ID:

dsi_20167

 Coordinate:

2r:5581236-5581298 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5580816_5581235_+]; CDS [2r_5580816_5581235_+]; CDS [2r_5581299_5581500_+]; exon [2r_5581299_5581500_+]; intron [2r_5581236_5581298_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
GGACATGATCACCATGATGCTTTCCATGCTGGAAGGAAACGTTGTTAACGGTATGGGAACTGGCATATCTGGATGACTAATGCAGACTAATATCCGAATATCCGAATTAACAGGCACTATTGGCAAGCAGATGGTGGACACGCTGGTGGAGTCGGCCAGCAAT
**************************************************...((((...(((.(((((((.((.....)).))))....))))))....)))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 O001
Testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................CTGGTCGAGTCGGCCTGC... 18 2 2 10.50 21 21 0 0 0 0 0
............................................................................................................................................CACTGGTCGAGTCGGCCTGC... 20 3 4 4.50 18 18 0 0 0 0 0
..............................................................................................................................................CTGGTCGAGTCGGCC...... 15 1 2 2.00 4 4 0 0 0 0 0
.............................................................................................................................................GCTGGTCGAGTCGGCCTG.... 18 2 1 2.00 2 2 0 0 0 0 0
................................................CGGTATGGGAACCGGC................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................ATTGGCAAGCAGATGGTGGACAC...................... 23 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................CACTGGTCGAGTCGGCC...... 17 2 12 0.67 8 8 0 0 0 0 0
..............................................................................................................................................CTGGTCGAGTCGGCCT..... 16 2 20 0.55 11 11 0 0 0 0 0
...........................................................................................................................................TCGCTGGTCGAGTCGGCCTGC... 21 3 2 0.50 1 1 0 0 0 0 0
...............................................................................................................................................TGGTCGAGTCGGCCTGC... 17 2 5 0.40 2 2 0 0 0 0 0
..............................................................................................................................................CTGGTCGAGTCGGCCTG.... 17 2 5 0.40 2 2 0 0 0 0 0
...........................................................................................................................................TCGCTGGTCGAGTCGGCC...... 18 2 6 0.17 1 1 0 0 0 0 0
............................................................................................................................................CTCTGGTCGAGTCGGCC...... 17 2 7 0.14 1 1 0 0 0 0 0
...............................................................................................................................................TGGTCGAGTCGGCCTG.... 16 2 20 0.10 2 1 0 0 1 0 0
............................................GTAACGATCTGGGAACTGG.................................................................................................... 19 3 20 0.10 2 0 0 1 0 1 0
.............................................TAACGATCTGGGAACTGTC................................................................................................... 19 3 12 0.08 1 0 0 1 0 0 0
................................................................................................................................AGATGGCGGACACGATGG................. 18 2 13 0.08 1 1 0 0 0 0 0
............................................................................................................................................CTCTGGTGGAGTCGTCC...... 17 2 13 0.08 1 0 0 0 1 0 0
...............................................................................................................................CAGATGGTGGACGCGGT................... 17 2 15 0.07 1 1 0 0 0 0 0
................................................................................................................................................GGTCGAGTCGGCCTGC... 16 2 20 0.05 1 1 0 0 0 0 0
...................................................TATGGGAACCAGCATAT............................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0
.......................................................................................................................................GGAAACTCTGGTGGAGT........... 17 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CCTGTACTAGTGGTACTACGAAAGGTACGACCTTCCTTTGCAACAATTGCCATACCCTTGACCGTATAGACCTACTGATTACGTCTGATTATAGGCTTATAGGCTTAATTGTCCGTGATAACCGTTCGTCTACCACCTGTGCGACCACCTCAGCCGGTCGTTA
**************************************************...((((...(((.(((((((.((.....)).))))....))))))....)))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
.................................................................................CGTCTGATGCTAGGCT.................................................................. 16 2 20 0.05 1 1

Generated: 04/23/2015 at 05:35 PM