ID:

dsi_20172

 Coordinate:

2l:1645180-1645383 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.3 -34.3 -34.2

Flybase annnotation

exon [2l_1645384_1645609_-]; CDS [2l_1645384_1645609_-]; exon [2l_1645109_1645179_-]; CDS [2l_1645109_1645179_-]; intron [2l_1645180_1645383_-]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCTTTTACCTATTCTCTCATGCCCATCTAACCCACCGCCACTGCATCCTAACAAGCTAAGCCCGAGTCCGTTCCGATGCCAAATGCCTACGAAAGGAGCGGTCTCGAACACCTTCAATGCGATGCCTTCATCTCCATTGCCTTTGAGCCTGGATTCGACTGGTTTACTAACTCACCTGTTTTTGCCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCAT
**************************************************....................................................(((((....((((((.((((((((((.(((((((....................))))))).))))....(((((((.((((((..........))))))..)))))...))........))))))))........)))).......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.................TCACAGCCAAAGTTGATTGGAG......................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................CATGGCCATTTCACACTGCGGC.......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTCACCTGTTTTTGCCTTGC.................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................CTCATCCACAACGCCCAAA..... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................CATGGCCATTTCACACTGCGAC.......................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTGGATTCGACAGGTATAGT.......................................................................... 20 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.................TCACAGCCACAGGTGATT............................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................CCAAGTGACTACGAAAGGA................................................................................................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACTGCCTTTGAGACTGGATT....................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTGGATTCGACTGGTATA............................................................................ 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTGGATTCGACTGGTATAG........................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TTACAGATCATGGCCA........................................ 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................TCTGGATTCGACTGGTATAG........................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCGACTGGTTTACTGAGTCG.................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................TGCCTTTGAGACTGGAT........................................................................................ 17 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................CCAAGGGACTACGAAAGGA................................................................................................................................................. 19 3 20 0.20 4 0 0 4 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CTGGATTCGACTGGTATAGG.......................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
................................ATTGGTGGTATGCGTAGA.............................................................................................................................................................................................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
............................................................................................................................................................................................................................................................AGATCATGGCCGTTTG.................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCTATAATGCATTGTCTAGTGTCGGTGTCCACTAACCCCCACACGCATCCCATCATGGTTGAAGAAAATGGATAAGAGAGTACGGGTAGATTGGGTGGCGGTGACGTAGGATTGTTCGATTCGGGCTCAGGCAAGGCTACGGTTTACGGATGCTTTCCTCGCCAGAGCTTGTGGAAGTTACGCTACGGAAGTAGAGGTAACGGAAACTCGGACCTAAGCTGACCAAATGATTGAGTGGACAAAAACGGAACGTCTAGTACCGGTAAAGTGTGACGCCGTAGAGTAGGTGTTGCGGGTTTAGGTA
**************************************************....................................................(((((....((((((.((((((((((.(((((((....................))))))).))))....(((((((.((((((..........))))))..)))))...))........))))))))........)))).......)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR902009
testis
 M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................AACTCGGACCTAAGCTGAC................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................ACGTAGGATTGTTTGAT........................................................................................................................................................................................ 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GTGACGCGGTAGAGGAGATG............... 20 3 9 0.89 8 8 0 0 0 0 0 0 0 0
.............................................................................................................................CTCAGGCAACGATACGGT................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................CGGAGAGGAGGTGTTGCGGGT....... 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0
.........................................................GTTGCAGAGGATGGATAAGA................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0
......................................................ATGGATGAAGAAAATG.......................................................................................................................................................................................................................................... 16 1 4 0.25 1 0 1 0 0 0 0 0 0 0
.............................................................................GAGTACGTGTAGATCGGGTAG.............................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................GTGACGCTGTAGAGGAGATG............... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................GGGACGCGGTAGAGTAGATG............... 20 3 13 0.15 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................TCCTCTCCTGAGCTTG..................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 1 0 1
....................................................................................................................................................................................................GTAACGGAAGGTCGGGCCTA........................................................................................ 20 3 13 0.08 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................CCGTAGTGTAGGTCTTG............ 17 2 14 0.07 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................TCACGCCGTAGAGTAGA................. 17 2 18 0.06 1 0 0 0 0 0 0 1 0 0
..........................................................TTGCAGAGGATGGATAAG.................................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TAGGTGTTGCGTGCTT..... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................CGGAAGTGGAAGTAACG...................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
............................................GCATCGCATTATGGTT.................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:1645130-1645433 - dsi_20172 CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------AT-GCCCATCTAA-CCCACC--------------------------------------------------------------------------------------------------------------GCCA-CTGCATCCTAACAA-----GCT---------------------------------AAG--CC-----------------CGAGTCCGTTCCGATGCCAAATGCCTA-------------CG------------------AAA-------GGAGCGGTCTC-GAACACCTTCAAT-------------G-C---GATGCCTTCATCTCCATTGCCTTTGAGC--CT----GGATTCGACTGG-TTT-ACTA--------------ACTC--------------------A-CCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCAT
droSec2 scaffold_14:1652873-1653176 - CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------AT-GCCCATCTAA-CCCACC--------------------------------------------------------------------------------------------------------------GCCA-CTGCATCCTAACAA-----GCT---------------------------------AAG--CC-----------------CGAGTCCGTTCCGACGCCAAATGCCTA-------------CG------------------AAA-------GGAGCGGTCTC-GAACACCTTCGAT-------------G-C---GATGCCTTCATCTCCATTGCCTTTGAGC--CT----GGATTGGACTTA-TTT-ACTA--------------ACTC--------------------A-CCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCAT
dm3 chr2L:1718442-1718724 - CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------ATCGCCCATCTAA-CCCACC--------------------------------------------------------------------------------------------------------------GCCA-CTGCATCCTAACAA-----GCT---------------------------------AAG--CC-----------------C-------------------------A-------------CG------------------AAA------TGGAGTGGTCTC-GAACAACTTCGAT-------------G-CGTCGTTGCCTTCATCTCCATTGCCTC-TAGT--CT----GGATGCGACTGG-TTT-ACTA--------------ACTC--------------------A-CCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCAT
droEre2 scaffold_4929:1761904-1762212 - CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTT----ATGCCCAT------------------------------------------------CTCAT-GCCCATCTAA-CCCACC----------------------------------TGCATCCCAGCCACTGCATCCA-----------------------------------------------------AGCCA-CTGCATCCTAACAA-----GCT---------------------------------AAG--CCCCGACTCCC--------------------GATGC-------------CAG-------CG------------------AAG-------CG-----------AGCACCTACG----------------------ATGCCTTCATCTCCATTGCCTC-CAGC--CT----GGACTACAATGG-TGT-ACTA--------------ACTG--------------------AACCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCAT
droYak3 2L:1688829-1689170 - CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------AT-GCCCATCTAA-CCCACC-----------------GCCCAC-----------TGC-------CCACTGCATCTAAGCCACTGCCACTGTCACTGC------CA-----------------------CTGCCA-CTGCATCCTAACAA-----GCT---------------------------------AAAACTCCCGACTCCC--------------------GATGC-------------C---------------------------------------------------TGGCACCTTCGATCGATGCCTTCGATTCCATCGATGCCTTCATCTCCATTGCCGC-CAGC--CT--GC-GATTGGAGTGC-TTT-ACTA--------------ACTC--------------------AACCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAGTCCAT
droEug1 scf7180000407252:61753-62072 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTT-----------------T--------------------------------------CTCAT-ACCCATTTAAACCCAC--------------------------------------------------------------------------------------------------------------TGCCA-CTGCATCCTAACT----TAGCTTGATCTCAAGCCATATAACCTCTTTGCA---C---------------------TCTG---------------------------------A-----AAA----------------AAATA------TGATACAGCCTTTTAACACCTTCG----------------------ATACCTTCATCTCCATTGCCTT-GTAT--TT----GGT-TTCTATGG-TTT-TCTA--------------ATTA--------------------AATATCTTCTT---TTT--TTGTGCCCTTGCAGATCATGGCTATTTCACATTGCGGCATCTCATCCACAACACCCAAAACCAT
droBia1 scf7180000302188:91927-92217 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTC-----------------------------------------------------------AT-GCCCATCTAAACCC----------------------------------------------------------------CT---------------------------------------------TTGCCA-CTGCATCCTAACTA-----GCT----------------------------AACCTAAG--CC--------------CTG---------------------------------G-----CAC----A-------------ACA------GGGACCAGCCTT-TAACACCTTCG----------------------ATACCTTCATCTCCATTGCCTC-GCCT--TC----AGT-TTTTATAACATT-TCTA--------------ATCA--------------------AGAGTG----T---TTT--TTACCCCCTTCCAGATCATGGCCATCTCACACTGCGGCATCTCATCCACAACCCCCAAAACCAT
