dsi_20234

Name	Class	Family	Strand
DNAREP1_DM	RC	Helitron	+

TCGATAGTAAAAATCAGCATAACCAAAATGAAATTTTAGAAGGAGAAAGAGTAAGTATTTAAAATATAGCAATTTAATTTTTATGTTATTAAATAAGTATTGTTGTTAAAGTCCCACATACCATTCTTTATAAATTAGATTTTCCCAATTTATGTTTTAAATTTATATTAGAAATGTTACAAGAAATATCAGTTGTTTCCGACTATAAAAAAAAAACCTTTTCATGAGAAATATTACTAGCTGAGTCGAT ************************************************((((.(((((..((((((..(((((((....((((.........((((...(((..(((((..............)))))..)))...))))........))))..)))))))))))))..)))))))))..((((((.....)))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
................................................................................................................................................................................................TTCTTCCCGTCTATAAAAAAAAAA..................................	24	3	1	1.00	1	1	0	0	0	0	0
............................TTAACTTTAAGAAGGAGAAA..........................................................................................................................................................................................................	20	3	20	0.65	13	13	0	0	0	0	0
.....................................................................................................................................................................................................................AAACCTTTTCATGAGA.....................	16	0	2	0.50	1	0	1	0	0	0	0
............................TGAACTTTAAGAAGGAGAA...........................................................................................................................................................................................................	19	2	4	0.25	1	1	0	0	0	0	0
.................................TTTAAGAAGGAGATAGA........................................................................................................................................................................................................	17	2	20	0.15	3	3	0	0	0	0	0
....................................................................................................................................................................................................TTCCGAGTCTAAAAAAAAAA..................................	20	2	7	0.14	1	0	0	0	1	0	0
............................................................................ATTTATATGTGATTAAATAAC.........................................................................................................................................................	21	3	20	0.10	2	0	0	2	0	0	0
............................TGAACTTTAAGAAGGAGA............................................................................................................................................................................................................	18	2	11	0.09	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................AATATTACTAGATGA......	15	1	15	0.07	1	0	0	0	0	0	1
..............................AACTTTAAGAAGGAGAAA..........................................................................................................................................................................................................	18	2	15	0.07	1	1	0	0	0	0	0
....................................................................................................................................................................................................ATCCGACGATCAAAAAAAAAC.................................	21	3	16	0.06	1	0	0	1	0	0	0
................................................................................................................................................................................................TAGTTTCGGCCTATAAAAAAA.....................................	21	3	17	0.06	1	0	0	0	0	1	0
.................................TTTAAGAAGGAGAAA..........................................................................................................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................AGTTTCGGCCTATAAAAAAA.....................................	20	3	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................TTTTCTTGAGAAATA.................	15	1	20	0.05	1	1	0	0	0	0	0

AGCTATCATTTTTAGTCGTATTGGTTTTACTTTAAAATCTTCCTCTTTCTCATTCATAAATTTTATATCGTTAAATTAAAAATACAATAATTTATTCATAACAACAATTTCAGGGTGTATGGTAAGAAATATTTAATCTAAAAGGGTTAAATACAAAATTTAAATATAATCTTTACAATGTTCTTTATAGTCAACAAAGGCTGATATTTTTTTTTTGGAAAAGTACTCTTTATAATGATCGACTCAGCTA ************************************************((((.(((((..((((((..(((((((....((((.........((((...(((..(((((..............)))))..)))...))))........))))..)))))))))))))..)))))))))..((((((.....)))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	M023 head	SRR553486 Makindu_3 day-old ovaries
..............................................................................................................CAGGGTGTATGGTAAGAAATA.......................................................................................................................	21	0	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................TTAGCAAAGGCTGATATTTTTTCTT...................................	25	3	4	0.25	1	0	1	0	0
.....................................................TCATAGATTTTATAGTGTTAAA...............................................................................................................................................................................	22	3	9	0.11	1	0	0	1	0
..................................................................................................................................................................................................................TTTTTTTGACCAGTACTCTTT...................	21	3	11	0.09	1	0	0	0	1
.............AGTCGTATTGGTTTG..............................................................................................................................................................................................................................	15	1	13	0.08	1	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	4:959588-959837 +	dsi_20234	TCGAT---------------------------------------------AGTAAAAATCAGC-ATA---ACCAAAATGAAATTTTAGAA------------GGAGAA---------A-GAGTAAGTATTTAAAATATAGCAATTT-------------------------------------------AATTTTTATGTTAT---------------TAAAT-----------AAGTATTGTTGT----------------TAAAGTCCCACATA---CCATTCTTTATAAAT-------TAGATTTTC------------------------------C----CAATTTATG---------TTTTAAATTTATATTAGA-------------------AATGTTACAAGAAATATCAGTTGTTTCCGACTATAAAAAAAAAA--C----CTTTTCATGAGAAATA---------------TTACTAGCTGAGTCGAT
droSec2	scaffold_40:223078-223329 +		TCGAT---------------------------------------------AGTAAAAATCAGC-ATA---ACCAAAATGAAATTTTAGAA------------GGAGAA---------A-GAGTAAGTATTTAAAATATGGCAATTT-------------------------------------------AATTTTTATGTTAT---------------TAAAT-----------AAGTATTGTTGT----------------TAAAGTCCCACATA---CCATTCTTTATAAAT-------TAGATTTTC------------------------------C----CAATTTATG---------TTTTAAACTTATATTAGA-------------------AATGTTACAAGAAATATGAGTTGTTTCCGACTATAAAAAAAAAAAAC----CTTTTCATGAGAAATA---------------TTACTAGCTGAGTCGAT
dm3	chr4:1187426-1187662 +		TCCAT---------------------------------------------AGTGAAAATCAGC-ACAACAACCAAAATGAAATTGTAGTT------------GGAGAA---------A-AAGTAAGTATTTCAAATATAGCATTTT-------------------------------------------TATTTTTAAGTTAT---------------TAAAT-----------AAATT------------------------------------------ATTCTTGATAAAT-TGAATGTAGATTTTC------------------------------C----CAATTTATA---------TTTTAAACTTATATTAGATACGTTAAA-------A-----------AGAAAGATCAGTTGTTTCCGACTATATAAATAATA--C----CTTCTCTTGAGAAGAA---------------TTAATAGCCGAGTCGAT
droEre2	scaffold_4820:47328-47563 +		AACT-------------------------------------------------------CAAC-CTA---TCTTAATCGAAATTTGAAGTG--------GC-ATATCT---------G-GAGCAATTCTATAAAAA---------TCTGCATT-AAAATTTAGA---------CAATTT----------TTTTATTTTTTTTT---------------TTTTT---------------------------------------------------------------------------------------------------TAATTATACCTGTTACTCGTAGA------GT-AAAATGCTATA-----------CTATATTCGTTAAA-------AAATATGTAACAGGCAGAAGGAAACGTTTGCGACCATATAAAGTATA--TACAAATATTCTTGATCAGGA---------------TCAATAGCCGAGTCGAT
droYak3	v2_chr2h_random_001:35476-35712 +		TCGTT---------------------------------------------GGTAAAAATACTG-ATG---CCTAAACTATAAT---G--------------------A-----------------------------------------------AAATTAAAAG--TATAAATATTTATT--------C----------TGT---------------A-------------------------------------------CAAGA-----TAAA---ACTTTATGTTACTAAT---AC-T----TAAGCTGGT---TACCTTTTTATACCCGTTACTCGTAGA------GT-AAAAGGGTATA-----------CTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATA--T----ATATTCTTGATCAGGA---------------TCAATAGCCGAGTCGAT
droEug1	scf7180000409008:1355019-1355254 +		AAAGT---------------------------------------------T---------TAC-AAA---ATAAAAATAAAATTTTAGAATAGAACGTAGAATGGCAA---------A-GA-------TTACA---GTAGCGACTA------A-GTC--------------TATAATACCC--CCA------TATGT---------ACA------GTTT----------------------------------TCT------TAAAGTTTAATA----------------------------------AGTTTATCACCT-ATTTTTATACCCCC-----G-------------------------------------------------------TATGTATGTAACAGGTATTATAAATCGTTTCCGACTATGAAAAGAATG--T----ATATTCTTGATCAGTATCAGTAGCAGTAGCATCAGTAGCAGAGTTGAC
droBia1	scf7180000302432:281016-281253 -		AATA--------------------------------------------------------ATC-ACA---AACATACCAAAAGTTAATAT------------GTATGC---------A-GGATAATTATTTGGAACCTAT----------ATCCAATACTTAATTGGTTTTAAAATTT-----------GTTTTCTGTTTTAT---------------TAAAA-----------AGATGCTTGTTC----------------TGAAA------------------CTTATAGTT-------TTT---------------------------CCATAGCCAGTT-------GAAT---------TATTGAAATTATACTTTG---------------CATGTATGT------------AAAGCGTTTCCGATCCCATAGAGTACA--T----ATATTCTTGATAAAGA---------------TCACTAGCCGAGTCGAT
droTak1	scf7180000415236:213069-213293 -		TCGAT---------------------------------------------ATTATA----------------------------------------------------TAATCAATATTGTCAAAATA-----------------TCGAAAAA-ATC--------------GATAATTTTC--CGA------ATTAT---------TTA--------------TATTTTAAAA------------T-----------------------------------------------------ATTGAAATCAGTAGGT---TTGTTTGTTATACCCGTTACTCGTAGA------GT-AAAAGGGTATA-----------TTAGATTCGTGCAA-------AAGTATGTAACAGGTAAAAGGAAGGGTTTCCGACCCTATAAACTATA--T----ATATTCTTGATCAGGG---------------TCACTAGCCGAGTCGAT
droEle1	scf7180000491014:1521-1766 -		TGGAAAA--------TAACGTAAT-------------------------------------------------AAAATGAAGTTATTTTC------------------TAGTCAATAT-GTTTAATTGTTTAAAATATAACATTTT-GGA-----AAATTTAAAA--------------------------T---TTTTTAATTATTTA--------------T-------AAT-------TTGTT-----------------------------------------------------GTTGGTTTTTATTTA---TTT-GTTTTTATACCCTT-----GCAG-------------AGGGTATT-----------ATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA--T----ATATTCTTGATCAGCA---------------TCACTAGTAGAGTCGAT
droRho1	scf7180000777823:2368-2604 -		ATTGT---------------------------------------------A---AATAATAACTATA---TCTTAAAGGAATATTTTGATA-A---------ATAGAA-----------------------------------------------AAAC----------------------AGCAAAATAAAAATTTTGTTTC------ATATTTATTT----------------------------------TTTTAATTTTTTGATTTTA---------------------------------------------ATC-ATTTTTATACCCGTTACTCGTAGA------GT-AAAAGGGTATA-----------TTGTATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATA--T----ATATTCTTGTTCAGGA---------------TCACTAGCCGAGTCGAA
droFic1	scf7180000453435:4208-4304 +		TATAT---------------------------------------------ATTAACCGTAATG-TGA---CCCAAAAAACTAA----GCC-------------------------------------A-----------------TCTGAAGA-AAAAGTAAGT---------TTAGGT----------T------T---------TTA--------------TATTTTAG-------------------------------------------------------------------------------GGGTT---CACTTATTAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------GATT--A
droKik1	scf7180000302388:1626616-1626848 +		CATA------------------------------------------------------------------GCCTAAAAAAAATTTTCAATG-----------GGAAAA----------------AATGTTAAAGTTATATCAAAAC-------------------------------------------CATTTAAA-AATATTTC---ATATACGTTT----------------------------------TTT------CAAGATTCCCTATA---ACATTATTTTACAAC-------TAA-----------------ATTTTTATACCCTT-----GC---------------AGGGTATT-----------ATAATTTCAGTCAG-------AAGTTTGCAACGCGGTGAAGGAGACGTTTTCGACCCTATAAAGTATA--T----ATATTCTTGATCAGCA---------------TCAACAGCCGAGTCGAT
dp5	Unknown_group_48:230-519 +		TCGATTAGACCTAAAAAACATAATCAAAGGTTGGCCAAAATAATAAGTAC---------------------------AGCAATTCTACAA------------AGCGAA-----------------------------------------------AAACTAAAAGCGTATCAACATTTTTC--------CACTTTTTTCTTATTATTTA--------------T-------AAT-------CTTATACAAGTAT----------------CCTATATAGCCACA-------------------------------------CTTTTTATACCCGATACTCA----AAATGAGTA---------TTATTATTATATATTAGATTTGTGCTAAAGATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA--T----ATATTCTTGATCAGCA---------------TCAATAGCCGAGTCGAT
droPer2	scaffold_89:67732-68021 +		TCGATAAGACCTAAAAAACATAAACAAAGGTTGGCCAAAATAATAAGTAC---------------------------AGCAATTCTACAA------------AGCGAA-----------------------------------------------AAACTAAAAGCGTATCAACATTTTTC--------CACTTTTTTCTTATTATTTA--------------T-------AAT-------CTTATACAAGTAT----------------CCTATATAGCCAAA-------------------------------------CTTTTTATACCCGATACTCA----AAATGATTA---------TTATTATTATATATTAGATTTGTGCTAAAGATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA--T----ATATTCTTGATCAGCA---------------TCAATAGCCGAGTCGAT
droWil2	scf2_1100000004949:383634-383737 +		AACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATA-----------TTAAAGTCGCA-AA-------AAATATGCATCAGGCAGAAGGAAGCATCTCCGACCTTACAAAGTATA--T----ATATTCTTGATCAGCA---------------TCAACAGCCGGGTCGAT
droVir3	scaffold_12726:136113-136319 +		AATAT------------------------------------------------------------------------------------------------------------------------GTATCTTAATTTTAGAAATGT-------------------------------------------ATCTTTTTTTCTTT---------------TGTTCA-------AATA--TTATTGCAC----------------TAT--------------------------------------------------------AGTTTTATACCCTGAACCCATTAAAAATGGGT-ATAAGTGTATC-----------TTGTATTTGTTCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACTCCAAAAAGTATA--T----ATATTCTTGATCAGTA---------------TCACTAACCGAGTCGAT
droMoj3	scaffold_6482:1969591-1969827 -		AATGA---------------------------------------------AT--------------------AATAATAATAG--------------------------------------------------------------------------------------TTAGCATATTTCAGCAAATTATTTTTTATTTTTT---------------AAAAT-----------AATT--------------TTCCTATTGCTACGATCGCGATCA---AGAATCACAAC-----------TGG-----------------TTTTTTATACCCTAAACCCATTGAAAATGGGA----------A-ATCAGAGTATAATGGTTTTGTG-AA-------AAGTATGTAACAGGCAGAAGGAGTCATCGCAGGCCCCATAAAGGATA--T----ATATTCTTGATCAGCA---------------CGACGAGCTGAGTCGAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCGAT---------------------------------------------AGTAAAAATCAGC-ATA---ACCAAAATGAAATTTTAGAA------------GGAGAA---------A-GAGTAAGTATTTAAAATATAGCAATTT-------------------------------------------AATTTTTATGTTAT---------------TAAAT-----------AAGTATTGTTGT----------------TAAAGTCCCACATA---CCATTCTTTATAAAT-------TAGATTTTC------------------------------C----CAATTTATG---------TTTTAAATTTATATTAGA-------------------AATGTTACAAGAAATATCAGTTGTTTCCGACTATAAAAAAAAAA--C----CTTTTCATGAGAAATA---------------TTACTAGCTGAGTCGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--C----CTTTTCATGAGA....................................	16	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

TCGAT---------------------------------------------AGTAAAAATCAGC-ATA---ACCAAAATGAAATTTTAGAA------------GGAGAA---------A-GAGTAAGTATTTAAAATATGGCAATTT-------------------------------------------AATTTTTATGTTAT---------------TAAAT-----------AAGTATTGTTGT----------------TAAAGTCCCACATA---CCATTCTTTATAAAT-------TAGATTTTC------------------------------C----CAATTTATG---------TTTTAAACTTATATTAGA-------------------AATGTTACAAGAAATATGAGTTGTTTCCGACTATAAAAAAAAAAAAC----CTTTTCATGAGAAATA---------------TTACTAGCTGAGTCGAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TCCAT---------------------------------------------AGTGAAAATCAGC-ACAACAACCAAAATGAAATTGTAGTT------------GGAGAA---------A-AAGTAAGTATTTCAAATATAGCATTTT-------------------------------------------TATTTTTAAGTTAT---------------TAAAT-----------AAATT------------------------------------------ATTCTTGATAAAT-TGAATGTAGATTTTC------------------------------C----CAATTTATA---------TTTTAAACTTATATTAGATACGTTAAA-------A-----------AGAAAGATCAGTTGTTTCCGACTATATAAATAATA--C----CTTCTCTTGAGAAGAA---------------TTAATAGCCGAGTCGAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................TTAGATACGTTAAA-------A-----------AGAAAGATCAGT..............................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACTATATAAATAATA--C----CTTCTC..........................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTCCGACTATATAAATAATA--C----C...............................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGAA---------------TTAATAGCCGGAG....	21	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA---------------TTAATAGCCGAGTCGAT	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------TTAATAGCCGAGTCGAT	18	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AACT-------------------------------------------------------CAAC-CTA---TCTTAATCGAAATTTGAAGTG--------GC-ATATCT---------G-GAGCAATTCTATAAAAA---------TCTGCATT-AAAATTTAGA---------CAATTT----------TTTTATTTTTTTTT---------------TTTTT---------------------------------------------------------------------------------------------------TAATTATACCTGTTACTCGTAGA------GT-AAAATGCTATA-----------CTATATTCGTTAAA-------AAATATGTAACAGGCAGAAGGAAACGTTTGCGACCATATAAAGTATA--TACAAATATTCTTGATCAGGA---------------TCAATAGCCGAGTCGAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGA---------------TCAATAGCCGAGTCGAT	27	20	0.15	3	0	0	0	0	0	0	3
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAACGT...........................................................................	19	20	0.05	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGA---------------TCAATAGCCGA......	25	20	0.05	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAACGTT..........................................................................	25	20	0.05	1	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAACGTTT.........................................................................	21	20	0.05	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGA---------------TCAATAGCCGAGTC...	21	20	0.05	1	0	0	0	0	0	1	0

droYak3

TCGTT---------------------------------------------GGTAAAAATACTG-ATG---CCTAAACTATAAT---G--------------------A-----------------------------------------------AAATTAAAAG--TATAAATATTTATT--------C----------TGT---------------A-------------------------------------------CAAGA-----TAAA---ACTTTATGTTACTAAT---AC-T----TAAGCTGGT---TACCTTTTTATACCCGTTACTCGTAGA------GT-AAAAGGGTATA-----------CTAGATTCGTTGAA-------AAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATA--T----ATATTCTTGATCAGGA---------------TCAATAGCCGAGTCGAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGA---------------TCAATAGCCG.......	15	20	1.55	31	0	0	0	0	0	0	0	0	0	0	31
...............................................................................................................................................................................................................................................................................................................................................TACTCGTAGA------GT-AAAAGGGTATA-----------CTAGA......................................................................................................................	28	20	0.40	8	0	0	8	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGAC....................................................................	22	20	0.25	5	0	0	0	0	0	0	5	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGA---------------TCAATAGCCGAG.....	24	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCGTT..........................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.....................................................................................................................................................................................................................................................................................................................................................TAGA------GT-AAAAGGGTATA-----------CTAGATT....................................................................................................................	24	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCGTTTCCGACCAT.................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTTTATACCCGTTACTCGTAGA------G...................................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCGTT..........................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CGTTGAA-------AAGTATGTAACAG.........................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TACTCGTAGA------GT-AAAAGGGTATA-----------CTAG.......................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AGGGTATA-----------CTAGATTCGTTGA..............................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--T----ATATTCTTGATCAGGA---------------TCAATAG..........	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAAGGAAGC.............................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................GAA-------AAGTATGTAACAGGCAGAAGGAAG..............................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AAAGT---------------------------------------------T---------TAC-AAA---ATAAAAATAAAATTTTAGAATAGAACGTAGAATGGCAA---------A-GA-------TTACA---GTAGCGACTA------A-GTC--------------TATAATACCC--CCA------TATGT---------ACA------GTTT----------------------------------TCT------TAAAGTTTAATA----------------------------------AGTTTATCACCT-ATTTTTATACCCCC-----G-------------------------------------------------------TATGTATGTAACAGGTATTATAAATCGTTTCCGACTATGAAAAGAATG--T----ATATTCTTGATCAGTATCAGTAGCAGTAGCATCAGTAGCAGAGTTGAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AATA--------------------------------------------------------ATC-ACA---AACATACCAAAAGTTAATAT------------GTATGC---------A-GGATAATTATTTGGAACCTAT----------ATCCAATACTTAATTGGTTTTAAAATTT-----------GTTTTCTGTTTTAT---------------TAAAA-----------AGATGCTTGTTC----------------TGAAA------------------CTTATAGTT-------TTT---------------------------CCATAGCCAGTT-------GAAT---------TATTGAAATTATACTTTG---------------CATGTATGT------------AAAGCGTTTCCGATCCCATAGAGTACA--T----ATATTCTTGATAAAGA---------------TCACTAGCCGAGTCGAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCGAT---------------------------------------------ATTATA----------------------------------------------------TAATCAATATTGTCAAAATA-----------------TCGAAAAA-ATC--------------GATAATTTTC--CGA------ATTAT---------TTA--------------TATTTTAAAA------------T-----------------------------------------------------ATTGAAATCAGTAGGT---TTGTTTGTTATACCCGTTACTCGTAGA------GT-AAAAGGGTATA-----------TTAGATTCGTGCAA-------AAGTATGTAACAGGTAAAAGGAAGGGTTTCCGACCCTATAAACTATA--T----ATATTCTTGATCAGGG---------------TCACTAGCCGAGTCGAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGAAAA--------TAACGTAAT-------------------------------------------------AAAATGAAGTTATTTTC------------------TAGTCAATAT-GTTTAATTGTTTAAAATATAACATTTT-GGA-----AAATTTAAAA--------------------------T---TTTTTAATTATTTA--------------T-------AAT-------TTGTT-----------------------------------------------------GTTGGTTTTTATTTA---TTT-GTTTTTATACCCTT-----GCAG-------------AGGGTATT-----------ATAATTTCAGTCAG-------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATA--T----ATATTCTTGATCAGCA---------------TCACTAGTAGAGTCGAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTGT---------------------------------------------A---AATAATAACTATA---TCTTAAAGGAATATTTTGATA-A---------ATAGAA-----------------------------------------------AAAC----------------------AGCAAAATAAAAATTTTGTTTC------ATATTTATTT----------------------------------TTTTAATTTTTTGATTTTA---------------------------------------------ATC-ATTTTTATACCCGTTACTCGTAGA------GT-AAAAGGGTATA-----------TTGTATTCGTGCAA-------AAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATA--T----ATATTCTTGTTCAGGA---------------TCACTAGCCGAGTCGAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATAT---------------------------------------------ATTAACCGTAATG-TGA---CCCAAAAAACTAA----GCC-------------------------------------A-----------------TCTGAAGA-AAAAGTAAGT---------TTAGGT----------T------T---------TTA--------------TATTTTAG-------------------------------------------------------------------------------GGGTT---CACTTATTAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------GATT--A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CATA------------------------------------------------------------------GCCTAAAAAAAATTTTCAATG-----------GGAAAA----------------AATGTTAAAGTTATATCAAAAC-------------------------------------------CATTTAAA-AATATTTC---ATATACGTTT----------------------------------TTT------CAAGATTCCCTATA---ACATTATTTTACAAC-------TAA-----------------ATTTTTATACCCTT-----GC---------------AGGGTATT-----------ATAATTTCAGTCAG-------AAGTTTGCAACGCGGTGAAGGAGACGTTTTCGACCCTATAAAGTATA--T----ATATTCTTGATCAGCA---------------TCAACAGCCGAGTCGAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TCGATTAGACCTAAAAAACATAATCAAAGGTTGGCCAAAATAATAAGTAC---------------------------AGCAATTCTACAA------------AGCGAA-----------------------------------------------AAACTAAAAGCGTATCAACATTTTTC--------CACTTTTTTCTTATTATTTA--------------T-------AAT-------CTTATACAAGTAT----------------CCTATATAGCCACA-------------------------------------CTTTTTATACCCGATACTCA----AAATGAGTA---------TTATTATTATATATTAGATTTGTGCTAAAGATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA--T----ATATTCTTGATCAGCA---------------TCAATAGCCGAGTCGAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATA..............................................................	24	20	5.65	113	0	113	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCCAGAAGGA................................................................................	20	20	0.80	16	0	16	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCC.................................................................	25	20	0.70	14	0	14	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGAATCG............................................................................	26	20	0.50	10	0	10	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGTTTCCGACCCCATAAAGTA.........................................................	25	20	0.40	8	0	5	0	0	0	0	0	0	3	0
........................................................................................................................................................................................................................................................................................................................................................................................................GATGGATGTGTGTAACGTCC.......................................................................................	20	3	0.33	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGCA---------------TCAATA...........	21	20	0.30	6	0	6	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCC..................................................................	19	20	0.30	6	0	6	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCA---------------TCAATAGCCG.......	21	20	0.25	5	0	0	0	0	0	0	5	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCCA................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTTTCCGACCCCATAA.............................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGTCCAGAAGGAATC.............................................................................	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCC..................................................................	22	20	0.20	4	0	0	4	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGAAT..............................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCC.................................................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0
........................................TAATAAGTAC---------------------------AGCAATTCTACAA------------AG...........................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TTATACCCGATACTCA----AAATGA....................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	3	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------------TCAATAGCCGAGTCGA.	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATATTCTTGATCAGCA---------------TCAAT............	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACGTCCAGAAGGAATC.............................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................TTATACCCGATACTCA----AAAT......................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATATTCTTGATCAGCA---------------TCAATAGCCG.......	27	20	0.10	2	0	0	0	0	0	0	0	2	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCCATA..............................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGTTTCCGAC....................................................................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCA---------------TCAATAGCCGAG.....	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCA---------------TCAATAGCCGAGT....	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTTTATACCCGATACTCA----AAATGAG...................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGTGTAACGTCCAG.....................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACGTCCAGAAGGAAT..............................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TTTTATACCCGATACTCA----AAATG.....................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

TCGATAAGACCTAAAAAACATAAACAAAGGTTGGCCAAAATAATAAGTAC---------------------------AGCAATTCTACAA------------AGCGAA-----------------------------------------------AAACTAAAAGCGTATCAACATTTTTC--------CACTTTTTTCTTATTATTTA--------------T-------AAT-------CTTATACAAGTAT----------------CCTATATAGCCAAA-------------------------------------CTTTTTATACCCGATACTCA----AAATGATTA---------TTATTATTATATATTAGATTTGTGCTAAAGATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATA--T----ATATTCTTGATCAGCA---------------TCAATAGCCGAGTCGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCCAGAAGG.................................................................................	19	20	2.85	57	0	0	0	0	0	57
.............................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCTAAAGATGGATGTG.................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................TGTGCTAAAGATGGATGTGTGT..............................................................................................	22	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCA---------------TCAATAGCCG.......	21	20	0.90	18	0	18	0	0	0	0
..........................................ATAAGTAC---------------------------AGCAATTCTACAA------------AGCG.........................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.29	2	0	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCCA................................................................	21	20	0.20	4	0	4	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCA---------------TCAATAGCCGAGTCGAT	25	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGTCCAGAAGGAATCGT...........................................................................	25	20	0.05	1	0	0	1	0	0	0

droWil2

AACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATA-----------TTAAAGTCGCA-AA-------AAATATGCATCAGGCAGAAGGAAGCATCTCCGACCTTACAAAGTATA--T----ATATTCTTGATCAGCA---------------TCAACAGCCGGGTCGAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGAC....................................................................	21	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--T----ATATTCTTGATCAGCA---------------TCAACAG..........	26	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATATTCTTGATCAGCA---------------TCAACAGCCG.......	27	20	0.05	1	0	0	0	1	0

droVir3

AATAT------------------------------------------------------------------------------------------------------------------------GTATCTTAATTTTAGAAATGT-------------------------------------------ATCTTTTTTTCTTT---------------TGTTCA-------AATA--TTATTGCAC----------------TAT--------------------------------------------------------AGTTTTATACCCTGAACCCATTAAAAATGGGT-ATAAGTGTATC-----------TTGTATTTGTTCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACTCCAAAAAGTATA--T----ATATTCTTGATCAGTA---------------TCACTAACCGAGTCGAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGG.................................................................................	26	20	20.20	404	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	404	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGGA................................................................................	27	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC.......................................................................................	20	20	0.65	13	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAG..............................................................................	22	20	0.60	12	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAA...................................................................................	24	20	0.45	9	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGG.................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGA....................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAG..............................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCATC..........................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCA............................................................................	24	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTCCG......................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGG........................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATCTCCGAC....................................................................	30	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATCCAAATGTATGTAACAGGCA......................................................................................	27	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CCAAATGTATGTAACAGGCAGAAGG.................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGGAAG..............................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCAT...........................................................................	19	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAGCATC..........................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAATGTATGTAACAGGCAGAAGG.................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCA......................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................AAATGTATGTAACAGGCAGAAGG.................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAAGCATCTCCG......................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAG..............................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCATCTCCGACTC..................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCATCTCCGACT...................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AATGA---------------------------------------------AT--------------------AATAATAATAG--------------------------------------------------------------------------------------TTAGCATATTTCAGCAAATTATTTTTTATTTTTT---------------AAAAT-----------AATT--------------TTCCTATTGCTACGATCGCGATCA---AGAATCACAAC-----------TGG-----------------TTTTTTATACCCTAAACCCATTGAAAATGGGA----------A-ATCAGAGTATAATGGTTTTGTG-AA-------AAGTATGTAACAGGCAGAAGGAGTCATCGCAGGCCCCATAAAGGATA--T----ATATTCTTGATCAGCA---------------CGACGAGCTGAGTCGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCA---------------CGACGAGCTGA......	21	20	0.15	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TGGGA----------A-ATCAGAGTATAATGGTT.....................................................................................................................	23	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCA---------------CGACGAGC.........	21	20	0.15	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATA--T----ATATTCTTGATC....................................	18	9	0.11	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................TGGGA----------A-ATCAGAGTATAATGGT......................................................................................................................	22	20	0.10	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................................................................................................................A-------AAGTATGTAACAGGCAGAAGGAGT..............................................................................	25	11	0.09	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAGT..............................................................................	22	17	0.06	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ATTGAAAATGGGA----------A-ATCAGAGTAT............................................................................................................................	24	18	0.06	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................TTGAAAATGGGA----------A-ATCAGAGTA.............................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCA---------------CGACGAGCTGAGTCGA.	22	20	0.05	1	1	0	0	0	0	0

dsi_20234

4:959638-959787 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads