ID:

dsi_20248

 Coordinate:

3l:4845642-4845791 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.2 -27.8 -27.5

Flybase annnotation

CDS [3l_4845792_4845875_+]; exon [3l_4845792_4845875_+]; intron [3l_4844537_4845791_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTTCCGTTTGGCTCGGGCTTGATGGATGCTTCAAAGCCAATGCCGCAATCTTAGCAGGCCACCTTCGACCACACGCCGCGTGATCATTGAAGAAATGTGCTGATGTGTGTTTTGCGCCTCGGACAAATCATTACCAAACTACTCGAGTGTGCCCTCATGCTAAAAAATATTTAATTTGTTTTTTCTTTTCTATTTTTCAGTACTGCTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGTCGAGTGAAC
**************************************************((((((((((((((((((...((((...))))....))))))...(((.((((.((((.....)))).))))))).....................))).)))....))))))((((((.......))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
............................................................................CGCGTGATCATTGAAGAAATGTGCTG.................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................CGCCGCGTGATCATTGAAGAAATG......................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TGGCCTGCTGCCTGCAGGAATCGGG................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................TGATCATTGAAGAAATGTGCTGATGTG............................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGCCTGCAGGAATCGGAGG................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................TTGAAGAAATGTGCTGATGTGTGTTT.......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................GCTGATGTGTGTTTTGCGCCTC.................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................TGTGCTGATGTGTGTTTTGCGCC.................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................ATTGAAGAAATGTGCTGATG................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCTGCAGGAATCGGAGGCC............... 19 0 1 1.00 1 0 0 0 1 0 0 0 0
..TCCGTTTGGCTCGGGCTTGATG.................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................GCTGGCCTGCTGCCTGCAGGAATCGGG................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0
GTTCCGTTTGGCTCGGGCT....................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAGGAATCGGAGGCCACGCGTC........ 22 0 1 1.00 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................GGCCTGCTGCCTGCAGGAATCGGAGGCC............... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
......................TGGATGCTTCAAAGCC.................................................................................................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................GCGCCTCGGACGAAT.......................................................................................................................... 15 1 3 0.67 2 0 0 1 0 0 1 0 0
.............................................................................................................................................................................................................CTGGCCGGCCGCCTGCAGGA......................... 20 2 4 0.50 2 0 0 2 0 0 0 0 0
.....................................................................................ATTGAAGAATTATGCTGAT.................................................................................................................................................. 19 2 7 0.43 3 3 0 0 0 0 0 0 0
...............................................................................................................TAGCGCCTCGGACGAAT.......................................................................................................................... 17 2 7 0.29 2 0 0 1 0 0 0 1 0
..............................................................................................................GTAGCGCCTCGGACGAAT.......................................................................................................................... 18 3 20 0.25 5 1 0 2 0 0 2 0 0
........................................................................ACGCCGCGTGAGCGATGAA............................................................................................................................................................... 19 3 18 0.22 4 0 0 0 0 0 4 0 0
...............................................................................................................TAGCGCCTCGGACGAA........................................................................................................................... 16 2 19 0.21 4 0 0 0 0 0 1 3 0
..............................................................................................................TTAGCGCCTCGGACGAAT.......................................................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0
..................................................................................................................CGCCTCGGACAAATA......................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................TGAAGGTATCGGAGGCC............... 17 2 13 0.15 2 2 0 0 0 0 0 0 0
.................................................................................................................GCGCCTCGGACGAATA......................................................................................................................... 16 2 20 0.15 3 0 0 2 0 0 0 1 0
.................................................................................................................................ATTACCATACTACTCGG........................................................................................................ 17 2 9 0.11 1 0 0 0 0 0 0 1 0
...............................................................................................................TAGCGCCTCGGACGAATA......................................................................................................................... 18 3 20 0.10 2 0 0 2 0 0 0 0 0
..........................................................................................AGAATTGTGCTGATCCGTG............................................................................................................................................. 19 3 14 0.07 1 1 0 0 0 0 0 0 0
.....................................................................................................GATGTGGGTTTTGCGCG.................................................................................................................................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0