droTak1 scf7180000415779:130770-131087 - CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTC-----------------------------------------------------------ATCCCCCATCTAAATCCATT---------------------------------------------------------------------AC-------------------------------------TTGCCA-CTGCATCCTAACTA-----GCTTGAGCTCAAGCCCT-------------------AAT--CC--------TAAAACCTG---------------------------------A-----TAA----AAAAAGA----AACACA-------TGAGCAGCCTT-TAACACCTTCG----------------------ATACCTTCATCTCCATTGCCAC-GAAT--TT----AGT-TTTTATGA-TTC-TCTA--------------ATCA--------------------AAAGTG----TTTATTT--TC--GCCTTTGCAGATCATGGCCATTTCACATTGCGGCATCTCATCCACAACCCCCAAATCCAT
droEle1 scf7180000491273:1652485-1652802 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTC-----------------------------------------------------------AT-ACCCATTTTA-CCCATT---TCACCAAT-TTACC--------------------------------------------CA---------------------------------------------TTGCCAATTGCATCCTAACTA-----GCTTGAGCTCAAGCCC---------------------------------------------------CCTAAAAACCCAAATCCCAA-------------AC------------------AAA-------AGAGCAGCGTT-TAACATCTTCG----------------------ATACCTTCATCTCCATTGCCTC-GTCC--TT----AGT-TAATATGG-TTT-AATA--------------ATCA--------------------AATGTC--------TTT--T---GAACTTGCAGATCATGGCCATTTCACATTGCGGCATCTCATCCACAACCCCCAAATCCAT
droRho1 scf7180000778147:5649-5947 - CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------AT-ACCCATTTA--CCCATT---------------------------------------------------------------------GCCATTGC------CA-----------------------TTGCCA-TTGCATCCTAACAA-----GCTTGAGCTCAAGCCCT-------------------AAG--CC-----------------CCA-----------------------A-------------TC------------------AAA-------AGAGCAGCCTT-TAACATCTTCG----------------------ATACCTTCATCTCCATTGCCAC-GACT--TT----AGT-TTACATGG-TTT-AATA--------------ATCT--------------------A-TGTC--------TTT--T---GCCCTTGCAGATCATGGCCATTTCACATTGCGGCATCTCATCCACAACCCCCAAATCCAT
droFic1 scf7180000453949:441516-441812 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTC-----------------------------------------------------------AT-ACCCATTTA----CAC--------------------------------------------------------------------------------------------------------------TGCCATCTGCATCCTAACTATTATAGCTTGAGTTCAAGCCCT-------------------AAA--CC-------------CCC---------------------------G------C------GC------------------AAA-------AGAGCCGCCTT-TAACATCTTCG----------------------ATACCTTCATATCCATTGCCCC-ACAA--CT----GGT-TGA-ATGGTTTC-ACTA--------------ATCA--------------------AAGCTG--------TTT--TTTCGCCCTTGCAGATCATGGCCATTTCGCATTGCGGCATCTCATCCACAACCCCCAAATCCAT
droKik1 scf7180000302643:808686-808968 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TTTT-------------TACCTATTCTCTCA------T---------A--------------------------------------CTCAT-ACCCATA--A---TGCCGCC--------------------------------ATA----AG--------------CCACA---------------------------------------------T---------C-TTCTAACTA---TAGCTTGAGCGCAAGCACT-----------------------------------------------------------------------------------------------------------------------GCC----CACATCTTCG----------------------ATACCTTCATCTCCATTGACCC-TAAT--TC----AGT-TTATTTGA-GTT-ACTA--------------ATTC--------------------G-TT--TT--CTTATTT---TACCCTTTTCCAGATTATGGCCATTTCGCATTGTGGCATCTCATCGACAACGCCAAAATCCAT
droAna3 scaffold_12943:3966568-3966878 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TTAT-------------TACCTATTCTCTT-------------------------------C-------------------ACTCTCTCAT-GCCT-----------------------------------------------------------------------------------------------------------------------------CA-GACCATCCTAACTA-----TCCAGCTCTCAAGCGCT-------------------AAT--AA-----------------AAA-----------------------A-------------TCATAAAAAAAAATCATAAAAATCAATTATAAATCAGCTAT---ATAACTTCA----------------------AAACCTTCATCTTCATTATAAT-AATT--CT----TAATTTAATTGC-TTA-ATTA--------------ATTA--------------------A-TTAA--------TTGTAATA---TCTTGCAGATAATGGCCATTTCACATTGTGGGATCTCCTCGACAACACCCAAGTCCAT
droBip1 scf7180000395973:187298-187580 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCTTTTTT-------------TACCTATTCTC--A------TGC---CTATA--------------------------------------CTCAT-GCCCATTA-----TATC--------------------------------------------------------------------------------------------------------------GCCAAAGCCATCCTAACTA-----GAT------------CT-------------------AAT--CC-----------------CT------------------------AAGACAT--------C-----------------------------------TATT-CAGTAACTTCA----------------------ATACCTCCATCTTCATTAATAT-TACT--T---ATGG-TTTAATAGC-TTA-ATTA--------------ATTA--------------------AATCTT--------TATT-ATA---TCTTGCAGATAATGGCCATTTCACATTGCGGCATCTCCTCGACAACACCCAAATCCAT
dp5 4_group3:3094052-3094340 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TTTT-------------TACCTATT-TCTCA------TACAACACATACACACACATGATCC-----------------------------------------------ACC--------------------------------ACATTCCAG--------------CCACA---------------------------------------------TTGCCA--TATATCCCAAC----------------------------------CGCAAACC---------------------TCTG---------------------------------CCACAACA--------------------------------------------------CA----------------------ACATTTTCATCTCCATTGTCCT-GGCATCC---ATGA-TTGAGCAGC-T---TTTA--------------ATTG--------------------CATT--TT--TTGCTTGT---A-CTCCTTACAGATTATGGCCATTTCCCATTGCGGCATCTCATCGACAACCCCCAAATCCAT
