ID:

dsi_20147

 Coordinate:

2r:10203465-10203614 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.2 -17.1 -17.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TTATA)nSimple_repeatSimple_repeat+

Sense Strand Reads

AAGCAAAAGTAGAGTCTAATCGAGCATTCCGTAATTTTAAAATAATAGATTAAAAAAACGTTCGGACTTACAGAAAAATTTAAAAACATATAATATTATATATTATATTATATTATAATATCGAAATTATTTTGTTTTTTTTTTATCTGAAGTTATTTTTATAATACACATACTTTCAATTTAAATTTTTTTATTTCAAGATAAAGTTTCCTCAATTAAGAGATTCGGGAGTCTACGAATGTCAAGTATC
********************************************************........(((((.((((.(((...(((((((.(((((.((..((((((((......))))))))..)))))))..)))))))..))).)))))))))................******************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
.................................................TTAAAAAAACGTTCGGACTTACAGAAAAA............................................................................................................................................................................ 29 0 1 3.00 3 3 0 0 0 0 0 0
........................................................AACGTTCGGACTTACAGAAAAATTT......................................................................................................................................................................... 25 0 1 2.00 2 0 1 1 0 0 0 0
.................................................................................................................................................TCTGAAGTTATTTTTATAATACACA................................................................................ 25 0 1 2.00 2 0 0 0 0 2 0 0
..GCAAAAGTAGAGTCTAATCGAGCATT.............................................................................................................................................................................................................................. 26 0 1 2.00 2 0 0 0 2 0 0 0
......................................................AAAACGTTCGGACTTACAGAAAAATT.......................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
..........................................TAATAGATTAAAAAAACGTTCGGACT...................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0
.......AGTAGAGTCTAATCGAGCATTCCGTAA........................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0
.................................................TTAAAAAAACGTTCGGACTTACAGAAA.............................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................TTTCAAGATAAAGTTTCCTCAATTAAGAGA........................... 30 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................CGGGAATCTACGAATGTCAAGTATC 25 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................TTATCTGAAGTTATTTTTATAATACACA................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0
..................................................TAAAAAAACGTTCGGACTTACAGAA............................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................TTCAAGATAAAGTTTCCTCAATTAAGAGA........................... 29 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TAAGAGATTCGGGAGTCTACGAATGT........ 26 0 1 1.00 1 0 0 0 0 0 1 0
............................CCGTAATTTTAAAATAATAGATTAAAAA.................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
....................................................AAAAAACGTTCGGACTTACAGAAAAATT.......................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................TTCAAGATAAAGTTTCCTCAATTAAGA............................. 27 0 1 1.00 1 1 0 0 0 0 0 0
........................................................AACGTTCGGACTTACAGAAAAATT.......................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0
..........................................TAATAGATTAAAAAAACGTTCGGACA...................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0
...................................................AAAAAAACGTTCGGACTTACAGAAAAATT.......................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTCGGGAATCTACGAATGTCAAGTA.. 25 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................AAAAACGTTCGGACTTACAGAAAAATT.......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.....................................TAAAATAATAGATTAAAAAAACGTT............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................TTTTATCTGAAGTTATTTTTATAATA.................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................TTTATTTCAAGATAAAGTTTCCTCAAT.................................. 27 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................CAATTAAGAGATTCGGGAGTCTACGAA........... 27 0 1 1.00 1 0 0 0 0 0 1 0
.............................................TAGATTAAAAAAACGTTCGGACTTACAGAA............................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................TATCTGAAGTTATTTTTATAATACACA................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0
......................................................AAAACGTTCGGACTTACAGAAAAATTT......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.............................................TAGATTAAAAAAACGTTCGGACTTACAGA................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 1 0 0
.......................GCATTCCGTAATTTTAAAATAATAGA......................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................TTAAAGTTTTTTATTTCACGTTAAA............................................. 25 3 2 0.50 1 0 0 0 0 1 0 0
.............................................TAGATTAAAAAAGCGT............................................................................................................................................................................................. 16 1 4 0.25 1 0 0 0 0 0 1 0
...................................................................................................................TACTGTGGAAATTATTTTGTT.................................................................................................................. 21 3 20 0.15 3 0 2 0 0 1 0 0
....................................................................................................................................TGTTGTTGTTTTATCCGAAGTT................................................................................................ 22 3 9 0.11 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................AAGAGATTTGGGAGT.................. 15 1 11 0.09 1 0 0 0 0 1 0 0
...............................................................................................................................TATTTTGTTTTTTTTTTATTTTAAGA................................................................................................. 26 3 15 0.07 1 0 0 1 0 0 0 0