.............................................................................................................CTTTGCGCCTCGGACC............................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGCTGGACTGCAGCCTGC............................. 18 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

CAAGGCAAACCGAGCCCGAACTACCTACGAAGTTTCGGTTACGGCGTTAGAATCGTCCGGTGGAAGCTGGTGTGCGGCGCACTAGTAACTTCTTTACACGACTACACACAAAACGCGGAGCCTGTTTAGTAATGGTTTGATGAGCTCACACGGGAGTACGATTTTTTATAAATTAAACAAAAAAGAAAAGATAAAAAGTCATGACGACCGGACGACGGACGTCCTTAGCCTCCGGTGCGCAGCTCACTTG
**************************************************((((((((((((((((((...((((...))))....))))))...(((.((((.((((.....)))).))))))).....................))).)))....))))))((((((.......))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................GGTTTGATGAGCTGA...................................................................................................... 15 1 11 2.36 26 10 0 10 5 0 0 0 0 1
..................................................................................................................................AAGGGTTTGATGAGCT........................................................................................................ 16 1 3 2.33 7 7 0 0 0 0 0 0 0 0
................................................................................................................................GTAAGGGTTTGTTGAGCTG....................................................................................................... 19 3 20 1.25 25 1 19 0 0 3 0 2 0 0
................................................................................................................................GTAAGGGTTTGTTGAGCT........................................................................................................ 18 2 9 1.11 10 3 3 1 1 1 1 0 0 0
................................................................................................................................GTAAGGGTTTGATGAGCT........................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................GTAAGGGTTTGTTGAGCTGA...................................................................................................... 20 3 16 0.56 9 0 5 0 0 0 3 0 1 0
............................................................TGGAAGCTGGTGTTCGGCG........................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................AGGGTTTGATGAGCT........................................................................................................ 15 1 12 0.50 6 3 0 3 0 0 0 0 0 0
.................................................................................................................................TAAGGGTTTGATGAGCT........................................................................................................ 17 1 2 0.50 1 0 0 0 1 0 0 0 0 0
...................................................................................................................................AGGGTTTGATGAGCTGA...................................................................................................... 17 2 14 0.36 5 3 0 2 0 0 0 0 0 0
..................................................................................................................................AAGGGTTTGATGAGCTGA...................................................................................................... 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................AAGGGTTTGATGAGC......................................................................................................... 15 1 8 0.25 2 2 0 0 0 0 0 0 0 0
................................................................................................................................GTAATGGTTTGTTGAGCTGAG..................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0
.AAGGCCACCCGCGCCCGAAC..................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0
................................................................................................................................GTAACGGTTTGATGAGCTG....................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 1 0
..............................................................................................................................TCGTAAGGGTTTGATGA........................................................................................................... 17 2 18 0.11 2 1 0 1 0 0 0 0 0 0
...............................................................................................................................AGTAAGGGTTTGTTGAGCTG....................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................AAAAAGAAAAGTTTAAATGTCAT................................................ 23 3 9 0.11 1 1 0 0 0 0 0 0 0 0
................................................................................................................................GTAAGGGTTTGTTGAGC......................................................................................................... 17 2 20 0.10 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................CGTAATGGTTTGTTGAGCTG....................................................................................................... 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGCGGGACGTCCTTAGC..................... 17 2 12 0.08 1 0 0 0 1 0 0 0 0 0
................................................................................................................................GTAAGGGTTTGATGA........................................................................................................... 15 1 17 0.06 1 0 0 1 0 0 0 0 0 0
...........................................................GTCGAAGCTGATGTGCG.............................................................................................................................................................................. 17 2 18 0.06 1 1 0 0 0 0 0 0 0 0
.......................................................TCCGGTTGAAGATGGTG.................................................................................................................................................................................. 17 2 19 0.05 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................ATGGTTTGTTGAGCTGAGA.................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................GGAGTACGGTTTATTAT................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................AGGGTTTGTTGAGCTCA...................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:4845592-4845841 + dsi_20248 G---------------TTCCGTT---------------T------------G----GC-------------------TCGG-----------GC-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCTTAGCAGGCCACCTTCGACCAC--ACGCCGC--GTGATCAT-TG--------AAGAAATGT--GCT----GATGTGTGTT----TTGCGCCTCGGAC--AAATCATT-----ACC----AAAC----TACTCGAGTGTG-------CCCTCATG-CTA-----------------AA-AAAT-----------------------------------AT---------TTA---------ATTT---------GT----TTTTTCTTTT--CTATTTTTCAGTACTGCTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGTCGAGTGAAC
droSec2 scaffold_2:4886786-4887036 + G---------------TTCCGTT---------------T------------G----GC-------------------TTGG-----------GC-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCTTAGCAGGCCACCTTCGACCAC--ACGCCGC--GTGATCAT-TG--------AAAAAATGT--GCT----GATGTGTGTT----TTGCGCCTCGGAC--AAATCATT-----CCC----AAAC----TACTCGAGTGTG-------CCCTCATGTCTA-----------------AA-AAAT-----------------------------------AT---------TTA---------ATTA---------GT----TTTTTCTTCT--ATATTTTGCAGTACTGTTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGACGAGTGAAC
dm3 chr3L:4900099-4900326 + G---------------TTCCGTT---------------T------------G----GC-------------------TTGG-----------GT-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCTTACCAGGCCACCTTCGACCAC--ACGCCGC--GTGATCAT-TG--------AAAAAATGT--GT---ATGATGTGTGTT----TTGCGCCTCGGAC--GAATCACT--------------------------------------------ATGTCTA-----------------AC-AAAT-----------------------------------AT---------TAA---------ATTT---------GT----ATATTCTTTT--CTATTCTGTAGTACTGTTGGCCTGCTGCCTGCAAGAATCGGAGGCCACGCGACGTGTGAAC
droEre2 scaffold_4784:7618543-7618766 + G---------------TTCCGTT---------------T------------G----GC-------------------TTG------------GT-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCGTAGTGGGCCACCTTCGACCAC--ACGCCGC--GTGATCAC-TG--------AAAAAATGT--GCT----GATTTGTGTT----TTGC---------------------------------------TACTCGAGTG---------CCCCCCTGTCTT-----------------AC-AAAC-----------------------------------AT---------TTA---------ATTC---------CA----ATTTTCTACT--CTACTTTGCAGTGCTGCTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGCCGTGTGAAC
droYak3 3L:5486092-5486341 + G---------------TTCCGTT---------------T------------G----GC-------------------TTGG-----------GG-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------AT-------------CTCCGACCAC--ACGCCGC--GTGATCACTGAAATCATTGAAAAAATGT--GCTGTGTGATGTGTGTT----TTGCGCCTT------AAATCACT-----CCC----AATC----TACTCGAGTG---------CCCCCATGTCTA-----------------AT-TAAT-----------------------------------AT---------TTT---------TTTT--------TTTTTGTATTTTCTATT--CTATTTTGCAGTACTGCTCGCCTGCTGTCTGCAGGAATCGGAGGCCACGCGACGTGTGAAC
droEug1 scf7180000409466:2683635-2683897 + G---------------TTCCGTTCCG-----AGTGGTTTGGTTCGCTTTATG----GC-------------------TTGG-----------GGTTGGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCGCAGCGGGCCACCTTCGACCAC--ACGCGGC--GTCTTCGT-GA--------AAAAAAAAT---------TATATGTCTT----CTACGCCTCGGAC--AAATCACTCT----CC----AACA----TGCTCGAGTG---------CCCCA-TGTCTA-----------------AT-ATAA-----------------------------------AT---------TTT---------ATTT--------------------CGAT-ATTTTTTTTGCAGTTCTGCTGGCCTGCTGTCTGCAGGAATCGGAGGCCACGCGCCGTGTGAAC
droBia1 scf7180000302428:2071986-2072215 - G---------------TTCCGTT---------------TGGCT-GCTTTGTG----GC-------------------TTGG-----------GC-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------TTCTCGACGGGCCACCTTCGGCCAC--ACGCGGC--GG-TTGGG-TA--------AAAAATTAT----------------------------------AC--AAATCACT-----CCCAGAAAACA----TGCTCGAGTG---------CCCCCACCTCCA-----------------AT-GTA-------------------------------------T---------CTT---------TTT---------------------CGCT-TTTTATTTCGCAGTTCTGCTGGCTTGCTTCTTGCAGGAATCGGAGGCCACGCGCCGTGTGAAC
droTak1 scf7180000415157:28170-28407 + G---------------TTCCGTT---------------TGGCTCGCTTTACG----GC-TTG----------------TGG-----------GG-TTGATGGTTGAGGCTTCAAAGCCAATGCCGCG------------------------------------AAAGCAGCGGGCCACCTTCGACCAC--ACGCGGTGATAGATGGT-TA--------AAAAAAATA---------TAT--ATGT-------------------------ACT-----CCCAGA-AATA----AGCTCGAGTG---------CCCATATGTCTA-----------------AT-ATA-------------------------------------T---------TTT---------ATTT--------------------ATA--ATTTTTTTTGCAGTTCTGCTGGCTTGCTTTTTGCAGGAAACGGAGGCCACGCGACGTGTGAAC
droEle1 scf7180000491249:5865037-5865285 + G---------------TTCCGTTCCG-----AGCGCTTTGGCTCGCTTCATG----GC-------------------TGGGATTT------GAT-TTGATGA---CTGCTTCAAAGCCAATGC-------------------------------------------------------CTTCGACCAC--ACGCGGC--GTATACGT-TA--------AATGT------------------GTGTT-TTTTTGCGCCTCGGAC--AAATCACT-----CGC----AACA----TGCTCGAGTG---------CCCCC-TGTCTA-----------------AT-TTAT-----------------------------------AT---------A-----------CT-T----ATTTTTT----ATTTTTGATT--CTTTTTCGCAGTTCTGCTGGCCTGCTGCTTGCAGGAATCGGAGGCCACGCGACGCGTGAAC
droRho1 scf7180000772813:8090-8344 - G---------------TTCCGTTCCGAAGCGAGCGGTTTGGCTCGCTTTATG----GC-------------------TGGG-----------TT-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCGCAGCGGGCCACCTTCGACCAC--ACGCAGC--GTATACGT-TA--------AATATA------------------TGTT----TTGCGCCTCGGAC--AAATCACT-----CCC----AACA----TGCTCGAGTG---------CCCCC-TGTCTA-----------------AA-ATAC-----------------------------------AT---------TTT-----------TT--------------------AAAT-ATTTTTTTTGCAGTTCTGCTGGCTTGCTGCTTGCAGGAATCGGAGGCCACGCGACGCGTGAAC
droFic1 scf7180000454065:661424-661693 - G---------------CTCCGTTCCG-----AGCGGTTTGGCTCGCTTTATG----GC-------------------TTGG-----------GG-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCGCAGCGGGCCACCTTCGACCAC--ACGCGGC--GAGTTCGT-TA--------AATACATAT--------------ATGTT----TTGCGTCTCGGAC--AAATCACT-----CCC----AACA----TGCTCGAGTG---------CCCCC-TGTCTA-----------------AT-AAAT-----------------------------------AT---------ATA---------TTTTTTAT-GTTTTT----TTTTTCGATT--TTTATTCGCAGTTCTGCTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGGCGCGTGAAC
droKik1 scf7180000302351:524507-524739 + G---------------TTCCGTTT--------------TGGCTCGCTTTATG----GC-------------------TCCG-----------GT-TTGATGG---ATGCCTCAAAGCCATA----------------------------------AAGCCACCTTCGAAGGTGG--------------------------------------------------------------------------------TCTTCGGAC--AAATCACA-----GCT----AACTCGAGTGCTCGAGTG---------CCTCT-CGTTTT-----------------ACTCTG------------------------TAATTATT----ATATGTTTTATTTAATTAATTTTA-TC---------TT----CT--TTTTTT--CTGGTTTTTAGTTTTGCTGGCCTGCGTTTTGCAGGAAACGGAGGCCACGCGACGCGTGAAC
droAna3 scaffold_13337:2993686-2993890 + G---------------TTCCGTTCCG-----AGCGGTTTGGCTCGCTTTATT----GC-------------------CTC------------GC-TTGATGG---ATGCTTCAAAGCCATTGCCGCACTAGGAATCCAGCTCGAAATCAGAGTTGGAGTCACCATCGCAGCTGGCCATCTTCGACCAC--ACGCGGC--GCGTTCTT-CA--------AATATA------------------TGTT----CTGCGTCTCGGAC--AAATTGTTTTACTACC----AACA----TGGTCGAGTG---------GCCCC-T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396378:300871-301075 + G---------------TTCCGTTCCG-----AGCGGTTTGGCTCGCTTTATT----GC-------------------CTC------------GC-TTGATGG---ATGCTTCAAAGCCATTGCCGCACTCGGAATCCAGCTCGGAATCGGAGTTGGAGTCACCATCGCAGCTGGCCACCTTCGACCAC--ACGCGGC--GCGTTCTT-CA--------AATATA------------------TGTT----CTGCGTCTCGGAC--AAATTGTTTTACTACC----AACA----CGGTCGAGTG---------GCCCC-T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group8:3054546-3054777 + G---------------TTCCGTTCCG-----TGCGGTCC------------------------------------------------------G-TTGATGG---ATGCCTCAAAGCCA----------------------------------------------CACAGCTGGTGGC---TGACCAC--ACACGGCGCGCGTTCTT-CA--------AATAAATAT--------------GTATT----CTGCGACTTAGACTTGAATTGTT------------AACA----TGGTCGAGTG---------GCTCT-TGTACA-----------------A------------------------AGTTTTAAATA--------------------------------T----ATTTTTTAT-------GGATTTGCTTCTTTGCAGTTTTGCTGGCCTGCTGCTTGGAGGAGACGGAGGCCACGCGACGCGTTAAC
droPer2 scaffold_465:13064-13295 - G---------------TTCCGTTCCG-----TGCGGTCC------------------------------------------------------G-TTGATGG---ATGCCTCAAAGCCA----------------------------------------------CACAGCTGGTGGC---TGACCAC--ACACAGCGCGCGTTCTT-CA--------AATAAATAT--------------GTATT----CTGCGACTTAGACTTGAATTGTT------------AACA----TGGTCGAGTG---------GCTCT-TGTACA-----------------A------------------------AGTTTTAAATA--------------------------------T----ATTTTTTAT-------GGATTTGCTTCTTTGCAGTTTTGCTGGCCTGCTGCTTGGAGGAGACGGAGGCCACGCGACGCGTTAAC
droWil2 scf2_1100000004511:10417527-10417811 - G---------------TTCCGTTCCG-----TTCCATT-----------CTG----GC----GAATAAACTTTTGGATGGTTTTTTCTCGTCAT-TTGATGG---ATAGTTCAAAGTCAAGATTG--------------------------------------------------------------------------ACGTTCTT-CA--------AATATTATA--------------GTTAT----TTGCAATTTGAAC--AATTTGTT-----AGCAGCTAATTTTATTCTTTGTTTT-GTTTTTTTTTTTTCTTTTTTGTTGAATTTCTTTTCTTAATTTGTGTT--------------------------------TT---------TTT---------CTTG---------CTTTGCTTTATTTACT--CTTCTTGACAGTTCTTATGGCCTGTTTGATGCAGGAAACGGAGGCCACGCGACGCGTTAAT
droVir3 scaffold_12758:620024-620212 + G---------------TTCCGTTCT------AGCGACTC-----------------GC-------------------TCC------------GT-TTGATGG---A------------------------------------------------------------------------------CCACACACACAGC--GCGTTCAT-CA--------AATATTTATTTGTT----TTTCTGTCTTTTTTTTGCGTATTCGAC--AAG---------------------------------------------------------------------------------------------------GTGTTAAATA-A----AT---------TTT-----------TG---------TT----ATTTTCGAT----TTGCTTACAGTTCTACTGGCATGCTTCATGCAGGAAACGGAGGCCACGCGACGCGTGAAT
droMoj3 scaffold_6680:1691699-1691932 + G---------------TTCCGTTCT------AGCGTCT----------CATCGTTCGC-------------------TCT------------GT-TTGATG-------C------------------------------------------------------------------------GGACCAC--ACACAAT--GCGTTCTT-CA--------AATAATTGT--TT------GTGTTTGTT----TTT-------------------------------------------------G---------CTCTCGCTTTTTGCTTATTTCTCTTTCTCTCTCTGTATTGATAATCATCGACAAGGTGCTAAATATCATAATT---------TGT---------ATTG-------------------TTATTC--TTTATTTACAGTTCTATTGGCATGCTGCTTGCAGGAAACAGAGGCCACGCGACGCGTGAAT
droGri2 scaffold_15110:861258-861469 - TTGTTTTTGGCCCGAGTTCCGTTCT------TGC---------CACGTTCC-----GCTCTG----------------TTT-----------GT-TTAATG---------------------------------------------------------------------------------GGCCAC--ACACAGC--GCGATCTT-CA--------CATATTTTA---TT----GTTATTTTTA-----------------------------------------TT----TTCTTTAGTT---------TTTTC--TCACA-----------------A------------------------GGTGTTAAATA-AAT--A----------------------ATTG-----GCTTCT----ATTTTTGGC------TCTTACAGTTCTTTTGGCATGCTGCTTGCAGGAAACAGAAGCAACGCGGCGTGTAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
G---------------TTCCGTT---------------T------------G----GC-------------------TCGG-----------GC-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCTTAGCAGGCCACCTTCGACCAC--ACGCCGC--GTGATCAT-TG--------AAGAAATGT--GCT----GATGTGTGTT----TTGCGCCTCGGAC--AAATCATT-----ACC----AAAC----TACTCGAGTGTG-------CCCTCATG-CTA-----------------AA-AAAT-----------------------------------AT---------TTA---------ATTT---------GT----TTTTTCTTTT--CTATTTTTCAGTACTGCTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGTCGAGTGAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................CGC--GTGATCAT-TG--------AAGAAATGT--GCT----G.....................................................................................................................................................................................................................................................................2612.00200000000002000000
...............................................................................................................................................................................................CGCCGC--GTGATCAT-TG--------AAGAAATG................................................................................................................................................................................................................................................................................2412.00200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCTGCTGCCTGCAGGAATCGGG...................2511.00100000000001000000
........................................................................................................................................................................................................TGATCAT-TG--------AAGAAATGT--GCT----GATGTG................................................................................................................................................................................................................................................................2711.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGCAGGAATCGGAGG.................1911.00100000000001000000
..............................................................................................................................................................................................................T-TG--------AAGAAATGT--GCT----GATGTGTGTT----T.......................................................................................................................................................................................................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................................GCT----GATGTGTGTT----TTGCGCCTC...............................................................................................................................................................................................................................................2211.00100000000001000000
................................................................................................................................................................................................................................TGT--GCT----GATGTGTGTT----TTGCGCC.................................................................................................................................................................................................................................................2311.00100000000001000000
.............................................................................................................................................................................................................AT-TG--------AAGAAATGT--GCT----GATG..................................................................................................................................................................................................................................................................2011.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAGGAATCGGAGGCC...............1911.00101000000000000000
.................TCCGTT---------------T------------G----GC-------------------TCGG-----------GC-TTGATG.............................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCTGCTGCCTGCAGGAATCGGG...................2711.00100100000000000000
G---------------TTCCGTT---------------T------------G----GC-------------------TCGG-----------GC-T..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAATCGGAGGCCACGCGTC........2211.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGCTGCCTGCAGGAATCGGAGGCC...............2811.00100100000000000000
...................................................................................................TGG---ATGCTTCAAAGCC............................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
.............................................................................................................................................................................................................................................................CGCCTCGGAC--AAATA....................................................................................................................................................................................................................................1560.17100000000100000000
droSec2
G---------------TTCCGTT---------------T------------G----GC-------------------TTGG-----------GC-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCTTAGCAGGCCACCTTCGACCAC--ACGCCGC--GTGATCAT-TG--------AAAAAATGT--GCT----GATGTGTGTT----TTGCGCCTCGGAC--AAATCATT-----CCC----AAAC----TACTCGAGTGTG-------CCCTCATGTCTA-----------------AA-AAAT-----------------------------------AT---------TTA---------ATTA---------GT----TTTTTCTTCT--ATATTTTGCAGTACTGTTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGACGAGTGAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCCTGCAGGAATCGGA...................2111.0010100
dm3
G---------------TTCCGTT---------------T------------G----GC-------------------TTGG-----------GT-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCTTACCAGGCCACCTTCGACCAC--ACGCCGC--GTGATCAT-TG--------AAAAAATGT--GT---ATGATGTGTGTT----TTGCGCCTCGGAC--GAATCACT--------------------------------------------ATGTCTA-----------------AC-AAAT-----------------------------------AT---------TAA---------ATTT---------GT----ATATTCTTTT--CTATTCTGTAGTACTGTTGGCCTGCTGCCTGCAAGAATCGGAGGCCACGCGACGTGTGAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGAATCGGAGGCCAC.............1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCAAGAATCGGAGG.................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.....................................................................................................................................................................................................................................GT---ATGATGTGTGTT----TTGCGCCT................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCCTGCAAGAATCGGAGGC................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCGGAGGCCACGC...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAATCGGAGGCCACGC...........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGTTGGCCTGCTGCCT...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCCTGCAAGAATCGGAGG.................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCAAGAATCGGAGGCCACGC...........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TTCCGTT---------------T------------G----GC-------------------TTGG-----------GT-TTGATGG---A........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCAAGAATCGGAGGC................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................GG---ATGCTTCAAAGCCAATGC.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCACGCGACGTGTGAAC2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGCAAGAATCGGAGGCCACGCGAC........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................G--------AAAAAATGT--GT---ATGATGTGTGTT----TTG.....................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCGGAGGCCACGCGACG.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCCTGCAAGAATCGGAG..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAGAATCGGAGGCCA..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAATCGGAGGCCACGCGACGTGTG...2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................ATGATGTGTGTT----TTGCGC..................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATCGGAGGCCACGCGAC........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGCAAGAATCGGAGGC................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCACGCGACGTGTGA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGCAAGAATCGGAGGC................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CGTT---------------T------------G----GC-------------------TTGG-----------GT-TTGATGG---.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAATCGGAGGCCACGCGACGTGTG...2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCTGCAAGAATCGGAGGCCACG............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................ATGT--GT---ATGATGTGTGTT----TTGC....................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................GT---ATGATGTGTGTT----TTGCGCC.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................CGTT---------------T------------G----GC-------------------TTGG-----------GT-TTGATGG---ATGCT....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAAGAATCGGAGGCCACGCGAC........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTGCAAGAATCGGAGG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
G---------------TTCCGTT---------------T------------G----GC-------------------TTG------------GT-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCGTAGTGGGCCACCTTCGACCAC--ACGCCGC--GTGATCAC-TG--------AAAAAATGT--GCT----GATTTGTGTT----TTGC---------------------------------------TACTCGAGTG---------CCCCCCTGTCTT-----------------AC-AAAC-----------------------------------AT---------TTA---------ATTC---------CA----ATTTTCTACT--CTACTTTGCAGTGCTGCTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGCCGTGTGAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATCGGAGGCCACGCGC.........2013.0031000200
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGCTGCCTGCAGGAATCGGAGGC................2712.0021000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGAATCGGAGGCCACGCGCCGTG.....2711.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGAGGCCACGCGCCGTGT....2211.0011000000
droYak3
G---------------TTCCGTT---------------T------------G----GC-------------------TTGG-----------GG-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------AT-------------CTCCGACCAC--ACGCCGC--GTGATCACTGAAATCATTGAAAAAATGT--GCTGTGTGATGTGTGTT----TTGCGCCTT------AAATCACT-----CCC----AATC----TACTCGAGTG---------CCCCCATGTCTA-----------------AT-TAAT-----------------------------------AT---------TTT---------TTTT--------TTTTTGTATTTTCTATT--CTATTTTGCAGTACTGCTCGCCTGCTGTCTGCAGGAATCGGAGGCCACGCGACGTGTGAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCTCGCCTGCTGTCTGCA............................2311.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGCAGGAATCGGAGGCCACGC...........2611.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGGAATCGGAGGCCACGCGACGTGT....2911.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGGAGGCCACGCGACGTGTG...2411.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCAGGAATCGGAGGC................1911.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAATCGGAGGCCACGCGACGTGT....2611.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCTCGCCTGCTGT.................................1811.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGCAGGAATCGGAGGC................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCACGCGACGTGTGAAC2111.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGGAGGCCACGCGACGTGT....2311.00101000000000
......................................................................................................................................................................................................................ATTGAAAAAATGT--GCTGTGTGATGT.................................................................................................................................................................................................................................................................2511.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCCTGCTGTCTGCAGGA.........................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGCAGGAATCGGAGGC................2111.00100000010000
droEug1
G---------------TTCCGTTCCG-----AGTGGTTTGGTTCGCTTTATG----GC-------------------TTGG-----------GGTTGGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCGCAGCGGGCCACCTTCGACCAC--ACGCGGC--GTCTTCGT-GA--------AAAAAAAAT---------TATATGTCTT----CTACGCCTCGGAC--AAATCACTCT----CC----AACA----TGCTCGAGTG---------CCCCA-TGTCTA-----------------AT-ATAA-----------------------------------AT---------TTT---------ATTT--------------------CGAT-ATTTTTTTTGCAGTTCTGCTGGCCTGCTGTCTGCAGGAATCGGAGGCCACGCGCCGTGTGAACSizeHit CountTotal NormTotal
No Reads
droBia1
G---------------TTCCGTT---------------TGGCT-GCTTTGTG----GC-------------------TTGG-----------GC-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------TTCTCGACGGGCCACCTTCGGCCAC--ACGCGGC--GG-TTGGG-TA--------AAAAATTAT----------------------------------AC--AAATCACT-----CCCAGAAAACA----TGCTCGAGTG---------CCCCCACCTCCA-----------------AT-GTA-------------------------------------T---------CTT---------TTT---------------------CGCT-TTTTATTTCGCAGTTCTGCTGGCTTGCTTCTTGCAGGAATCGGAGGCCACGCGCCGTGTGAACSizeHit CountTotal NormTotal
No Reads
droTak1
G---------------TTCCGTT---------------TGGCTCGCTTTACG----GC-TTG----------------TGG-----------GG-TTGATGGTTGAGGCTTCAAAGCCAATGCCGCG------------------------------------AAAGCAGCGGGCCACCTTCGACCAC--ACGCGGTGATAGATGGT-TA--------AAAAAAATA---------TAT--ATGT-------------------------ACT-----CCCAGA-AATA----AGCTCGAGTG---------CCCATATGTCTA-----------------AT-ATA-------------------------------------T---------TTT---------ATTT--------------------ATA--ATTTTTTTTGCAGTTCTGCTGGCTTGCTTTTTGCAGGAAACGGAGGCCACGCGACGTGTGAACSizeHit CountTotal NormTotal
No Reads
droEle1
G---------------TTCCGTTCCG-----AGCGCTTTGGCTCGCTTCATG----GC-------------------TGGGATTT------GAT-TTGATGA---CTGCTTCAAAGCCAATGC-------------------------------------------------------CTTCGACCAC--ACGCGGC--GTATACGT-TA--------AATGT------------------GTGTT-TTTTTGCGCCTCGGAC--AAATCACT-----CGC----AACA----TGCTCGAGTG---------CCCCC-TGTCTA-----------------AT-TTAT-----------------------------------AT---------A-----------CT-T----ATTTTTT----ATTTTTGATT--CTTTTTCGCAGTTCTGCTGGCCTGCTGCTTGCAGGAATCGGAGGCCACGCGACGCGTGAACSizeHit CountTotal NormTotal
No Reads
droRho1
G---------------TTCCGTTCCGAAGCGAGCGGTTTGGCTCGCTTTATG----GC-------------------TGGG-----------TT-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCGCAGCGGGCCACCTTCGACCAC--ACGCAGC--GTATACGT-TA--------AATATA------------------TGTT----TTGCGCCTCGGAC--AAATCACT-----CCC----AACA----TGCTCGAGTG---------CCCCC-TGTCTA-----------------AA-ATAC-----------------------------------AT---------TTT-----------TT--------------------AAAT-ATTTTTTTTGCAGTTCTGCTGGCTTGCTGCTTGCAGGAATCGGAGGCCACGCGACGCGTGAACSizeHit CountTotal NormTotal
No Reads
droFic1
G---------------CTCCGTTCCG-----AGCGGTTTGGCTCGCTTTATG----GC-------------------TTGG-----------GG-TTGATGG---ATGCTTCAAAGCCAATGCCGCA------------------------------------ATCGCAGCGGGCCACCTTCGACCAC--ACGCGGC--GAGTTCGT-TA--------AATACATAT--------------ATGTT----TTGCGTCTCGGAC--AAATCACT-----CCC----AACA----TGCTCGAGTG---------CCCCC-TGTCTA-----------------AT-AAAT-----------------------------------AT---------ATA---------TTTTTTAT-GTTTTT----TTTTTCGATT--TTTATTCGCAGTTCTGCTGGCCTGCTGCCTGCAGGAATCGGAGGCCACGCGGCGCGTGAACSizeHit CountTotal NormTotal
No Reads
droKik1
G---------------TTCCGTTT--------------TGGCTCGCTTTATG----GC-------------------TCCG-----------GT-TTGATGG---ATGCCTCAAAGCCATA----------------------------------AAGCCACCTTCGAAGGTGG--------------------------------------------------------------------------------TCTTCGGAC--AAATCACA-----GCT----AACTCGAGTGCTCGAGTG---------CCTCT-CGTTTT-----------------ACTCTG------------------------TAATTATT----ATATGTTTTATTTAATTAATTTTA-TC---------TT----CT--TTTTTT--CTGGTTTTTAGTTTTGCTGGCCTGCGTTTTGCAGGAAACGGAGGCCACGCGACGCGTGAACSizeHit CountTotal NormTotal
No Reads
droAna3
G---------------TTCCGTTCCG-----AGCGGTTTGGCTCGCTTTATT----GC-------------------CTC------------GC-TTGATGG---ATGCTTCAAAGCCATTGCCGCACTAGGAATCCAGCTCGAAATCAGAGTTGGAGTCACCATCGCAGCTGGCCATCTTCGACCAC--ACGCGGC--GCGTTCTT-CA--------AATATA------------------TGTT----CTGCGTCTCGGAC--AAATTGTTTTACTACC----AACA----TGGTCGAGTG---------GCCCC-T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................TA------------------TGTT----CTGCGTCTCGGAC--A........................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................AGAGTTGGAGTCACCATCGCAGCC......................................................................................................................................................................................................................................................................................................................................2411.001010000
..................................................................................................................................................................CATCGCAGCTGGCCATCTTCGAC.........................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
G---------------TTCCGTTCCG-----AGCGGTTTGGCTCGCTTTATT----GC-------------------CTC------------GC-TTGATGG---ATGCTTCAAAGCCATTGCCGCACTCGGAATCCAGCTCGGAATCGGAGTTGGAGTCACCATCGCAGCTGGCCACCTTCGACCAC--ACGCGGC--GCGTTCTT-CA--------AATATA------------------TGTT----CTGCGTCTCGGAC--AAATTGTTTTACTACC----AACA----CGGTCGAGTG---------GCCCC-T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
G---------------TTCCGTTCCG-----TGCGGTCC------------------------------------------------------G-TTGATGG---ATGCCTCAAAGCCA----------------------------------------------CACAGCTGGTGGC---TGACCAC--ACACGGCGCGCGTTCTT-CA--------AATAAATAT--------------GTATT----CTGCGACTTAGACTTGAATTGTT------------AACA----TGGTCGAGTG---------GCTCT-TGTACA-----------------A------------------------AGTTTTAAATA--------------------------------T----ATTTTTTAT-------GGATTTGCTTCTTTGCAGTTTTGCTGGCCTGCTGCTTGGAGGAGACGGAGGCCACGCGACGCGTTAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTTGGAGGAGACGG....................2013.0030300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAGGCCACGCGACGC......1913.0030210000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTGGAGGAGACGGAGG.................2112.0020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTTGGAGGAGACGGA...................2012.0020100001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTTGGAGGAGACGGA...................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTTGGAGGAGACGGAGGC................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTGGAGGAGACGGAGGCCACGC...........2711.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTGGAGGAGACGGAGGC................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTGGAGGAGACGGA...................1811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTGGAGGAGACGGAGGC................2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTTGGAGGAGACGG....................1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTGGAGGAGACGG....................1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGAGGAGACGGAGGCC...............2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAGGAGACGGAGGC................1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTGGCCTGCTGCTTGGA............................2311.0010100000000
droPer2
G---------------TTCCGTTCCG-----TGCGGTCC------------------------------------------------------G-TTGATGG---ATGCCTCAAAGCCA----------------------------------------------CACAGCTGGTGGC---TGACCAC--ACACAGCGCGCGTTCTT-CA--------AATAAATAT--------------GTATT----CTGCGACTTAGACTTGAATTGTT------------AACA----TGGTCGAGTG---------GCTCT-TGTACA-----------------A------------------------AGTTTTAAATA--------------------------------T----ATTTTTTAT-------GGATTTGCTTCTTTGCAGTTTTGCTGGCCTGCTGCTTGGAGGAGACGGAGGCCACGCGACGCGTTAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................CGTTCCG-----TGCGGTCC------------------------------------------------------G-TT.................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAGGCCACGCGACGC......1911.001100000
...............................................................................................................................................................................................................................ATAT--------------GTATT----CTGCGACTT...............................................................................................................................................................................................................................................1811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACGGAGGCCACGCGA.........1911.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTTGGAGGAGACGGAGGC................2411.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTTGGAGGAGACGGA...................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTGCTGCTTGGAGGA.........................1811.001010000
droWil2
G---------------TTCCGTTCCG-----TTCCATT-----------CTG----GC----GAATAAACTTTTGGATGGTTTTTTCTCGTCAT-TTGATGG---ATAGTTCAAAGTCAAGATTG--------------------------------------------------------------------------ACGTTCTT-CA--------AATATTATA--------------GTTAT----TTGCAATTTGAAC--AATTTGTT-----AGCAGCTAATTTTATTCTTTGTTTT-GTTTTTTTTTTTTCTTTTTTGTTGAATTTCTTTTCTTAATTTGTGTT--------------------------------TT---------TTT---------CTTG---------CTTTGCTTTATTTACT--CTTCTTGACAGTTCTTATGGCCTGTTTGATGCAGGAAACGGAGGCCACGCGACGCGTTAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGGCCACGCGACGC......2112.00201100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAGGAAACGGAGGCCACG............2612.00201100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAGGCCACGCGACGC......1912.00201100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAGGAAACGGAGGC................2211.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACGGAGGCCACGCGACGC......2211.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGCAGGAAACGGAGGC................2011.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACGGAGGCCACGCGAC........2011.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGCAGGAAACGGAGGC................2111.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATGGCCTGTTTGATGCA............................2011.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAGGAAACGGAGGCC...............2311.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGGAAACGGAGGCCAC.............2011.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGATGCAGGAAACGGAGG.................2111.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGGCCACGCGACGCGTTAAT2711.00101000
............................................................................................AT-TTGATGG---ATAGTTCAAAGTC............................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
droVir3
G---------------TTCCGTTCT------AGCGACTC-----------------GC-------------------TCC------------GT-TTGATGG---A------------------------------------------------------------------------------CCACACACACAGC--GCGTTCAT-CA--------AATATTTATTTGTT----TTTCTGTCTTTTTTTTGCGTATTCGAC--AAG---------------------------------------------------------------------------------------------------GTGTTAAATA-A----AT---------TTT-----------TG---------TT----ATTTTCGAT----TTGCTTACAGTTCTACTGGCATGCTTCATGCAGGAAACGGAGGCCACGCGACGCGTGAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACGGAGGCCACGCGACGC......2112.002001000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTCATGCAGGAAACGGAGGC................2411.001000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGAGGCCACGCGACGCGTGAAT2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCCACGCGACGCGTGA..2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAAACGGAGGCCACGC...........2011.001000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAGGCCACGCGACGCGTGA..2311.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGCAGGAAACGGAGGCCACGC...........2411.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAAACGGAGGCCACGCGACGC......2511.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTCATGCAGGAAAC......................1811.001000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGGCATGCTTCATGCAGGAAAC......................2611.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACGGAGGCCACGCGAC........2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
G---------------TTCCGTTCT------AGCGTCT----------CATCGTTCGC-------------------TCT------------GT-TTGATG-------C------------------------------------------------------------------------GGACCAC--ACACAAT--GCGTTCTT-CA--------AATAATTGT--TT------GTGTTTGTT----TTT-------------------------------------------------G---------CTCTCGCTTTTTGCTTATTTCTCTTTCTCTCTCTGTATTGATAATCATCGACAAGGTGCTAAATATCATAATT---------TGT---------ATTG-------------------TTATTC--TTTATTTACAGTTCTATTGGCATGCTGCTTGCAGGAAACAGAGGCCACGCGACGCGTGAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGCTGCTTGCAGGAAACAGA...................2413.003100002
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCATGCTGCTTGCAGG..........................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAGGCCACGCGACGCGTGA..2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGAAACAGAGGCCACG............2111.001000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCATGCTGCTTGCAGGAAACAGA...................2811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGCTGCTTGCAGGAAACAGAGGC................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCATGCTGCTTGCAGGAAACAGAG..................2811.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCTTGCAGGAAACAGAGGC................2411.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAACAGAGGCCACGCGACGC......2411.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGAGGCCACGCGACGCGTGAAT2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCATGCTGCTTGCAGGAAACAGA...................2711.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATGCTGCTTGCAGGA.........................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGGCATGCTGCTTGCAGGA.........................2311.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCATGCTGCTTGCAGGAAACA.....................2511.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGCTTGCAGGAAACAGA...................2111.001000001
droGri2
TTGTTTTTGGCCCGAGTTCCGTTCT------TGC---------CACGTTCC-----GCTCTG----------------TTT-----------GT-TTAATG---------------------------------------------------------------------------------GGCCAC--ACACAGC--GCGATCTT-CA--------CATATTTTA---TT----GTTATTTTTA-----------------------------------------TT----TTCTTTAGTT---------TTTTC--TCACA-----------------A------------------------GGTGTTAAATA-AAT--A----------------------ATTG-----GCTTCT----ATTTTTGGC------TCTTACAGTTCTTTTGGCATGCTGCTTGCAGGAAACAGAAGCAACGCGGCGTGTAAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 07:08 PM