ID:

dsi_20222

 Coordinate:

3l:11385609-11385758 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_11385545_11385608_+]; exon [3l_11384941_11385608_+]; intron [3l_11385609_11387102_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTCTTCAATGCCGGCAAGTATCCCCTCTCCCTCCCCTTGCAAACCCATTAAGTTAAGCACCGCGCATCGCTTACATCAGCCGATAATGTTTTCCCGTTTCCAGAGCCACGCACGTGCTGCAGGTTATATGTATGTGTGTGTGTGCGTGTATGTTCATCCATATGTACATAAATTTAACTGTTAATTGCGAACTTTTGATCTGTAGCTTCGATT
**************************************************(((((.................)))))...............((((.(((((((.((((.....(((.((........))..)))....))))(((((((((((............))))))))))).)))))))..)))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.................................................................................................................................................................................................................................GAACTTTTGATCTGTAGCTTC.... 21 0 1 1.00 1 0 1 0 0 0
..............................CTACTTTCTCTTCAATGCCGG....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
.....AGGAGCTGCTGCCCATGAAGG................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
...........................................AAGTCCGGCAAGTGTCCCCTCT......................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0
...........................................................................GCCAATCCATTAAGTTAAG............................................................................................................................................................ 19 2 9 0.11 1 1 0 0 0 0
....................................................................................................................................................................................................................AAGTGTTAATTACGAACT.................... 18 2 11 0.09 1 1 0 0 0 0
...........................................................................GCTAACGCATTAAGTTA.............................................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 1
............CCTGCCCATGAAGTCGTACT.......................................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 1 0
....AAGGAGATGGCGCCCATGAA.................................................................................................................................................................................................................................. 20 3 16 0.06 1 1 0 0 0 0

Anti-sense strand reads

GCTATTCCTCGACGACGGGTACTTCCGCGTGATGAAAGAGAAGTTACGGCCGTTCATAGGGGAGAGGGAGGGGAACGTTTGGGTAATTCAATTCGTGGCGCGTAGCGAATGTAGTCGGCTATTACAAAAGGGCAAAGGTCTCGGTGCGTGCACGACGTCCAATATACATACACACACACACGCACATACAAGTAGGTATACATGTATTTAAATTGACAATTAACGCTTGAAAACTAGACATCGAAGCTAA
**************************************************(((((.................)))))...............((((.(((((((.((((.....(((.((........))..)))....))))(((((((((((............))))))))))).)))))))..)))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 GSM343915
embryo
..................................................................................................................................................................................CACGCACATACAAGTAGGTA.................................................... 20 0 1 2.00 2 0 2 0 0 0 0
.............................TGATGAAAGAGAAGTTA............................................................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0
..........................................................GGGGAGAGGGAGGGGAA............................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0
.........................................................AGGGGAGAGGGAGGGGAA............................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
.......................TCCGCGTGATGAAAGAGAAGT.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
.............................................................GAGAGGGAGGGGAACGT............................................................................................................................................................................ 17 0 1 1.00 1 1 0 0 0 0 0
.................................................................................GGTAATTCAATTCGTGGCGC..................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
.................GGTACTTCCGCGAGATG........................................................................................................................................................................................................................ 17 1 2 0.50 1 0 0 0 1 0 0
...............................................GGCTGTTCATAGGCGAGATG....................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0
..............................................................AGAGGGGGGGGAACG............................................................................................................................................................................. 15 1 7 0.29 2 2 0 0 0 0 0
........................................................TGGGGGAGAGGGAGGGGA................................................................................................................................................................................ 18 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................GAAAGCTCTCGGTGCGTCCA.................................................................................................. 20 3 4 0.25 1 1 0 0 0 0 0
.........................................................AGGGGAGAGGGAGGGGGTCGGT........................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 1
..............................................................................................................................................................................................AGTTGGTATACATGT............................................. 15 1 15 0.13 2 0 0 2 0 0 0
.................................................................................................................................................................................................AAGTATACATGTATTTCAA...................................... 19 2 16 0.06 1 1 0 0 0 0 0
..........................................................................................................................................TCTGGGGGCGTGCACG................................................................................................ 16 2 17 0.06 1 0 0 1 0 0 0
..............................................................................................................................AAAGCGCAAAGGTCT............................................................................................................. 15 1 17 0.06 1 1 0 0 0 0 0

Generated: 04/24/2015 at 03:25 AM