.....................................................TAAAACGTTCGGAGTTAGA.................................................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 1
...............................................................................................TTGTCTATTATCTTATATTATA..................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

TTCGTTTTCATCTCAGATTAGCTCGTAAGGCATTAAAATTTTATTATCTAATTTTTTTGCAAGCCTGAATGTCTTTTTAAATTTTTGTATATTATAATATATAATATAATATAATATTATAGCTTTAATAAAACAAAAAAAAAATAGACTTCAATAAAAATATTATGTGTATGAAAGTTAAATTTAAAAAAATAAAGTTCTATTTCAAAGGAGTTAATTCTCTAAGCCCTCAGATGCTTACAGTTCATAG
********************************************************************************........(((((.((((.(((...(((((((.(((((.((..((((((((......))))))))..)))))))..)))))))..))).)))))))))................******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
............................................................AAGCCTGAATGTCTTTTTAAATTTTTGT.................................................................................................................................................................. 28 0 1 2.00 2 0 2 0 0 0 0 0
......TTCATCTCAGATTAGCTCGTAAGGCAT......................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................ATGGACTTCAATAAAAAAATGAT.................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0
.............................................................AGCCTGAATGTCTTTTTAAATTTTTGT.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................AGCCTGAATGTCTTTTTAAATTTTTGTAT................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0
...................AGCTCGTAAGGCATTAAAATTTTATTAT........................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................AAAAAAAACTAGACTTCA................................................................................................. 18 1 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................TAAGCCCTTAGATGCTTACAGTTCAT.. 26 1 1 1.00 1 0 0 0 1 0 0 0
..................TAGCTCGTAAGGCATTAAAATTTTAT.............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................CCTTAGATGCTTACAGTTCATA. 22 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................AAGCTTTAATAAAACAAAAAAAAAAT......................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0
........................................................................................................................................AAAAAAAATAGACTTC.................................................................................................. 16 0 1 1.00 1 0 0 1 0 0 0 0
..................................................ATTTTTTTGCAAGCCTGAATGTCTTTT............................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................GTTCTATTTCAAAGGAGT.................................... 18 0 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................................................................AAAAAAATAGACGTCAATTAGA........................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................CCATCAGATGCTTACT........ 16 2 13 0.08 1 0 0 0 1 0 0 0
........................................................................................................................................AAAAAAACTAGACTTCAT................................................................................................ 18 2 14 0.07 1 0 1 0 0 0 0 0
.........CTCTCAGATTGGCTCG................................................................................................................................................................................................................................. 16 2 17 0.06 1 1 0 0 0 0 0 0
......................................................................................................................................AAAAAAAAATTAGACTT................................................................................................... 17 1 18 0.06 1 0 0 1 0 0 0 0
.........................................................................................................................................AAAAAACTAGACTTC.................................................................................................. 15 1 19 0.05 1 0 0 1 0 0 0 0
..............................................................................................................................AATAAAACCAAAAAAAAAGAGAAT.................................................................................................... 24 3 20 0.05 1 0 0 0 0 1 0 0
...........................................................................................................................................................................................AAAAAGAAAGTTCTAT............................................... 16 1 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10203415-10203664 - dsi_20147 AAGCAAAAGTA----------------------GAGTCTAATCGAGCATTCCGTA-------ATTTTAAAATAATAG----------------------------ATTAAAAAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------TAAA---------------------------------------------AACATATA--------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATTATA--------TATTATAT-----------------------TATATTATAA--------------------------------------------------------------------------------TATCGAAATTATTTTGTTTTTTTTTTAT------------CTGAAGTTATTTTTA-T-----AAT---------------------------ACACATACTTTCAATTTAA-ATTTTT------TTATTTCAA---------------G-AT------AAAG-TTTCCTCAATTAAGAGATTCGGG------------------------AGTCTACGAATGT--CAA-GTATC
droSec2 scaffold_57:244627-244876 + AAGCAAAAGTA----------------------GAGTCTAATCGAGCATTCCGTA-------ATTTTAAAATAATAG----------------------------ATTAAAAAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------TAAA---------------------------------------------AAAATATA--------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATTATA--------TATTATAT-----------------------TATATTATAA--------------------------------------------------------------------------------TATCGAAATTAGTTTGTTTTTGTTTGAT------------CTGAAGTTATTTTTA-T-----AAT---------------------------ACACATACTTTAAATTAAA-ATTTTT------TTATTTCAA---------------G-AT------AAAG-TTTCCACAATTAAGAGATTCGGG------------------------AGTCTACGAATGT--CAA-GTATC
dm3 chr3L:23334416-23334598 - AGCACTCTTAGTTTTGGAATAAT------------------------CCCTCACAGGCGAA---------------------------------------------------------------------------------------------------------------TAAAACTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGCAAGATTCAATAT--ATTATA--------TATTATATTATATTATATTATATTATATTATTATATTATATTATAT-------------------------------------------------------------------------------------------------------------------TATATTATATTATTA-TATTATAT-------------------------------TATATTATTATATTAT-ATTATT------ATATTATAT---------------T-A---------------------------------------------------------------------------TA-ATATT
droEre2 scaffold_4929:23548869-23549080 - AACTTTA---------GAATGATCGCATAGAAGGTA-----------------------------------------------------------------------GAAAGAGACGTTCGGAC-TTATAGTATAATT---------------------------------------------------CAAAT---ATG--------------AAAAGCATTAGT--------------AATATA--------------------------------------------------------------------------------------------------------------------------------------------------------AC--TTTATA---------------------------------------------------------------------------------------------------------------------------------TATCCAAATGAAAATGCTAT--TTTGAA------------CTGTAA-TACTTTTA-T-----AAT---------------------------A--------ATAAATATAC-ATTTTT------ACATTTCAA---------------G-AT------AAAG-TTTCCTCAACTAAGAGACTCGGG------------------------AATTTACGAATGT--CAA-GTATC
droYak3 v2_chrUn_004:598351-598532 + AAATTTCAAA-------------------------------GCA---------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTCTTTATTATTA-----------GG--------------AATA--TATGTAAGTT--TATATATCCA------------------------AATTACCATCAGCATTTTT-----------------------------------AAGCAAAA-----------------------------TTTTTATTTCTATA---ATTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATA--ATAATTAAAA-ATTTGT------ACATTTCAA---------------G-AT------CAAG-TTTTCTCAACTAAGAGATTCGGG------------------------AATCTACGAATGT--CAA-GTATC
droEug1 scf7180000409155:73061-73267 - AAGTGAAAATG----------------------AAAAAAAAGAAA--ATATTGTA-------ATATTGATATCCAAA----------------------------TCA---------------------------------------------------------------------------------------------------------------------------------AAAAATATATATGTACCTA--TATCAATTGA------------------------AACCATCATCACCGATTTGAAAAAAATGCATCGAGCATTATTATGGATATATA-----------------------------------------------------AA--GCTAAA--------C------------------------------------ATTT--------------------------------------------------------------------------------AATCAAAATCATGCAATTTTTTTTTCAT------------AAAAATCTATATTTA-C-----TGT---------------------------ATATTTACTCGC------------------------------------------------------------------------------------------------------------------------------GATT
droBia1 scf7180000302026:10278-10484 + AATAATG---------AAATAATTATAAAAAA----------------------------------------ATTAT----------------------------ATTAATTAAAAAAT---------------TATA---------------------------------------------------TTAA---------------------------------------------TAATTATA--------------------------------------------------------------------------------------------------------------------------------------------------------TT--AAAATA--------TATTATAT-----------------------TATA---AAA--------------------------------------------------------------------------------AAATAAAACAACTTCCCTTCTTGTT-AT------------TTATAGTTCTATT--A-AATATAAT--A-------------------------TAT--A-------------------ATTTTAAT--------TTTTAT----------A-------AAAC-TTAAAACAAATAA-AAACTCTATAGTCTACAGCGCCATCAAG---------------CGC--AATCTAATC
droTak1 scf7180000415438:425618-425828 + TAGTCAGAGCA----------------------GTT-----------------------------------------------------------------------GCAAATGTTGTTTGGTA-TTATAAAATAATTTTTAACAGAATTATTAACTA----------------ATTTTGTAT---TAT--------ATT----------------------------------ATATATTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------TA--TATATA--------TATTATAT-----------------------TATATTATATTA------------TTATATCCTTAACTTGATAAAT-----------TGATA-----------------------------------------------TTA----------------------------------T-----AA----TAATTATAATTAAATAGTTATAATATA--------------------------------------------------------------------------------ACTACTTTGGA------------------------TTCTTAACAAGGT--TTA-TTCAA
droEle1 scf7180000491087:258304-258543 - AAAGTATATTA----------------------AAA-----TCAAGCAAT------------------------------------------------------------------TCCCAGTAATTATGTA---------------------------------------------------AATATT--------AT-------------------AGTCT--------------CAATGAACTGTTATTTCCAATAGCTACTTAAAAAGCTTAAGATTCAATGAAATTTAGTAACGATCATCATATGT-----------------------------------AAAGATGA-----------------------------TT---------------------------------------------------------------TTTATAAGA--------------------------------------------------------------------------------ACTCAAAATTGTTTCGTTTTTTTTTGTT------------TAGAAATTAT-TTTG-T-----AAT---------------------------ATATGTTC--TCGA-------------------C--------TTCCTT----------TT------TAG-----------------------TA------------------------AATATAGTTGTTTCAAAA-TAAGG
droRho1 scf7180000780019:66673-66863 + TAATTTGAATA----------------------AAA------------------------------------ATCAA----------------------------ATTAATAAAACATTTGGGT-TAAGGGTTAGATT-AAAGCGAGGTCTTAAAATA----------------TATTTG---AATATT--------ATG--------------AAAAATTCT--------------CATAATATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTCCCTTCTAC------------TTAAAGACATTTTTT-G-----GAC---------------------------TCGGATTTTTTCAGCTTAA-A-------------------------------------TTTGAGTTTCTTTTTTCCTCAAATAAA--------------------------------------------------A-AGTTC
droFic1 scf7180000449205:41794-41971 + TTTAAAT---------AAATGAATATTAAAAA----------------------------------------TAA---------------------------------------------AGAT-TTAAATAAATACT---------------------------------------------------TATA---------------------------------------------TAATTATA--------------------------------------------------------------------------------------------------------------------------------------------------------TT--ATATTA--------TATATAAT-----------------------TATATTATATTATAT----------------------TTAATATAT----------------------------------------------------------CTATATTATATTAT------------ATATAATTATATT----------A----TATGTATTA----------------TAG--A-------------------ATAA--------TAAAAATATTTAAATAAATATT---------------------------------------------------------------TATTATTG--AAA-TTAAA
droKik1 scf7180000302258:261623-261832 + AAATAGA-TTA----------------------GATTTTAATTTTGCAA-----A-------AATTAAAAAAAATATATTAGATTTTATTTTACAATTACAAGAATTTAAAAAAAAATTAAAAA-ATATATTATATTT--------------------TAATTTAGAATTAAAAGAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAATTTT-A-----AAT---------------------------ATATAAGATTTTAATTAAA--------------------------------------------------A-TTGTTTAAAATAATATAT------------AACGTTGTTAAAAACTTAGTTTAAAAATG--------TAAA
droAna3 scaffold_13337:12012693-12012910 - AATAAGT---------GGAATA-----------GAATCCAATTGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGAATGAATTGAATCTTGGTATCAAGATGTTTGGAAACTCTTCCTTAAATTTCCAGAACTTTGAGATAAAATTTATAATATTC--TTTATTATA--------TAGTATTC-----------------------TTGATTACTT--------------------------------------------------------------------------------TTTTATATT-----------------GC------------TTATCTTTATT-----T-----AA----TATTCATAATTTAATATTCAAAATACAGATTG--TTCATAGAA-TTCTT---------------------------------------------------------------------------------------------------------T--TTA-TTCCA
droBip1 scf7180000396412:248353-248563 + AAATTAAATTA----------------------AAATTAAATTAAATTAAATTAA-------ATTAAATTAAATTAA----------------------------ATTAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTAAATTAAATTAAA-----A-----TTAAATTAAAATTAAATTAAA-AATAAAGTTATAATTTAATTTTAATGATTATTTAAATTATTATTTTAATGATTTTT------------TATAATGTATATATA-T-----ATT---------------------------ATATATATATTTTGTATAA-ATTTAT------TTATAA--A---------------A-A----------------------------------------------------------------------------C-AAAGT
dp5 XL_group1a:1874079-1874242 + GAGCACT---------CGGCCATGGCATAATG----------------------------------------AAGTG----------------------------GATAAAATTATGTCATTAC-TTTCATTAAAAAT---------------------------------------------------TAAA---------------------------------------------AAAATATA--------------------------------------------------------------------------------------------------------------------------------------------------------TA--TCTGTA--------TATAAAAT-----------------------TGAATTATA---------------------------------------------------------------------------------------CATTATTTCGATGTGTTTTTAT------------TGTTAGCTTTTTTTT-T-----TAT---------------------------TTAGCTTATTCGAG--------------------------------------------CT------TATT-----------------------------------------------------------------T-TTTCT
droPer2 scaffold_51:492848-493046 - TTTTAAAATA---------------------------------------------------------------AAAA----------------------------TTTGATATGATATTTGAAT-TTTTATTTTATTT--------------------TTAACTTGTATAATCAAAATTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTTTATGACTTCA---TTTTT---------------------------------------------------A--------------------------------------------------------------------------------TATAATAATTATTTTTTAATTTTATAAT------------TTAAATTAATTTTAA-T-----AAT---------------------------T----TAATCAAAATTTAA-AATAAA------AAATTACAA---------------A-TA------AAAG-TATATTAAATTT-----------------------------------------------T--GAA-ATTTG
droWil2 scf2_1100000010001:296-452 - AATCTTGGAT-------------------------------------------------------------------------------------------------GGAAATGGCTTGTGGTA-TTATACAAAAATT---------------------------------------------------TTAATATTATGTGGTTATTTTTTA-------------------------------------------------------------------------------------------------T-----------------------------------AAAAAT----------------------------------------------------------------------AT-----------------------TTTTTCAAAA--------------------------------------------------------------------------------TTTCGGAATTATTTTCTCTTCTTTTTTT------------TTCAA-TATTACT--T-ATTATTAT--T-------------------------TTC--T-------------------TT------------------------------CT------TAAT-TTT--------------------------------------------------------T--CAT-TATTT
droVir3 scaffold_12963:14327511-14327723 - AAATAAAAAA--------------------------TTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCTTTATGAATGGCA---------G--------------ACAA--TCGATAAAAA--TCTATATAGA------------------------AATTATCTTC-----------------------------------------------------------------------------------------------------TTTGA--------TTTTG--------TATCCTTTATTTTCTCGCTATTTGTT--------------------------ATAAAATTGTTT----------------------------------------------------------GTAACG-------T------------TTAAAC-----------------------------------------------CACCTGTAATAATTAAATAATTTTT------AC-TTTTCA---------------G-AT------TAAA-TATCCACAAATTAGAGATTCTGG------------------------AGTTTACGAATGT--CAG-ATATC
droMoj3 scaffold_6500:11316124-11316338 - ACCGAAGATA----------------------------------------CCGCA-------ATC----------------------------------------------------TTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATAAAAATCCCTTA--------------------------------GACGAAATTTTAAGACTTTATA-------------------AT--AATATATAGTGTGGTATATAAT-----------------------TTTTTTGTTA--------------TTATAATGTAATATTAATATAT----------------------------------------------------------GTATAATATGTATTAAATAAATTGATAAAATGTTTTATTAA-T-----ATTATA-------------------------TAT--A-------------------ATAT--------TTTAAATTTATAAATTGAAATTTATAATTTT-------------------------------------------------------------T--ATT-TCGCC
droGri2 scaffold_15126:1397965-1398177 + AAAAAAAAAC--------------------------CCTAAACTAGTTTTTCATATTCGAAACATTTGAAAAAGTGTG----------------------------------------------------------------------------------------------------------------------------TAAATTATATTAAAAAAAATTAATTAATTAATTTAAAAAATATA--------------------------------------------------------------------------------------------------------------------------------------------------------TT--TTTAGG--------TATTAGTT-----------------------TATATTATTA--------------TTATATTATTATTTTGATATAT-----------TAAAA-----------------------------------------------TTA----AT------------CATAGCGCA-TTTTG-T-----AA----TGTTCACATTTTGATAT---------------------ATAAA-AATT---------------------------------------------------------------------------------------------------AACTATTT--AAA-AAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGCAAAAGTA----------------------GAGTCTAATCGAGCATTCCGTA-------ATTTTAAAATAATAG----------------------------ATTAAAAAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------TAAA---------------------------------------------AACATATA--------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATTATA--------TATTATAT-----------------------TATATTATAA--------------------------------------------------------------------------------TATCGAAATTATTTTGTTTTTTTTTTAT------------CTGAAGTTATTTTTA-T-----AAT---------------------------ACACATACTTTCAATTTAA-ATTTTT------TTATTTCAA---------------G-AT------AAAG-TTTCCTCAATTAAGAGATTCGGG------------------------AGTCTACGAATGT--CAA-GTATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................TTAAAAAAACGTTCGGAC-TTACAGAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2913.00300000003000000000
.................................................................................................................AACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------CTGAAGTTATTTTTA-T-----AAT---------------------------ACACA.........................................................................................................................................2512.00200000000020000000
..GCAAAAGTA----------------------GAGTCTAATCGAGCATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000000020000
...............................................................................................................AAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000002000000000
.......................................................................TAATAG----------------------------ATTAAAAAAACGTTCGGAC-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
.......AGTA----------------------GAGTCTAATCGAGCATTCCGTA-------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
..........................................................................................................TTAAAAAAACGTTCGGAC-TTACAGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAA---------------G-AT------AAAG-TTTCCTCAATTAAGAGA......................................................3011.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAT------------CTGAAGTTATTTTTA-T-----AAT---------------------------ACACA.........................................................................................................................................2811.00100000001000000000
...........................................................................................................TAAAAAAACGTTCGGAC-TTACAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA---------------G-AT------AAAG-TTTCCTCAATTAAGAGA......................................................2911.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAGATTCGGG------------------------AGTCTACGAATGT--.........2611.00100000000001000000
..................................................CCGTA-------ATTTTAAAATAATAG----------------------------ATTAAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.............................................................................................................AAAAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAA---------------G-AT------AAAG-TTTCCTCAATTAAGA........................................................2711.00100000001000000000
.................................................................................................................AACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.......................................................................TAATAG----------------------------ATTAAAAAAACGTTCGGAC-A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
............................................................................................................AAAAAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
..............................................................................................................AAAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..................................................................TAAAATAATAG----------------------------ATTAAAAAAACGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAT------------CTGAAGTTATTTTTA-T-----AAT---------------------------A.............................................................................................................................................2611.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TTATTTCAA---------------G-AT------AAAG-TTTCCTCAAT.............................................................2711.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAAGAGATTCGGG------------------------AGTCTACGAA..............2711.00100000000001000000
..........................................................................TAG----------------------------ATTAAAAAAACGTTCGGAC-TTACAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT------------CTGAAGTTATTTTTA-T-----AAT---------------------------ACACA.........................................................................................................................................2711.00100000000000010000
...............................................................................................................AAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
..........................................................................TAG----------------------------ATTAAAAAAACGTTCGGAC-TTACAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000010000000
.............................................GCATTCCGTA-------ATTTTAAAATAATAG----------------------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
droSec2
AAGCAAAAGTA----------------------GAGTCTAATCGAGCATTCCGTA-------ATTTTAAAATAATAG----------------------------ATTAAAAAAACGTTCGGAC-TTACAGAAAAATT---------------------------------------------------TAAA---------------------------------------------AAAATATA--------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATTATA--------TATTATAT-----------------------TATATTATAA--------------------------------------------------------------------------------TATCGAAATTAGTTTGTTTTTGTTTGAT------------CTGAAGTTATTTTTA-T-----AAT---------------------------ACACATACTTTAAATTAAA-ATTTTT------TTATTTCAA---------------G-AT------AAAG-TTTCCACAATTAAGAGATTCGGG------------------------AGTCTACGAATGT--CAA-GTATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTGAT------------CTGAAGTTATTTTTA-..................................................................................................................................................................................2511.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGAT------------CTGAAGTTATTTTTA-T-----AAT---------------------------A.............................................................................................................................................2811.0010100
dm3
AGCACTCTTAGTTTTGGAATAAT------------------------CCCTCACAGGCGAA---------------------------------------------------------------------------------------------------------------TAAAACTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGCAAGATTCAATAT--ATTATA--------TATTATATTATATTATATTATATTATATTATTATATTATATTATAT-------------------------------------------------------------------------------------------------------------------TATATTATATTATTA-TATTATAT-------------------------------TATATTATTATATTAT-ATTATT------ATATTATAT---------------T-A---------------------------------------------------------------------------TA-ATATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............GGAATAAT------------------------CCCTCACAGGCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GGCGAA---------------------------------------------------------------------------------------------------------------TAAAACTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TAAT------------------------CCCTCACAGGCGAA---------------------------------------------------------------------------------------------------------------TAAAACTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CCCTCACAGGCGAA---------------------------------------------------------------------------------------------------------------TAAAACTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GAATAAT------------------------CCCTCACAGGCGAA---------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........TTTTGGAATAAT------------------------CCCTCACAGGCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTATATTAT-ATTATT------ATA...........................................................................................................2380.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AAAACTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATGA...............................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATATTATATTATAT-------------------------------------------------------------------------------------------------------------------TATATTAT..........................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACTTTA---------GAATGATCGCATAGAAGGTA-----------------------------------------------------------------------GAAAGAGACGTTCGGAC-TTATAGTATAATT---------------------------------------------------CAAAT---ATG--------------AAAAGCATTAGT--------------AATATA--------------------------------------------------------------------------------------------------------------------------------------------------------AC--TTTATA---------------------------------------------------------------------------------------------------------------------------------TATCCAAATGAAAATGCTAT--TTTGAA------------CTGTAA-TACTTTTA-T-----AAT---------------------------A--------ATAAATATAC-ATTTTT------ACATTTCAA---------------G-AT------AAAG-TTTCCTCAACTAAGAGACTCGGG------------------------AATTTACGAATGT--CAA-GTATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AAATTTCAAA-------------------------------GCA---------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTCTTTATTATTA-----------GG--------------AATA--TATGTAAGTT--TATATATCCA------------------------AATTACCATCAGCATTTTT-----------------------------------AAGCAAAA-----------------------------TTTTTATTTCTATA---ATTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACATA--ATAATTAAAA-ATTTGT------ACATTTCAA---------------G-AT------CAAG-TTTTCTCAACTAAGAGATTCGGG------------------------AATCTACGAATGT--CAA-GTATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
AAGTGAAAATG----------------------AAAAAAAAGAAA--ATATTGTA-------ATATTGATATCCAAA----------------------------TCA---------------------------------------------------------------------------------------------------------------------------------AAAAATATATATGTACCTA--TATCAATTGA------------------------AACCATCATCACCGATTTGAAAAAAATGCATCGAGCATTATTATGGATATATA-----------------------------------------------------AA--GCTAAA--------C------------------------------------ATTT--------------------------------------------------------------------------------AATCAAAATCATGCAATTTTTTTTTCAT------------AAAAATCTATATTTA-C-----TGT---------------------------ATATTTACTCGC------------------------------------------------------------------------------------------------------------------------------GATTSizeHit CountTotal NormTotal
No Reads
droBia1
AATAATG---------AAATAATTATAAAAAA----------------------------------------ATTAT----------------------------ATTAATTAAAAAAT---------------TATA---------------------------------------------------TTAA---------------------------------------------TAATTATA--------------------------------------------------------------------------------------------------------------------------------------------------------TT--AAAATA--------TATTATAT-----------------------TATA---AAA--------------------------------------------------------------------------------AAATAAAACAACTTCCCTTCTTGTT-AT------------TTATAGTTCTATT--A-AATATAAT--A-------------------------TAT--A-------------------ATTTTAAT--------TTTTAT----------A-------AAAC-TTAAAACAAATAA-AAACTCTATAGTCTACAGCGCCATCAAG---------------CGC--AATCTAATCSizeHit CountTotal NormTotal
No Reads
droTak1
TAGTCAGAGCA----------------------GTT-----------------------------------------------------------------------GCAAATGTTGTTTGGTA-TTATAAAATAATTTTTAACAGAATTATTAACTA----------------ATTTTGTAT---TAT--------ATT----------------------------------ATATATTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------TA--TATATA--------TATTATAT-----------------------TATATTATATTA------------TTATATCCTTAACTTGATAAAT-----------TGATA-----------------------------------------------TTA----------------------------------T-----AA----TAATTATAATTAAATAGTTATAATATA--------------------------------------------------------------------------------ACTACTTTGGA------------------------TTCTTAACAAGGT--TTA-TTCAASizeHit CountTotal NormTotal
No Reads
droEle1
AAAGTATATTA----------------------AAA-----TCAAGCAAT------------------------------------------------------------------TCCCAGTAATTATGTA---------------------------------------------------AATATT--------AT-------------------AGTCT--------------CAATGAACTGTTATTTCCAATAGCTACTTAAAAAGCTTAAGATTCAATGAAATTTAGTAACGATCATCATATGT-----------------------------------AAAGATGA-----------------------------TT---------------------------------------------------------------TTTATAAGA--------------------------------------------------------------------------------ACTCAAAATTGTTTCGTTTTTTTTTGTT------------TAGAAATTAT-TTTG-T-----AAT---------------------------ATATGTTC--TCGA-------------------C--------TTCCTT----------TT------TAG-----------------------TA------------------------AATATAGTTGTTTCAAAA-TAAGGSizeHit CountTotal NormTotal
No Reads
droRho1
TAATTTGAATA----------------------AAA------------------------------------ATCAA----------------------------ATTAATAAAACATTTGGGT-TAAGGGTTAGATT-AAAGCGAGGTCTTAAAATA----------------TATTTG---AATATT--------ATG--------------AAAAATTCT--------------CATAATATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTCCCTTCTAC------------TTAAAGACATTTTTT-G-----GAC---------------------------TCGGATTTTTTCAGCTTAA-A-------------------------------------TTTGAGTTTCTTTTTTCCTCAAATAAA--------------------------------------------------A-AGTTCSizeHit CountTotal NormTotal
No Reads
droFic1
TTTAAAT---------AAATGAATATTAAAAA----------------------------------------TAA---------------------------------------------AGAT-TTAAATAAATACT---------------------------------------------------TATA---------------------------------------------TAATTATA--------------------------------------------------------------------------------------------------------------------------------------------------------TT--ATATTA--------TATATAAT-----------------------TATATTATATTATAT----------------------TTAATATAT----------------------------------------------------------CTATATTATATTAT------------ATATAATTATATT----------A----TATGTATTA----------------TAG--A-------------------ATAA--------TAAAAATATTTAAATAAATATT---------------------------------------------------------------TATTATTG--AAA-TTAAASizeHit CountTotal NormTotal
No Reads
droKik1
AAATAGA-TTA----------------------GATTTTAATTTTGCAA-----A-------AATTAAAAAAAATATATTAGATTTTATTTTACAATTACAAGAATTTAAAAAAAAATTAAAAA-ATATATTATATTT--------------------TAATTTAGAATTAAAAGAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAATTTT-A-----AAT---------------------------ATATAAGATTTTAATTAAA--------------------------------------------------A-TTGTTTAAAATAATATAT------------AACGTTGTTAAAAACTTAGTTTAAAAATG--------TAAASizeHit CountTotal NormTotal
No Reads
droAna3
AATAAGT---------GGAATA-----------GAATCCAATTGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGAATGAATTGAATCTTGGTATCAAGATGTTTGGAAACTCTTCCTTAAATTTCCAGAACTTTGAGATAAAATTTATAATATTC--TTTATTATA--------TAGTATTC-----------------------TTGATTACTT--------------------------------------------------------------------------------TTTTATATT-----------------GC------------TTATCTTTATT-----T-----AA----TATTCATAATTTAATATTCAAAATACAGATTG--TTCATAGAA-TTCTT---------------------------------------------------------------------------------------------------------T--TTA-TTCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAATTAAATTA----------------------AAATTAAATTAAATTAAATTAA-------ATTAAATTAAATTAA----------------------------ATTAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTAAATTAAATTAAA-----A-----TTAAATTAAAATTAAATTAAA-AATAAAGTTATAATTTAATTTTAATGATTATTTAAATTATTATTTTAATGATTTTT------------TATAATGTATATATA-T-----ATT---------------------------ATATATATATTTTGTATAA-ATTTAT------TTATAA--A---------------A-A----------------------------------------------------------------------------C-AAAGTSizeHit CountTotal NormTotal
No Reads
dp5
GAGCACT---------CGGCCATGGCATAATG----------------------------------------AAGTG----------------------------GATAAAATTATGTCATTAC-TTTCATTAAAAAT---------------------------------------------------TAAA---------------------------------------------AAAATATA--------------------------------------------------------------------------------------------------------------------------------------------------------TA--TCTGTA--------TATAAAAT-----------------------TGAATTATA---------------------------------------------------------------------------------------CATTATTTCGATGTGTTTTTAT------------TGTTAGCTTTTTTTT-T-----TAT---------------------------TTAGCTTATTCGAG--------------------------------------------CT------TATT-----------------------------------------------------------------T-TTTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCGATGTGTTTTTAT------------TGTTAGCTT.........................................................................................................................................................................................2812.0020000000020
......................TGGCATAATG----------------------------------------AAGTG----------------------------GATAAAATTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.5030000000030
..............................................................................................................................................................................................................................................................................................................................................................................................................TA--TCTGTA--------TATAAAAT-----------------------TGAAT...............................................................................................................................................................................................................................................................................................................................2121.0020000000200
...................................................................................................................................TAAAAAT---------------------------------------------------TAAA---------------------------------------------AAAATATA--------------------------------------------------------------------------------------------------------------------------------------------------------TA--TCTGTA--------...................................................................................................................................................................................................................................................................................................................................................................2721.0020000000020
..................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTA--------TATAAAAT-----------------------TGAATTATA---------------------------------------------------------------------------------------CAT.................................................................................................................................................................................................................................2621.0020000000020
..............................................................................................................................................................................................................................................................................................................................................................................................................TA--TCTGTA--------TATAAAAT-----------------------TGAATTA.............................................................................................................................................................................................................................................................................................................................2320.5010000000010
..............................TG----------------------------------------AAGTG----------------------------GATAAAATTATGTCATTAC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000000010
................................................................................................................TTATGTCATTAC-TTTCATTAAAAAT---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................A--TCTGTA--------TATAAAAT-----------------------TGAATTA.............................................................................................................................................................................................................................................................................................................................2220.5010000000010
................................................................................................................TTATGTCATTAC-TTTCATTAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000010
...................CCATGGCATAATG----------------------------------------AAGTG----------------------------GAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010010000000
......................TGGCATAATG----------------------------------------AAGTG----------------------------GATAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.2010000000010
.AGCACT---------CGGCCATGGCATAATG----------------------------------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.0910100000000
droPer2
TTTTAAAATA---------------------------------------------------------------AAAA----------------------------TTTGATATGATATTTGAAT-TTTTATTTTATTT--------------------TTAACTTGTATAATCAAAATTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATTTTATGACTTCA---TTTTT---------------------------------------------------A--------------------------------------------------------------------------------TATAATAATTATTTTTTAATTTTATAAT------------TTAAATTAATTTTAA-T-----AAT---------------------------T----TAATCAAAATTTAA-AATAAA------AAATTACAA---------------A-TA------AAAG-TATATTAAATTT-----------------------------------------------T--GAA-ATTTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AATCTTGGAT-------------------------------------------------------------------------------------------------GGAAATGGCTTGTGGTA-TTATACAAAAATT---------------------------------------------------TTAATATTATGTGGTTATTTTTTA-------------------------------------------------------------------------------------------------T-----------------------------------AAAAAT----------------------------------------------------------------------AT-----------------------TTTTTCAAAA--------------------------------------------------------------------------------TTTCGGAATTATTTTCTCTTCTTTTTTT------------TTCAA-TATTACT--T-ATTATTAT--T-------------------------TTC--T-------------------TT------------------------------CT------TAAT-TTT--------------------------------------------------------T--CAT-TATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................ATTATGTGGTTATTTTTTA-------------------------------------------------------------------------------------------------T-----------------------------------AAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000
..TCTTGGAT-------------------------------------------------------------------------------------------------GGAAATGGCTTGTGGTA-TTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.10202000
AATCTTGGAT-------------------------------------------------------------------------------------------------GGAAATGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
.ATCTTGGAT-------------------------------------------------------------------------------------------------GGAAATGGCTTGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
...CTTGGAT-------------------------------------------------------------------------------------------------GGAAATGGCTTGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
droVir3
AAATAAAAAA--------------------------TTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCTTTATGAATGGCA---------G--------------ACAA--TCGATAAAAA--TCTATATAGA------------------------AATTATCTTC-----------------------------------------------------------------------------------------------------TTTGA--------TTTTG--------TATCCTTTATTTTCTCGCTATTTGTT--------------------------ATAAAATTGTTT----------------------------------------------------------GTAACG-------T------------TTAAAC-----------------------------------------------CACCTGTAATAATTAAATAATTTTT------AC-TTTTCA---------------G-AT------TAAA-TATCCACAAATTAGAGATTCTGG------------------------AGTTTACGAATGT--CAG-ATATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ACCGAAGATA----------------------------------------CCGCA-------ATC----------------------------------------------------TTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAATAAAAATCCCTTA--------------------------------GACGAAATTTTAAGACTTTATA-------------------AT--AATATATAGTGTGGTATATAAT-----------------------TTTTTTGTTA--------------TTATAATGTAATATTAATATAT----------------------------------------------------------GTATAATATGTATTAAATAAATTGATAAAATGTTTTATTAA-T-----ATTATA-------------------------TAT--A-------------------ATAT--------TTTAAATTTATAAATTGAAATTTATAATTTT-------------------------------------------------------------T--ATT-TCGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAAAAAAAAC--------------------------CCTAAACTAGTTTTTCATATTCGAAACATTTGAAAAAGTGTG----------------------------------------------------------------------------------------------------------------------------TAAATTATATTAAAAAAAATTAATTAATTAATTTAAAAAATATA--------------------------------------------------------------------------------------------------------------------------------------------------------TT--TTTAGG--------TATTAGTT-----------------------TATATTATTA--------------TTATATTATTATTTTGATATAT-----------TAAAA-----------------------------------------------TTA----AT------------CATAGCGCA-TTTTG-T-----AA----TGTTCACATTTTGATAT---------------------ATAAA-AATT---------------------------------------------------------------------------------------------------AACTATTT--AAA-AAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:44 PM