dsi_20182

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

CGGCGATTTACCAACAGAGGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGGTGCACCACCACAACCACCCACCAACGACGAGCCAACTGAATCGAGCCACAGCACCGGCGCCACTGCAGCTCGGAGGTCCTGTCAATCCCAGTTTCGTGGATGCCCAGACATCCACATCGCCGCTGATGGCACAGCAGCTTCATTCGCAGCATGTGGATGTGGATGCAGCGCCACCCTCGTCGTCATCATCATCGGCGGT ************************************************(((......))).............(((.((((...(((......((((((((...((((.......((((.(((...........))).))))..(((((((......)))))))..)))))))).)))).)))..))))...)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M023 head
...........CAACAGAGGCAGCAGCAGCAGC.........................................................................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................AACTTCATTCGCAGAATGCGGA..........................................	22	3	3	0.33	1	0	0	1	0	0
.................................................................................................................................................................................................................GTGGATGCAGCGCCAT.........................	16	1	4	0.25	1	0	1	0	0	0
....................................................................................................................................................................................CACAGCAGCGTCATTCACA...................................................	19	2	5	0.20	1	0	0	1	0	0
.......................................................................................................................................................................................................GCATGTGGGTGTGGATGC.................................	18	1	6	0.17	1	0	1	0	0	0
..........................................................................................................................................................................................................................GCGCCACCCTCGTCGG................	16	1	8	0.13	1	0	1	0	0	0
.....................................................................................TCTGAATCGAGCCCCAGTA..................................................................................................................................................	19	3	12	0.08	1	0	0	0	1	0
........................AGCAGCAGCAACAGCAGCAGCAGC..........................................................................................................................................................................................................	24	0	20	0.05	1	0	0	0	0	1