droPer2 scaffold_1:4576852-4577140 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TTTT-------------TACCTATT-TCTCA------TACAACACATACACACACATGATCC-----------------------------------------------ACC--------------------------------ACATTCCAG--------------CCACA---------------------------------------------TTGCCA--TATATCCCAAC----------------------------------CGCAAACC---------------------TCTG---------------------------------CCACAACA--------------------------------------------------CA----------------------ACATTTTCATCTCCATTGTCCT-GGCATCC---ATGA-TTGAGCAGC-T---TTTA--------------ATTG--------------------CATT--TT--TTGCCTGT---A-CTCCTTACAGATTATGGCCATTTCCCATTGCGGCATCTCATCGACAACCCCCAAATCCAT
droWil2 scf2_1100000004521:3618082-3618369 - CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTCCGTAGGGTAGTACCAAATTTCTTATT-------------TACTTACTAT-ACA------TAC---ATATGTACATATATCATTC-------------------ATT--------CATCAAT-----ACATC-----------------GTTCAT--------------------------------------------------------------------------------------------TCGCAT----------------------AAAGC----------------------------------------------------------------------ATAAAAAAC--------C------------------AAA-----------------T-AAATTGCATCA----------------------CCATTTTTAACACAAAAAATTT-GATTTCA---ACTA-TTTAATACA-TATTATTA--------------ACTG--------------------AGTT-T--------TTT--TTCTATTATTGCAGATTATGGCTATATCACATTGTGGCATCTCATCGACAACAAGCAAAAATAT
droVir3 scaffold_12963:8529616-8529908 + dvi_10948 CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTCCGTAGGGTAGTACCAAATTTT-TA-TTA-----------TTATTATTT--GA-----------------------------------------------------------AT-GCCTATCA---TCTGTT---------------------------------------------------------------------CTCATTGTCATTGTCTGTTT-----------------------TA-ATT-TTTCTAAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAAAA------CGATCAAGAGTCAAAA--------------------------------CACTTCATGAACATCGCTTT-ATCG--TTTATCG-AT-----A------------------------GACACAAATTCTGACAG--------GC-T--TT--TCGCTTTT-C---AAACTTCCAGATTATGGCCATTTCACATTGCGGCATCTCATCGACGACCACAAAGTCCAT
droMoj3 scaffold_6500:1141608-1141861 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TA-TTATTGTTATTATTTTCATATTCTCTC-------------------------------C-------------------ATT--------CTCCATT-----CCACT--------GATCTTAAC--------------------------------------------CA----------TCGT---CG------------------------------------------------------T---------------------------------ATG--C------------------------------------------------------------------------------------------------------------TCG----------------------AGTACTTCATGTCCATTGCATT-ACCA--GTTATCG-AT-----A------------------------GACTC-------GCAAGTATAATCGATATTG------------------TTTTTACAGATTATGGCTATATCACATTGCGGCATCTCCTCGACTACCCCAAAAACCAT
droGri2 scaffold_15252:11722420-11722757 + CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TA-T--------------TATTATTATTTA-TAACCATATCACACACACACACACACAAAAACACATATATATATACTCACA----ATCAT-AATCAGTA-----TATC-----------------GCATATCGTTGTCCTTTT-----------------------------CGCGTCTGATTGT---TGTGTGTTTGTGCCATTCGATAAACTCAT---------C-TGCCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCGCTTT-ATC---------GC-TTGCTCAGC-T---TTAACCTCAATTTTACTGACTT-------GCCAG--------CATTTG--------TTTT-A---AACCCAACAGATAATGGCCATTTCACATTGCGGCATCTCATCGACAACCCCAAAATCTAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------AT-GCCCATCTAA-CCCACC--------------------------------------------------------------------------------------------------------------GCCA-CTGCATCCTAACAA-----GCT---------------------------------AAG--CC-----------------CGAGTCCGTTCCGATGCCAAATGCCTA-------------CG------------------AAA-------GGAGCGGTCTC-GAACACCTTCAAT-------------G-C---GATGCCTTCATCTCCATTGCCTTTGAGC--CT----GGATTCGACTGG-TTT-ACTA--------------ACTC--------------------A-CCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCCATTTCACACTGCGGC..........................2211.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--------------------A-CCTG--------TTT--TTG---CCTTGC....................................................2011.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCCACAACGCCCAAA.....1911.00100001000000000000
.................TCACAGCCACAGGTGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
droSec2
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------AT-GCCCATCTAA-CCCACC--------------------------------------------------------------------------------------------------------------GCCA-CTGCATCCTAACAA-----GCT---------------------------------AAG--CC-----------------CGAGTCCGTTCCGACGCCAAATGCCTA-------------CG------------------AAA-------GGAGCGGTCTC-GAACACCTTCGAT-------------G-C---GATGCCTTCATCTCCATTGCCTTTGAGC--CT----GGATTGGACTTA-TTT-ACTA--------------ACTC--------------------A-CCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................AATGCCTA-------------CG------------------AAA-------GGAGCGGTCTC-GA................................................................................................................................................................................................................2611.0010100
................................................................................................................................................................................................................................................................................................................................................................................................GCCAAATGCCTA-------------CG------------------AAA-------GGAGCG........................................................................................................................................................................................................................2311.0010100
dm3
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------ATCGCCCATCTAA-CCCACC--------------------------------------------------------------------------------------------------------------GCCA-CTGCATCCTAACAA-----GCT---------------------------------AAG--CC-----------------C-------------------------A-------------CG------------------AAA------TGGAGTGGTCTC-GAACAACTTCGAT-------------G-CGTCGTTGCCTTCATCTCCATTGCCTC-TAGT--CT----GGATGCGACTGG-TTT-ACTA--------------ACTC--------------------A-CCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACTGG-TTT-ACTA--------------ACTC--------------------A-CCTG--------T....................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CA-CTGCATCCTAACAA-----GCT---------------------------------A...........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGCATCTCATCCACAA.............2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATTTCACACTGCGGCATC.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CACAGCCACAGGTGATTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGCATCTCATCCACAACGCC.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGACTGG-TTT-ACTA--------------ACTC--------------------A-C................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGGCATCTCATCCACA..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACACTGCGGCATCTCATCCACAA.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................CACC--------------------------------------------------------------------------------------------------------------GCCA-CTGCATCCTAACAA-----GC..............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGCCACAGGTGATTGGGGGTGTGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGCCACAGGTGATTGGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTACGTAACAGATCACAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATTTCACACTGCGGCA.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAACGCCCAAATCCA.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGCCACAGGTGATTGGGGGTGTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATTTCACACTGCGGCAT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTGCCTC-TAGT--CT----GGATG.........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GGGGTGTGCGTAGGGTAGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGCGGCATCTCATCC.................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCATGGCCATTTCACAC................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GATTGGGGGTGTGCGTAGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CAGGTGATTGGGGGTGTGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATCATGGCCATTTCACA.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GATTGGGGGTGTGCGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGTGGTCTC-GAACAACTTCGAT-------------........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCACAACGCCCAAATCC..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATTTCACACTGCGGCATCTCA....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CCACAGGTGATTGGGGGTGTGCGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ACTA--------------ACTC--------------------A-CCTG--------TTT--TTG---CCTTG.....................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------G-CGTCGTTGCCTTCATCTCCATTGC..............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCATCCACAACGCCCAAAT....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AGCCACAGGTGATTGGGGGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................TCACAGCCACAGGTGATGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTT----ATGCCCAT------------------------------------------------CTCAT-GCCCATCTAA-CCCACC----------------------------------TGCATCCCAGCCACTGCATCCA-----------------------------------------------------AGCCA-CTGCATCCTAACAA-----GCT---------------------------------AAG--CCCCGACTCCC--------------------GATGC-------------CAG-------CG------------------AAG-------CG-----------AGCACCTACG----------------------ATGCCTTCATCTCCATTGCCTC-CAGC--CT----GGACTACAATGG-TGT-ACTA--------------ACTG--------------------AACCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAATCCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................TTGGGGGTGTGCGTAGGGTAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000020
.......ACGTAACAGATCACAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTA--------------ACTG--------------------AACCTG--------TTT--TTG---CCTT......................................................2411.0010100000
..ATATTACGTAACAGATCACAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
...............................GATTGGGGGTGTGCGTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000
droYak3
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------AT-GCCCATCTAA-CCCACC-----------------GCCCAC-----------TGC-------CCACTGCATCTAAGCCACTGCCACTGTCACTGC------CA-----------------------CTGCCA-CTGCATCCTAACAA-----GCT---------------------------------AAAACTCCCGACTCCC--------------------GATGC-------------C---------------------------------------------------TGGCACCTTCGATCGATGCCTTCGATTCCATCGATGCCTTCATCTCCATTGCCGC-CAGC--CT--GC-GATTGGAGTGC-TTT-ACTA--------------ACTC--------------------AACCTG--------TTT--TTG---CCTTGCAGATCATGGCCATTTCACACTGCGGCATCTCATCCACAACGCCCAAGTCCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTGCGGCATCTCATC..................2111.00101000000000
