCCATACTGAAATTGCTCAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................ACGTTACATGTGGCTCCAC................1911.00110

Generated: 05/19/2015 at 02:47 PM