GCCGCTAAATGGTTGTCTCCGTCGTCGTCGTCGTTGTCGTCGTCGTCGTCCACGTGGTGGTGTTGGTGGGTGGTTGCTGCTCGGTTGACTTAGCTCGGTGTCGTGGCCGCGGTGACGTCGAGCCTCCAGGACAGTTAGGGTCAAAGCACCTACGGGTCTGTAGGTGTAGCGGCGACTACCGTGTCGTCGAAGTAAGCGTCGTACACCTACACCTACGTCGCGGTGGGAGCAGCAGTAGTAGTAGCCGCCA ************************************************(((......))).............(((.((((...(((......((((((((...((((.......((((.(((...........))).))))..(((((((......)))))))..)))))))).)))).)))..))))...)))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body
..............................................................................................................GGTGACGTCGAGCCTCCAGGACAG....................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................CGTGGCCGCGGTGACA.....................................................................................................................................	16	1	3	0.33	1	0	1	0	0	0	0
............................................................................................................GTGGTGACGTCGGGCTTCCA..........................................................................................................................	20	3	7	0.29	2	0	0	2	0	0	0
............................................................................................................................................TCAAGGCACCTACAGTTCTG..........................................................................................	20	3	6	0.17	1	0	0	0	0	1	0
...................................................ACGTGGTGGTGTTGCTCGG....................................................................................................................................................................................	19	2	8	0.13	1	0	0	0	1	0	0
..................................................CACGTGGTGGGGTTTGAGGG....................................................................................................................................................................................	20	3	13	0.08	1	0	0	0	0	0	1
.................................................................................................TTGTAGTGGCCGCGGTG........................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................TACGTCGCGGGTGGAG.....................	16	2	20	0.05	1	0	0	0	1	0	0
......................................................................................................GCGGCCGCGGTGACG.....................................................................................................................................	15	1	20	0.05	1	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	x:7675194-7675443 +	dsi_20182	CGGCGA----TTTACCAACAGA---GG---CAGCAGCAG---CAGCAAC------------AGCAGCAGCAGCAG-------------------------------------------------------------------------------------------------GTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGACGAGCCAACTGAATCGAGCCACAGCACCGGCGCCACTGCAGCTCGGAGGTCCTGTCAATCCCAGTTTCGTGGATGCCC-AGAC--ATC--------CACATCGCC--------------------------------------------------------GCTGATGGCACAGCAGCTTCATTCGCAGCATGTGGATGTGGATG---CAGCGC--CACCC-TCGT----------CGTCATCATCATCGGCGG------T
droSec2	scaffold_44:194794-195037 +		CGGCGA----TTTACCAACAGA---GG---CAGCAGCAA---CAGCAGC------------AGC------AGCAG-------------------------------------------------------------------------------------------------GTGCACCACC----------------------------------------------------------------ACAACCACCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGACGAGCCAACTGAATCGAGCCACAGCACCGGCGCCACTGCAGCTCGGAGGTCCTGTCAATCCCAGTTTCGTGGATGCCC-AGAC--ATC--------CACATCGCC--------------------------------------------------------GCTGATGGCACAGCAGCTTCATTCGCAGCATGTGGATGTGGATG---CAGCGC--CACCC-TCGT----------CGTCATCATCATCGGCGG------T
dm3	chrX:8103539-8103803 +		CGGCGA----TTTACCAACAGA---GG---CAGCAGCAA---CAACATC------------AGC------------AGCAGCAGCAA---------C-------AG------CA-------------------------GCAG--------------------C---AGCCGGTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGCGAGCCAACTGAATAGAGCCACAGCACCGGCGCCACTGCAGCTTGGAGGTCCTGTCAATCCCAGTTTCGTGGATGCCC-AGAC--ATC--------CACATCACC--------------------------------------------------------GCTGATGGCACAGCAGCTTCATTCGCAGCATGCGGATGTGGATG---CAGCGC--CACCA-TCGT----------CGTCATCATCATCAGCGG------T
droEre2	scaffold_4690:10471168-10471420 +		CGGCGA----TTTACCAGCAGA---GG---CAGCAGCAG---CAGCAAC------------AGC---------------AGCAGCAG---------C-------AG------CAGC---------------------------------------------------AG---GTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGACGAGCCAACTCAATCGACCCACAGCACCGGCGCCGCTGCAACTTGGAGGTCCTGTCAATCCCAGCTTCGTGGACGCCC-AGAC--ATC--------CACATCGCC--------------------------------------------------------GCTGATGGGACACTATCAGCAGCAGCAGCACCAGGATGTGGATG---CAGCAG--CGCCC-TCGT----------CGTC---ATCATCATCGG------C
droYak3	X:13210899-13211127 -		CGGCGA----TTTACCAACAGA---GG---CAACAGCAT---CA------------------------------G-------------------------------------------------------------------------------------------------GTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGACGAGCCAACTCAATCGACCCACAGCACCGGCGCCGCTGCAACTTGGCGGTCCTATCAATCCCAGTTTCGTGGATGCCC-AGAC--ATC--------CACATCACC--------------------------------------------------------GCTGATGGCGCAGCATTTGCTGCAGCAGCAGCAGGATGTGGATG---CAGCAC--CACCC-TCGT----------CGTC---ATCGTCAGCGG------T
droEug1	scf7180000409064:182765-182993 +		CGGCGA----TCCACCAACAAA---GG---CAGCAGCAA---AGTCAAC------------AGCAGCAGCAGCAA-------------------------------------------------------------------------------------------------GTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCAAGTACACTCAATCGACCCACGGCGCCGGCACCACTGCAACTTGGAGGTCCTGTGAATCCCAGTTTTGTGGATGCCC-AGAC--ATC--------CACTTCACC--------------------------------------------------------GCTGATGGTGCAGC---------------AGCAGGATGTGG---------CAC--AACCG-CCAA----------TTTCGACATCATCATCGG------T
droBia1	scf7180000302421:2039468-2039735 +		CTGCGA----TACACCAGCAGA---GG---GTGCAGCAG---CAGCAGC------------AGC------AGCAG-------------------------------------------------------------------------------------------------TTGCACCACCACAGCAGCAACCTCCCACCA---GCAGCAGCAGCAGCAGCA---------GCATCAGCAGGAG----------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACCAGCCAACTCAATCGACCCTCGGCACCGGCACCACTGCAACTCGGAGGACCCGTCAATCCCTGCTTCGTGGATGCCC-AGAC--TTC--------GACGTCGCC--------------------------------------------------------GCTGATGCTGCAACAGCCGCAGCAGCAGCAGCAGGATGTGG--------------CACTT-G-------------------CAACCTCATCGT------C
droTak1	scf7180000415141:182079-182310 +		CGGCGA----TCCATCAGCAGA---GAGCCCAGCAGCAG---CAGCAGCAGCAGCAGTTGC------------------------AACAT------C-------AT---------------------CC---------------------------------------------------------------------------------------GGCGGTG---------GCAG-------------------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCCAGCCAACTCAATCGACCCACGGCACCGGCACCTCTGCAGCTCGGAGGTCCCGTCAATCCCTGTTTCGTGGATGCCC-AGAC--TTC--------CACGTCGCC--------------------------------------------------------ACTGATGGTGCAGCAG---------CAACAGCAGGATGTGG--------------CAGCC-TCAT----------CGTC---------AGCGGCAAATGT
droEle1	scf7180000491087:122802-123044 +		CAGCAA----C--AGCAACAGC---AG---CAGCAGCAG---CAGCAAC------------AAC------------AGCAGCAGCAA---------C-------AG------CAAC---------------------------------------------------AG---CTGCACGGCGA-------------TCCCGACGACGAGGAGGTGGAGAATGC------------------------------------------------------------------CCGCCTGGAGCAGGTGCG-------------------------------------TCGCAAGCAGAACGCCCA-------------------GCTCAGCCTGGTGGAGTCCTT--------------------------------CCTGACCACCAC--CGC-----------------------------------------------------------------------------------------------------------------------CCAGCG--------------------------------------------------------GCTGAGTGCCCAGCAG---CAGGTGCAACAG---GTGGTGGCCG---CAGCGG--CGGCC-GTTT----------CGG--CCATGGCCGGAGC------T
droRho1	scf7180000779675:56737-56976 -		CAGCGA----TCCACCACCAGA---GG---CAGCAGCAG---CACCACC------------ATC------------ATCAGA---AT---------TACCCAGGAG---TAGG----------------------------------------------------------------------------------------------------AGTAGGAGGA---------GTAGGAGGAGGAG----------CAG-------------TTGCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAT---------CTTCTGGCAATCAACTCAATCGAGCCACTGCACCGGCACCACTGCAACTTGGAGGTCCTGTGAATCCCAGTTTTGTGGATGCCC-AGAC--ATC--------CACTTCACC--------------------------------------------------------GCTGATGGC----------------CAGTTGCGAGATTAGGATG---CAGCAA--G--------------------------------ATCCG------C
droFic1	scf7180000454077:1887703-1887961 -		CGGCGA----TCCACCAGCAGC---GG---CAGCAGCAG---CAGCAGC------------AGC---------------AGCAGCAT---------C-------AGCAGCAGC----------------------------------------------------------------------------------------------------ACCACCATCA---------ACAGCAGCAGCAACACAGCCACCCACCTGCAACATCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTTCTTCGTCAGCGTCCAGCCAATTGAATCGTGTGGCAGTGCCAGCGCCACTGCAACTCGGAGGTCCTGTGAATCCCTGCTTCGTGGACGCCC-AGAC--GTC--------CACATCGCC--------------------------------------------------------GCTGATGGTGGGC---------------CACCAGGATGTGGTGG---TGGCGC--CACC-----------------------------------------
droKik1	scf7180000302395:362844-363083 +		CAGCAA----C--AACAACAGC---AG---CAGCAGCAG---CAGCAAC------------AAC------------AACACC----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGCAGCAGCA---------ACACCAGCAACATGG--------CAG---CAA-------CGC-CATTGATCCACTGC---------------------------------------------------------------------------------------------------------------TTCCGCCTCCGCCGCCGCCAATTGCTCTGCATCAGCTGACCACCAGTGCTT--------------------CC---------------------------------------------------------------ATTGAGCACAGTC-ATCC--T-----------TCGCAGCA--------------------------------------------------------GCTACAGCTGCAACATCAACAGCAGC----------------AG---CAGCAA--CACTC-T--C----------CGTATGCCACATTGCCGC-----GT
droAna3	scaffold_13117:3530204-3530454 -		GGCACA----TGCAACAACTAC---AG---CAGCAGCAGCAGCAGCAGC------------AGC------------AACAGC---CA---------C----------------------------------------------CGCCACCCACGTCCCAGATGCAGCAG---TTGCATCATCA-------------CCTCCAGCAGCAGC---AGCAACAGCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTCCTCGCGATC--GGCTGCGAG--------------TCC--------CTTGTCGCCGCCCCGCCCTGGAGCACCGCC--CGGAGGCGGTAGC-GGTGGCAGCAGTGGTGGCG----------------------------------------GAAG---TGGCAA--CAACC-CCAG----------CAACAGCAGCACCGGCGG------C
droBip1	scf7180000396708:1714736-1714973 -		--GCCA----TGCAGCAGCACC---ACCTCCAGCAGCAA---CAGCAGCAGCAGCAGTTGC------------------------AACAGCAACAAC----AACAG-------------------------------------------------------------------------------------------------------------CAGCAGCAGGAGCAGCAACAGCAGCAACA---CT---------------------------------------------TGCAGCAACTGCA-------------------------------------TC---AGCATGCCGCTCA-------------------CCACCACCTGCCTCAGCCTCT--------------------------------GCATACCACCAG--CCT--------------------CC---------------------------------------------------------------A----------------------------------T-------------------------------------------------------------CACAGTGCGCTGCCCCACCAGCAGCAGCAGCATTCCGTGGTCG---CATCCT--CGCCC-TCCT----------CGGT----GCTCCAGCAG------C
dp5	XR_group6:10821256-10821511 -		CAGCGCGAAATGGAGCAGCAGC---AG---CAGCAGCAA---CAGCAGC------------AGC---------------AGCAGCAG---------C-------AG------CAGAAGGAGAAGCCACCAGCAGCAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------CGGCTGTTGTCCCGCCGACCGCCAGCAGCAAGCGTCATCCGCTGCACTGTGATAGCCCCTTTTCCGCGCAGACCCACAAGGAGATCGCCAATCTGTTGCGGCAGCAGTCC-------------------------------------------------------------------------------------------------------------------------------------------------CAGTCCCA--------------------------------------------------------------------------------------------------GTCGCAGTCACAGCCCCTGCAGCAGCAGCA-------------------GCAA--CATCC-T-------------------CAGCAACAGCAG------C
droPer2	scaffold_20:731475-731744 -		CAGCGCGAAATGGAGCAGCAGC---AG---CAGCAGCAA---CAGCAGC------------AGC---------------AGC----------------------AG------CAGAAGGAGAAGCCACCAGCAGCAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------CGGCTGTTGTCCCGCCGACCGCCAGCAGCAAGCGTCACCCGCTGCACTGTGATAGCCCCTTTTCCGCTCAGACCCACAAGGAGATCGCCAATCTGTTGCGGCAGCAGTCC-------------------------------------------------------------------------------------------------------------------------------------------------CAGTCCCAG------------------------------------TCGCA--------------------------------------------------------GTCGCAGTCACAGCCCCTGCAGCAGCAGCAGC----------AG---CAGCAA--CATCC-TCAG----------CAACAGCAGCAGCAGCAG-------
droWil2	scf2_1100000004515:3861472-3861682 -		CAGCAG----C--AGCAGCAGC---AG---CAGCAGCGG---CAGCAGC------------A------------GGAACAGC----------------------AC----------------------CGACAACTAC-----TGCCAC------ACTGGATGCAGC----------------------------------------------AGCGGCTTCA---------ACAGCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCTGCAAC---------ATCTCAATA-TAGTGGAGTAAGTGCCG-TAGT--GGC--------AACATCATT--------------------------------------------------------GCAACAGCCACAGCAGCAGCAGCAGCAGCA-------------------GCAG--CAACC-GCAA----CAGCAGCAA--CAGTCATCGGCGG------C
droVir3	scaffold_13047:4280845-4281080 +		TGGCGC----AACAGCAACAGT---TG---CAGCAGCAG---CAACAAC------------AGC------------AACAGC----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACAGCAGCAGCAA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAACAGC-----AACCACTGCAACTAGGCGAACTCTCCGACTTTGGAC---TGGATGCACTAGATGCTGC--------CTCATTGTC--------------------------------------------------------GCCGACGCTGC------------TGCAGGACGTTAGCCTGGGCG---CTGCCT--CGCCGCTCAG----------CTCCACGCTCTACAGCAG------C
droMoj3	scaffold_6473:14073232-14073487 -		CAGCAA----C--AGCAGCAACAACAG---CAGCATCAA---CAGCAGCAGCAGCAATTGC------------------------AACAT------C-------AG------CAAC---------------------------------------------------AA---CTTCATCACCA-------------TCACCATCATCATCAGCAGCAGCAGCA---------GCAGCAGCAACAG----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATC----------------------------------------------------------------------AGCAACAGCAACGT--ATTGCC-AGCA--ATCAGCAGCAACACAACGCA--------------------------------------------------------GCAGCAGGCAACGCTGCTGCG-TCGCATCAAGTGCATGATAATGGACCAACGT--C-CCA-TCAT----------CTACATCATCATCAGCAG------C
droGri2	scaffold_15203:5085007-5085236 +		CAGCAA----C--ACCACCAGC---AG---CAGCAGCAA---CAACACC------------ACC------------AGCAGCAGCAG---------C-------AG------CAGC---------------------------------------------------AA---CAGCACCACC-------------------A------------------ACA------------GCAG----------------CAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAG-----------CAGC-AGCAACAACACC------ACCA----------------GCAACT--GACGTCACA---------G-----GC--------GCATGCACCACGTGGTCTGGTGGCACCGCCAACGATGTCTACAGCCACTGGCAGCATTGGTTGTG----------------------------------------G-TC---CAGCGCAACACCT-TAGTTCGGTG--AGCGT----CTCCTCGGCGG------C