.....................AGCCACAGGTGATTGGGGGTGTGCGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.....................................................................................................................................................................................................C-----------TGC-------CCACTGCATCTAAGCCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTT-----------------T--------------------------------------CTCAT-ACCCATTTAAACCCAC--------------------------------------------------------------------------------------------------------------TGCCA-CTGCATCCTAACT----TAGCTTGATCTCAAGCCATATAACCTCTTTGCA---C---------------------TCTG---------------------------------A-----AAA----------------AAATA------TGATACAGCCTTTTAACACCTTCG----------------------ATACCTTCATCTCCATTGCCTT-GTAT--TT----GGT-TTCTATGG-TTT-TCTA--------------ATTA--------------------AATATCTTCTT---TTT--TTGTGCCCTTGCAGATCATGGCTATTTCACATTGCGGCATCTCATCCACAACACCCAAAACCATSizeHit CountTotal NormTotal
No Reads
droBia1
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTC-----------------------------------------------------------AT-GCCCATCTAAACCC----------------------------------------------------------------CT---------------------------------------------TTGCCA-CTGCATCCTAACTA-----GCT----------------------------AACCTAAG--CC--------------CTG---------------------------------G-----CAC----A-------------ACA------GGGACCAGCCTT-TAACACCTTCG----------------------ATACCTTCATCTCCATTGCCTC-GCCT--TC----AGT-TTTTATAACATT-TCTA--------------ATCA--------------------AGAGTG----T---TTT--TTACCCCCTTCCAGATCATGGCCATCTCACACTGCGGCATCTCATCCACAACCCCCAAAACCATSizeHit CountTotal NormTotal
No Reads
droTak1
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTC-----------------------------------------------------------ATCCCCCATCTAAATCCATT---------------------------------------------------------------------AC-------------------------------------TTGCCA-CTGCATCCTAACTA-----GCTTGAGCTCAAGCCCT-------------------AAT--CC--------TAAAACCTG---------------------------------A-----TAA----AAAAAGA----AACACA-------TGAGCAGCCTT-TAACACCTTCG----------------------ATACCTTCATCTCCATTGCCAC-GAAT--TT----AGT-TTTTATGA-TTC-TCTA--------------ATCA--------------------AAAGTG----TTTATTT--TC--GCCTTTGCAGATCATGGCCATTTCACATTGCGGCATCTCATCCACAACCCCCAAATCCATSizeHit CountTotal NormTotal
No Reads
droEle1
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTC-----------------------------------------------------------AT-ACCCATTTTA-CCCATT---TCACCAAT-TTACC--------------------------------------------CA---------------------------------------------TTGCCAATTGCATCCTAACTA-----GCTTGAGCTCAAGCCC---------------------------------------------------CCTAAAAACCCAAATCCCAA-------------AC------------------AAA-------AGAGCAGCGTT-TAACATCTTCG----------------------ATACCTTCATCTCCATTGCCTC-GTCC--TT----AGT-TAATATGG-TTT-AATA--------------ATCA--------------------AATGTC--------TTT--T---GAACTTGCAGATCATGGCCATTTCACATTGCGGCATCTCATCCACAACCCCCAAATCCATSizeHit CountTotal NormTotal
No Reads
droRho1
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT---------------TACCTATTCTCTC-----------------------------------------------------------AT-ACCCATTTA--CCCATT---------------------------------------------------------------------GCCATTGC------CA-----------------------TTGCCA-TTGCATCCTAACAA-----GCTTGAGCTCAAGCCCT-------------------AAG--CC-----------------CCA-----------------------A-------------TC------------------AAA-------AGAGCAGCCTT-TAACATCTTCG----------------------ATACCTTCATCTCCATTGCCAC-GACT--TT----AGT-TTACATGG-TTT-AATA--------------ATCT--------------------A-TGTC--------TTT--T---GCCCTTGCAGATCATGGCCATTTCACATTGCGGCATCTCATCCACAACCCCCAAATCCATSizeHit CountTotal NormTotal
No Reads
droFic1
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TT-T-------------TACCTATTCTCTC-----------------------------------------------------------AT-ACCCATTTA----CAC--------------------------------------------------------------------------------------------------------------TGCCATCTGCATCCTAACTATTATAGCTTGAGTTCAAGCCCT-------------------AAA--CC-------------CCC---------------------------G------C------GC------------------AAA-------AGAGCCGCCTT-TAACATCTTCG----------------------ATACCTTCATATCCATTGCCCC-ACAA--CT----GGT-TGA-ATGGTTTC-ACTA--------------ATCA--------------------AAGCTG--------TTT--TTTCGCCCTTGCAGATCATGGCCATTTCGCATTGCGGCATCTCATCCACAACCCCCAAATCCATSizeHit CountTotal NormTotal
No Reads
droKik1
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TTTT-------------TACCTATTCTCTCA------T---------A--------------------------------------CTCAT-ACCCATA--A---TGCCGCC--------------------------------ATA----AG--------------CCACA---------------------------------------------T---------C-TTCTAACTA---TAGCTTGAGCGCAAGCACT-----------------------------------------------------------------------------------------------------------------------GCC----CACATCTTCG----------------------ATACCTTCATCTCCATTGACCC-TAAT--TC----AGT-TTATTTGA-GTT-ACTA--------------ATTC--------------------G-TT--TT--CTTATTT---TACCCTTTTCCAGATTATGGCCATTTCGCATTGTGGCATCTCATCGACAACGCCAAAATCCATSizeHit CountTotal NormTotal
No Reads
droAna3
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TTAT-------------TACCTATTCTCTT-------------------------------C-------------------ACTCTCTCAT-GCCT-----------------------------------------------------------------------------------------------------------------------------CA-GACCATCCTAACTA-----TCCAGCTCTCAAGCGCT-------------------AAT--AA-----------------AAA-----------------------A-------------TCATAAAAAAAAATCATAAAAATCAATTATAAATCAGCTAT---ATAACTTCA----------------------AAACCTTCATCTTCATTATAAT-AATT--CT----TAATTTAATTGC-TTA-ATTA--------------ATTA--------------------A-TTAA--------TTGTAATA---TCTTGCAGATAATGGCCATTTCACATTGTGGGATCTCCTCGACAACACCCAAGTCCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................GCCACAGGTGATTGGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGACAACACCCAAGTCC..2011.001100000
.............................GTGATTGGGGGTGTGCGTAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGATCTCCTCGACAACACCC........2511.001100000
........CGTAACAGATCACAGCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
......TACGTAACAGATCACAGCCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droBip1
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCTTTTTT-------------TACCTATTCTC--A------TGC---CTATA--------------------------------------CTCAT-GCCCATTA-----TATC--------------------------------------------------------------------------------------------------------------GCCAAAGCCATCCTAACTA-----GAT------------CT-------------------AAT--CC-----------------CT------------------------AAGACAT--------C-----------------------------------TATT-CAGTAACTTCA----------------------ATACCTCCATCTTCATTAATAT-TACT--T---ATGG-TTTAATAGC-TTA-ATTA--------------ATTA--------------------AATCTT--------TATT-ATA---TCTTGCAGATAATGGCCATTTCACATTGCGGCATCTCCTCGACAACACCCAAATCCATSizeHit CountTotal NormTotal
No Reads
dp5
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TTTT-------------TACCTATT-TCTCA------TACAACACATACACACACATGATCC-----------------------------------------------ACC--------------------------------ACATTCCAG--------------CCACA---------------------------------------------TTGCCA--TATATCCCAAC----------------------------------CGCAAACC---------------------TCTG---------------------------------CCACAACA--------------------------------------------------CA----------------------ACATTTTCATCTCCATTGTCCT-GGCATCC---ATGA-TTGAGCAGC-T---TTTA--------------ATTG--------------------CATT--TT--TTGCTTGT---A-CTCCTTACAGATTATGGCCATTTCCCATTGCGGCATCTCATCGACAACCCCCAAATCCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCATCGACAACCCCCAAATCC..2411.0010100000000
....................CAGCCACAGGTGATTGGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCCATTGCGGCATCTC.....................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTATGGCCATTTCCCATTGCGGCATC.......................2811.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCATTTCCCATTGCGG...........................2011.0010100000000
.........GTAACAGATCACAGCCACAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATTTCCCATTGCGGC..........................1911.0010100000000
droPer2
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAACTTCT-TTTT-------------TACCTATT-TCTCA------TACAACACATACACACACATGATCC-----------------------------------------------ACC--------------------------------ACATTCCAG--------------CCACA---------------------------------------------TTGCCA--TATATCCCAAC----------------------------------CGCAAACC---------------------TCTG---------------------------------CCACAACA--------------------------------------------------CA----------------------ACATTTTCATCTCCATTGTCCT-GGCATCC---ATGA-TTGAGCAGC-T---TTTA--------------ATTG--------------------CATT--TT--TTGCCTGT---A-CTCCTTACAGATTATGGCCATTTCCCATTGCGGCATCTCATCGACAACCCCCAAATCCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................GGTGATTGGGGGTGTGCGTAGGGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.................TCACAGCCACAGGTGATTGGGGGTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
droWil2
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTCCGTAGGGTAGTACCAAATTTCTTATT-------------TACTTACTAT-ACA------TAC---ATATGTACATATATCATTC-------------------ATT--------CATCAAT-----ACATC-----------------GTTCAT--------------------------------------------------------------------------------------------TCGCAT----------------------AAAGC----------------------------------------------------------------------ATAAAAAAC--------C------------------AAA-----------------T-AAATTGCATCA----------------------CCATTTTTAACACAAAAAATTT-GATTTCA---ACTA-TTTAATACA-TATTATTA--------------ACTG--------------------AGTT-T--------TTT--TTCTATTATTGCAGATTATGGCTATATCACATTGTGGCATCTCATCGACAACAAGCAAAAATATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACATTGTGGCATCTCATCGACA..............2512.00220000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCATCTCATCGACA..............1811.00101000
..................CACAGCCACAGGTGATTGGGGGTGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..............AGATCACAGCCACAGGTGATTGGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
droVir3
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTCCGTAGGGTAGTACCAAATTTT-TA-TTA-----------TTATTATTT--GA-----------------------------------------------------------AT-GCCTATCA---TCTGTT---------------------------------------------------------------------CTCATTGTCATTGTCTGTTT-----------------------TA-ATT-TTTCTAAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAAAA------CGATCAAGAGTCAAAA--------------------------------CACTTCATGAACATCGCTTT-ATCG--TTTATCG-AT-----A------------------------GACACAAATTCTGACAG--------GC-T--TT--TCGCTTTT-C---AAACTTCCAGATTATGGCCATTTCACATTGCGGCATCTCATCGACGACCACAAAGTCCATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCGGCATCTCATCGACGACC...........2412.002020000000000000000000000000000000000000000000000000000000000000
......................GCCACAGGTGATTGGGGGTGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000100000000000000000000000000000000000000000000000000000
.......................CCACAGGTGATTGGGGGTGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.........GTAACAGATCACAGCCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCGGCATCTCATCGA................1911.001000000000000000000000000000000000100000000000000000000000000000
.GATATTACGTAACAGATCACAGCCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
..ATATTACGTAACAGATCACAGCCACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
..................CACAGCCACAGGTGATTGGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..................CACAGCCACAGGTGATTGGGGGTGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................AAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAA.......................................................................................................................................................................................................................................21200.408000000000000000008000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TCTAAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAAA......................................................................................................................................................................................................................................2740.251001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAAAA------...............................................................................................................................................................................................................................25200.255000000000000000000500000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAAAA------C..............................................................................................................................................................................................................................25200.204003000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAA.......................................................................................................................................................................................................................................23200.153000000000000000000000000000000000000300000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TAAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAA................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................T-TTTCTAAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----A.....................................................................................................................................................................................................................................................19160.061001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TAAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAAAA------...............................................................................................................................................................................................................................26200.051000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CTAAAAA-----AAA---------------------------------AAA--------------------------------------------------------------A----AAAAAAA----AAAA.......................................................................................................................................................................................................................................25200.051000000000000000001000000000000000000000000000000000000000000000
droMoj3
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TA-TTATTGTTATTATTTTCATATTCTCTC-------------------------------C-------------------ATT--------CTCCATT-----CCACT--------GATCTTAAC--------------------------------------------CA----------TCGT---CG------------------------------------------------------T---------------------------------ATG--C------------------------------------------------------------------------------------------------------------TCG----------------------AGTACTTCATGTCCATTGCATT-ACCA--GTTATCG-AT-----A------------------------GACTC-------GCAAGTATAATCGATATTG------------------TTTTTACAGATTATGGCTATATCACATTGCGGCATCTCCTCGACTACCCCAAAAACCATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGCGGCATCTCCTCGA................1911.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCGGCATCTCCTCGACTACCC..........2711.001100000
.........................ACAGGTGATTGGGGGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GTTATCG-AT-----A------------------------GACTC-------GCAAGTATAA......................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACATTGCGGCATCTCCTCGAC...............2211.001000001
......................GCCACAGGTGATTGGGGGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droGri2
CGATATTACGTAACAGATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGGTAGTACCAAATTCT-TA-T--------------TATTATTATTTA-TAACCATATCACACACACACACACACAAAAACACATATATATATACTCACA----ATCAT-AATCAGTA-----TATC-----------------GCATATCGTTGTCCTTTT-----------------------------CGCGTCTGATTGT---TGTGTGTTTGTGCCATTCGATAAACTCAT---------C-TGCCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATCGCTTT-ATC---------GC-TTGCTCAGC-T---TTAACCTCAATTTTACTGACTT-------GCCAG--------CATTTG--------TTTT-A---AACCCAACAGATAATGGCCATTTCACATTGCGGCATCTCATCGACAACCCCAAAATCTATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................ACAGCCACAGGTGATTGGGGGTGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101

Generated: 05/19/2015 at 05:46 AM