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGGCGA----TTTACCAACAGA---GG---CAGCAGCAG---CAGCAAC------------AGCAGCAGCAGCAG-------------------------------------------------------------------------------------------------GTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGACGAGCCAACTGAATCGAGCCACAGCACCGGCGCCACTGCAGCTCGGAGGTCCTGTCAATCCCAGTTTCGTGGATGCCC-AGAC--ATC--------CACATCGCC--------------------------------------------------------GCTGATGGCACAGCAGCTTCATTCGCAGCATGTGGATGTGGATG---CAGCGC--CACCC-TCGT----------CGTCATCATCATCGGCGG------T	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............CAACAGA---GG---CAGCAGCAG---CAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATG---CAGCGC--CAT..........................................	16	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGC--CACCC-TCGT----------CGG......................	16	8	0.13	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................AGCAG---CAGCAAC------------AGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGGCGA----TTTACCAACAGA---GG---CAGCAGCAA---CAGCAGC------------AGC------AGCAG-------------------------------------------------------------------------------------------------GTGCACCACC----------------------------------------------------------------ACAACCACCCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGACGAGCCAACTGAATCGAGCCACAGCACCGGCGCCACTGCAGCTCGGAGGTCCTGTCAATCCCAGTTTCGTGGATGCCC-AGAC--ATC--------CACATCGCC--------------------------------------------------------GCTGATGGCACAGCAGCTTCATTCGCAGCATGTGGATGTGGATG---CAGCGC--CACCC-TCGT----------CGTCATCATCATCGGCGG------T	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................GCAA---CAGCAGC------------AGC------AGCAG-------------------------------------------------------------------------------------------------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0
.....................................AA---CAGCAGC------------AGC------AGCAG-------------------------------------------------------------------------------------------------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0

dm3

CGGCGA----TTTACCAACAGA---GG---CAGCAGCAA---CAACATC------------AGC------------AGCAGCAGCAA---------C-------AG------CA-------------------------GCAG--------------------C---AGCCGGTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGCGAGCCAACTGAATAGAGCCACAGCACCGGCGCCACTGCAGCTTGGAGGTCCTGTCAATCCCAGTTTCGTGGATGCCC-AGAC--ATC--------CACATCACC--------------------------------------------------------GCTGATGGCACAGCAGCTTCATTCGCAGCATGCGGATGTGGATG---CAGCGC--CACCA-TCGT----------CGTCATCATCATCAGCGG------T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................AA---CAACATC------------AGC------------AGCAGCAGCAA---------C-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGCCACAGCACCGGCGCCACTGC..............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATGTGGATG---CAGCGC--CACCA-T......................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................ACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGCGAGCCAACTGAATA......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGATG---CAGCGC--CACCA-T......................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTTCATTCGCAGCATGCGGA................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGATGTGGATG---CAGCGC--CACCA-TCG....................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................ACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGGCGAGCCAACTGAATAGAG...................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT----------CGTCATCATCATCA...........	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................AGC------------AGCAGCAGCAA---------C-------AG------CA-------------------------GCAG--------------------C---AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................C------------AGC------------AGCAGCAGCAA---------C-------AG------CA-------------------------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAACATC------------AGC------------AGCAGCAGCAA---------C-------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CGGCGA----TTTACCAGCAGA---GG---CAGCAGCAG---CAGCAAC------------AGC---------------AGCAGCAG---------C-------AG------CAGC---------------------------------------------------AG---GTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGACGAGCCAACTCAATCGACCCACAGCACCGGCGCCGCTGCAACTTGGAGGTCCTGTCAATCCCAGCTTCGTGGACGCCC-AGAC--ATC--------CACATCGCC--------------------------------------------------------GCTGATGGGACACTATCAGCAGCAGCAGCACCAGGATGTGGATG---CAGCAG--CGCCC-TCGT----------CGTC---ATCATCATCGG------C	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCC-AGAC--ATC--------CACATCGCC--------------------------------------------------------GCT.................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.............................................CAAC------------AGC---------------AGCAGCAG---------C-------AG------CAGC---------------------------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0
.................................CAGCAG---CAGCAAC------------AGC---------------AGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0
....................................CAG---CAGCAAC------------AGC---------------AGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
...........................................AGCAAC------------AGC---------------AGCAGCAG---------C-------AG------CAGC---------------------------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1	0
..........................G---CAGCAGCAG---CAGCAAC------------AGC---------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0

droYak3

CGGCGA----TTTACCAACAGA---GG---CAACAGCAT---CA------------------------------G-------------------------------------------------------------------------------------------------GTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGACGAGCCAACTCAATCGACCCACAGCACCGGCGCCGCTGCAACTTGGCGGTCCTATCAATCCCAGTTTCGTGGATGCCC-AGAC--ATC--------CACATCACC--------------------------------------------------------GCTGATGGCGCAGCATTTGCTGCAGCAGCAGCAGGATGTGGATG---CAGCAC--CACCC-TCGT----------CGTC---ATCGTCAGCGG------T

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

CGGCGA----TCCACCAACAAA---GG---CAGCAGCAA---AGTCAAC------------AGCAGCAGCAGCAA-------------------------------------------------------------------------------------------------GTGCACCACC----------------------------------------------------------------ACAACCACCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCAAGTACACTCAATCGACCCACGGCGCCGGCACCACTGCAACTTGGAGGTCCTGTGAATCCCAGTTTTGTGGATGCCC-AGAC--ATC--------CACTTCACC--------------------------------------------------------GCTGATGGTGCAGC---------------AGCAGGATGTGG---------CAC--AACCG-CCAA----------TTTCGACATCATCATCGG------T	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CTGCGA----TACACCAGCAGA---GG---GTGCAGCAG---CAGCAGC------------AGC------AGCAG-------------------------------------------------------------------------------------------------TTGCACCACCACAGCAGCAACCTCCCACCA---GCAGCAGCAGCAGCAGCA---------GCATCAGCAGGAG----------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACCAGCCAACTCAATCGACCCTCGGCACCGGCACCACTGCAACTCGGAGGACCCGTCAATCCCTGCTTCGTGGATGCCC-AGAC--TTC--------GACGTCGCC--------------------------------------------------------GCTGATGCTGCAACAGCCGCAGCAGCAGCAGCAGGATGTGG--------------CACTT-G-------------------CAACCTCATCGT------C	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGGCGA----TCCATCAGCAGA---GAGCCCAGCAGCAG---CAGCAGCAGCAGCAGTTGC------------------------AACAT------C-------AT---------------------CC---------------------------------------------------------------------------------------GGCGGTG---------GCAG-------------------CAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACATCCAGCCAACTCAATCGACCCACGGCACCGGCACCTCTGCAGCTCGGAGGTCCCGTCAATCCCTGTTTCGTGGATGCCC-AGAC--TTC--------CACGTCGCC--------------------------------------------------------ACTGATGGTGCAGCAG---------CAACAGCAGGATGTGG--------------CAGCC-TCAT----------CGTC---------AGCGGCAAATGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGCAA----C--AGCAACAGC---AG---CAGCAGCAG---CAGCAAC------------AAC------------AGCAGCAGCAA---------C-------AG------CAAC---------------------------------------------------AG---CTGCACGGCGA-------------TCCCGACGACGAGGAGGTGGAGAATGC------------------------------------------------------------------CCGCCTGGAGCAGGTGCG-------------------------------------TCGCAAGCAGAACGCCCA-------------------GCTCAGCCTGGTGGAGTCCTT--------------------------------CCTGACCACCAC--CGC-----------------------------------------------------------------------------------------------------------------------CCAGCG--------------------------------------------------------GCTGAGTGCCCAGCAG---CAGGTGCAACAG---GTGGTGGCCG---CAGCGG--CGGCC-GTTT----------CGG--CCATGGCCGGAGC------T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAGCGA----TCCACCACCAGA---GG---CAGCAGCAG---CACCACC------------ATC------------ATCAGA---AT---------TACCCAGGAG---TAGG----------------------------------------------------------------------------------------------------AGTAGGAGGA---------GTAGGAGGAGGAG----------CAG-------------TTGCAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAT---------CTTCTGGCAATCAACTCAATCGAGCCACTGCACCGGCACCACTGCAACTTGGAGGTCCTGTGAATCCCAGTTTTGTGGATGCCC-AGAC--ATC--------CACTTCACC--------------------------------------------------------GCTGATGGC----------------CAGTTGCGAGATTAGGATG---CAGCAA--G--------------------------------ATCCG------C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGGCGA----TCCACCAGCAGC---GG---CAGCAGCAG---CAGCAGC------------AGC---------------AGCAGCAT---------C-------AGCAGCAGC----------------------------------------------------------------------------------------------------ACCACCATCA---------ACAGCAGCAGCAACACAGCCACCCACCTGCAACATCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCTTCTTCGTCAGCGTCCAGCCAATTGAATCGTGTGGCAGTGCCAGCGCCACTGCAACTCGGAGGTCCTGTGAATCCCTGCTTCGTGGACGCCC-AGAC--GTC--------CACATCGCC--------------------------------------------------------GCTGATGGTGGGC---------------CACCAGGATGTGGTGG---TGGCGC--CACC-----------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGCAA----C--AACAACAGC---AG---CAGCAGCAG---CAGCAAC------------AAC------------AACACC----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGCAGCAGCA---------ACACCAGCAACATGG--------CAG---CAA-------CGC-CATTGATCCACTGC---------------------------------------------------------------------------------------------------------------TTCCGCCTCCGCCGCCGCCAATTGCTCTGCATCAGCTGACCACCAGTGCTT--------------------CC---------------------------------------------------------------ATTGAGCACAGTC-ATCC--T-----------TCGCAGCA--------------------------------------------------------GCTACAGCTGCAACATCAACAGCAGC----------------AG---CAGCAA--CACTC-T--C----------CGTATGCCACATTGCCGC-----GT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGCACA----TGCAACAACTAC---AG---CAGCAGCAGCAGCAGCAGC------------AGC------------AACAGC---CA---------C----------------------------------------------CGCCACCCACGTCCCAGATGCAGCAG---TTGCATCATCA-------------CCTCCAGCAGCAGC---AGCAACAGCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTCCTCGCGATC--GGCTGCGAG--------------TCC--------CTTGTCGCCGCCCCGCCCTGGAGCACCGCC--CGGAGGCGGTAGC-GGTGGCAGCAGTGGTGGCG----------------------------------------GAAG---TGGCAA--CAACC-CCAG----------CAACAGCAGCACCGGCGG------C	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGTGGCG----------------------------------------GAAG---TGGC.................................................	20	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCAGTGGTGGCG----------------------------------------GAAG---T....................................................	21	1	1.00	1	1	0	0	0	0	0
............CAACAACTAC---AG---CAGCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--CAACC-CCAG----------CAACAGCAGCACCGGC.........	28	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTCGCGATC--GGCTGCGAG--------------TCC--------CTTGTC...............................................................................................................................................................	30	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAGGCGGTAGC-GGTGGCA................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................GCAG---TTGCATCATCA-------------CCTCCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCCCCGCCCTGGAG..............................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC--CGGAGGCGGTAGC-GGTG...................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................GCATCATCA-------------CCTCCAGCAGCAGC---AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................CACCCACGTCCCAGATGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................GCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTCCTCGCGATC--GG.....................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................CAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTCCTCGCGATC--GG.....................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCC--CGGAGGCGGTAGC-GGTGG..................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--CAACC-CCAG----------CAACAGCAGCACC............	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................GCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTCCTCGCGATC--GGCT...................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGCAGTGGTGGCG----------------------------------------GA..........................................................	20	1	1.00	1	0	0	0	0	0	1
.............................................................................ACAGC---CA---------C----------------------------------------------CGCCACCCACGTCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
....CA----TGCAACAACTAC---AG---CAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGTGGCG----------------------------------------GAAG---TGGCA................................................	19	2	0.50	1	1	0	0	0	0	0
............CAACAACTAC---AG---CAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................AGCAACAGCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTC..................................................................................................................................................................................................................	28	3	0.33	1	0	0	0	0	1	0
......................................................................................................................................................................................................TCCAGCAGCAGC---AGCAACAGCA---------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	1
............................................................................................................................................................................................................................GCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTCC.................................................................................................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................ACAGCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA.....................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	4
........................................................................................................................................................................................................................................ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTCC.................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................AGCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA.....................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	3
............................................................................................................................................................................................................................GCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTC..................................................................................................................................................................................................................	21	8	0.13	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................CA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGTC..................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................CA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGT...................................................................................................................................................................................................................	19	19	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................C---AGCAACAGCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC......................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................AGCAACAGCA---------ACAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................AGCAGCAGC------------AGC------------AACAGC---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................AGCAACAGCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................AGCAGCAGC---AGCAACAGCA---------ACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................................................AGC---AGCAACAGCA---------ACAGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

--GCCA----TGCAGCAGCACC---ACCTCCAGCAGCAA---CAGCAGCAGCAGCAGTTGC------------------------AACAGCAACAAC----AACAG-------------------------------------------------------------------------------------------------------------CAGCAGCAGGAGCAGCAACAGCAGCAACA---CT---------------------------------------------TGCAGCAACTGCA-------------------------------------TC---AGCATGCCGCTCA-------------------CCACCACCTGCCTCAGCCTCT--------------------------------GCATACCACCAG--CCT--------------------CC---------------------------------------------------------------A----------------------------------T-------------------------------------------------------------CACAGTGCGCTGCCCCACCAGCAGCAGCAGCATTCCGTGGTCG---CATCCT--CGCCC-TCCT----------CGGT----GCTCCAGCAG------C	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGCGCGAAATGGAGCAGCAGC---AG---CAGCAGCAA---CAGCAGC------------AGC---------------AGCAGCAG---------C-------AG------CAGAAGGAGAAGCCACCAGCAGCAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------CGGCTGTTGTCCCGCCGACCGCCAGCAGCAAGCGTCATCCGCTGCACTGTGATAGCCCCTTTTCCGCGCAGACCCACAAGGAGATCGCCAATCTGTTGCGGCAGCAGTCC-------------------------------------------------------------------------------------------------------------------------------------------------CAGTCCCA--------------------------------------------------------------------------------------------------GTCGCAGTCACAGCCCCTGCAGCAGCAGCA-------------------GCAA--CATCC-T-------------------CAGCAACAGCAG------C	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........ATGGAGCAGCAGC---AG---CAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	1	0	0	0	0	0
.........ATGGAGCAGCAGC---AG---CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	1	0	0	0
..........................G---CAGCAGCAA---CAGCAGC------------AGC---------------AGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................AGCAGC------------AGC---------------AGCAGCAG---------C-------AG------CAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............CAGCAGC---AG---CAGCAGCAA---CAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............GCAGCAGC---AG---CAGCAGCAA---CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0

droPer2

CAGCGCGAAATGGAGCAGCAGC---AG---CAGCAGCAA---CAGCAGC------------AGC---------------AGC----------------------AG------CAGAAGGAGAAGCCACCAGCAGCAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------CGGCTGTTGTCCCGCCGACCGCCAGCAGCAAGCGTCACCCGCTGCACTGTGATAGCCCCTTTTCCGCTCAGACCCACAAGGAGATCGCCAATCTGTTGCGGCAGCAGTCC-------------------------------------------------------------------------------------------------------------------------------------------------CAGTCCCAG------------------------------------TCGCA--------------------------------------------------------GTCGCAGTCACAGCCCCTGCAGCAGCAGCAGC----------AG---CAGCAA--CATCC-TCAG----------CAACAGCAGCAGCAGCAG-------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
CAGCGCGAAATGGAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................................................................................TCGCCAATCTGTTGCGGC.......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0

droWil2

CAGCAG----C--AGCAGCAGC---AG---CAGCAGCGG---CAGCAGC------------A------------GGAACAGC----------------------AC----------------------CGACAACTAC-----TGCCAC------ACTGGATGCAGC----------------------------------------------AGCGGCTTCA---------ACAGCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCTGCAAC---------ATCTCAATA-TAGTGGAGTAAGTGCCG-TAGT--GGC--------AACATCATT--------------------------------------------------------GCAACAGCCACAGCAGCAGCAGCAGCAGCA-------------------GCAG--CAACC-GCAA----CAGCAGCAA--CAGTCATCGGCGG------C	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................GC------------A------------GGAACAGC----------------------AC----------------------CGACAACTAC-----T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.........................................................................................................C----------------------CGACAACTAC-----TGCCAC------ACTGGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
................................................................................................................................................GCCAC------ACTGGATGCAGC----------------------------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
...........................................AGCAGC------------A------------GGAACAGC----------------------AC----------------------CGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGGAGTAAGTGCCG-TAGT--GGC--------A....................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA--CAGTCATCGGCGG------G	21	1	1.00	1	1	0	0	0	0
....................................................................................................................................AACTAC-----TGCCAC------ACTGGATGCAGC----------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----CAGCAGCAA--CAGTCATCGGCGG------C	24	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TAGTGGAGTAAGTGCCG-TAGT--GGC--------AACAT................................................................................................................................................................	30	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATA-TAGTGGAGTAAGTGC.........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGTAAGTGCCG-TAGT--GGC--------.....................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--CAACC-GCAA----CAGCAGC........................	19	1	1.00	1	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-TAGTGGAGTAAGTGCCG-TAGT--GGC--------.....................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----CAGCAGCAA--CAGTCATCGGC.........	22	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA----CAGCAGCAA--CAGTCATCGGCGG------C	27	1	1.00	1	0	1	0	0	0
..............................CAGCAGCGG---CAGCAGC------------A------------GGAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................CTTCA---------ACAGCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCT................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.........................................................................................................................................C-----TGCCAC------ACTGGATGCAGC----------------------------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATA-TAGTGGAGTAAGTGCCG-TAGT--GG..............................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
....................GC---AG---CAGCAGCGG---CAGCAGC------------A------------GGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0
................................GCAGCGG---CAGCAGC------------A------------GGAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1
..................................................................................................................................................................GCAGC----------------------------------------------AGCGGCTTCA---------ACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCAGCAGCAGCAGCAGCA-------------------...................................................	22	20	0.15	3	0	0	0	3	0
..........................G---CAGCAGCGG---CAGCAGC------------A------------GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCCACAGCAGCAGCA...............................................................................	21	9	0.11	1	0	1	0	0	0
.................GCAGC---AG---CAGCAGCGG---CAGCAGC------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.....................C---AG---CAGCAGCGG---CAGCAGC------------A------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA-------------------GCAG--CAACC-.......................................	19	20	0.05	1	0	0	0	1	0

droVir3

TGGCGC----AACAGCAACAGT---TG---CAGCAGCAG---CAACAAC------------AGC------------AACAGC----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACAGCAGCAGCAA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAACAGC-----AACCACTGCAACTAGGCGAACTCTCCGACTTTGGAC---TGGATGCACTAGATGCTGC--------CTCATTGTC--------------------------------------------------------GCCGACGCTGC------------TGCAGGACGTTAGCCTGGGCG---CTGCCT--CGCCGCTCAG----------CTCCACGCTCTACAGCAG------C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCTCCGACTTTGGAC---TGGATGC.........................................................................................................................................................................................	26	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTTTGGAC---TGGATGCACTAGATGC................................................................................................................................................................................	27	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC------------TGCAGGACGTTAGCCT.............................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGGCGAACTCTCCGACTTTGGAC---T...............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACGTTAGCCTGGGCG---CT...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGACGTTAGCCTGGGCG---CT...................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTAGATGCTGC--------CTCATTGTC--------------------------------------------------------....................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAG----------CTCCACGCTCTACAGCAG------C	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGGCGAACTCTCCGACT.........................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACTTTGGAC---TGGATGCACT......................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGCAACTAGGCGAACTCTCC.............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACTGCAACTAGGCGAA...................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------TGCAGGACGTTAGCCTGGG..........................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACTGCAACTAGGCGAACTCT...............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGTTAGCCTGGGCG---CTGCCT--CGCC.........................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------------------AGCAACAGC-----AACCACTGCAACTAGG.......................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TG---CAGCAGCAG---CAACAAC------------AGC------------AACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....C----AACAGCAACAGT---TG---CAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAACAG.............................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................ACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAA................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GCAG---CAACAAC------------AGC------------AACAGC----------------------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................AGCAGCAGCAA----------CAG---CAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCA.................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................CAGCAG---CAACAAC------------AGC------------AACAGC----------------------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAAC------------AGC------------AACAGC----------------------AGCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CAGCAACAGT---TG---CAGCAGCAG---C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAA................................................................................................................................................................................................................................................	26	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GCAGCAA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAG....................................................................................................................................................................................................................................................................................	25	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................C----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................................AGC----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GCAGCAGCAA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A........................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CAA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------.....................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GCAGCAA----------CAG---CAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ACAGCAGCAGCAA----------CAG---CAACAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................CAG---CAACAAC------------AGC------------AACAGC----------------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................CAAC------------AGC------------AACAGC----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AG...................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................A----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGC..................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGC..................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................ACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAACA..............................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAACAGC-----A......................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................CAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAACAGC-----AA.....................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GCAACAGCA---------ACAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................C----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AACAGCA---------ACAGCAGCAGCAA----------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................AG---CAACAAC------------AGC------------AACAGC----------------------AGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................GCAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------AC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................AG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCA.................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CAA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC......................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................AGC----------------------AGCAACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GCAA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------.....................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................GC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AGCAGCAA----------CAG---CAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................AG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------A....................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ACAGCAGCAGCAA----------CAG---CAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA.....................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................A----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCA.................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................G---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGC..................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------AGCAAC...............................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAACAGCA---------ACAGCAGCAGCAA----------CAG---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................GCA---------ACAGCAGCAGCAA----------CAG---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................AGCAA----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGC------------------------------.....................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAACAAC------------AGC------------AACAGC----------------------AGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................AACAGC----------------------------------------------------------------------------------------------------AGCAACAGCA---------ACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGCAA----C--AGCAGCAACAACAG---CAGCATCAA---CAGCAGCAGCAGCAATTGC------------------------AACAT------C-------AG------CAAC---------------------------------------------------AA---CTTCATCACCA-------------TCACCATCATCATCAGCAGCAGCAGCA---------GCAGCAGCAACAG----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATC----------------------------------------------------------------------AGCAACAGCAACGT--ATTGCC-AGCA--ATCAGCAGCAACACAACGCA--------------------------------------------------------GCAGCAGGCAACGCTGCTGCG-TCGCATCAAGTGCATGATAATGGACCAACGT--C-CCA-TCAT----------CTACATCATCATCAGCAG------C	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCC-AGCA--ATCAGCAGCA......................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................AG---CAGCATCAA---CAGCAGCAGCAGCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAAGTGCATGATAAT.........................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCAACGT--C-CCA-TCAT----------CTACAT...................	24	1	1.00	1	1	0	0	0	0	0
..........................G---CAGCATCAA---CAGCAGCAGCAGCAATTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC-AGCA--ATCAGCAGCAACACAACGC.............................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATCAGCAGCAACACAACGCA--------------------------------------------------------GC..................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................TTCATCACCA-------------TCACCATCATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGCAACGCTGCTGCG-T.............................................................................	20	1	1.00	1	1	0	0	0	0	0
..................................ATCAA---CAGCAGCAGCAGCAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................AG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATC----------------------------------------------------------------------AGCAAC.......................................................................................................................................................................................................	24	5	0.20	1	0	0	0	0	1	0
.....................................................................................................................................................................................CA-------------TCACCATCATCATCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	0	0	0	1	0
...................AACAACAG---CAGCATCAA---CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	1
..........................G---CAGCATCAA---CAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.06	1	1	0	0	0	0	0
..........................G---CAGCATCAA---CAGCAGCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	19	0.05	1	0	0	0	1	0	0
...............................AGCATCAA---CAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.AGCAA----C--AGCAGCAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................AGCAGCAACAG----------CAG---CAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................ATCATCATCAGCAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
.AGCAA----C--AGCAGCAACAACAG---CAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................GCAGCAACAG----------CAG---CAACAACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC......................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0

droGri2

CAGCAA----C--ACCACCAGC---AG---CAGCAGCAA---CAACACC------------ACC------------AGCAGCAGCAG---------C-------AG------CAGC---------------------------------------------------AA---CAGCACCACC-------------------A------------------ACA------------GCAG----------------CAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAG-----------CAGC-AGCAACAACACC------ACCA----------------GCAACT--GACGTCACA---------G-----GC--------GCATGCACCACGTGGTCTGGTGGCACCGCCAACGATGTCTACAGCCACTGGCAGCATTGGTTGTG----------------------------------------G-TC---CAGCGCAACACCT-TAGTTCGGTG--AGCGT----CTCCTCGGCGG------C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................ACACC------------ACC------------AGCAGCAGCAG---------C-------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0
.....A----C--ACCACCAGC---AG---CAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	1	0
..............................................................CC------------AGCAGCAGCAG---------C-------AG------CAGC---------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0

dsi_20182

x:7675244-7675393 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads