ID:

dsi_20141

 Coordinate:

3r:4365338-4365525 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.1 -13.0 -13.0

Flybase annnotation

five_prime_UTR [3r_4365177_4365585_-]; exon [3r_4365137_4365585_-]

No Repeatable elements found

Sense Strand Reads

################################################################################################################################################################################################################################################################################################
GTCTCGTTGGAAATATAACGTGACGTTATTGGGAGTGACTAAGTTTTCGTGTAAGAGAAAATTGCAAATAAATGCGCTGCAAGCAGCTGCAAATGTCTAATTAATACTGCTCTGATTGCCGGACAAGTCCTGCCAACATTTTCGAACGCAACCGAGCTGGAAGAGCAACCGATTTCGCCACTTAAATACTGATATATACACTTTTCTCTTTCTTTACAACTACAACTGCAAATAAAAGTGTAAAGTGTGTGAGCCAACGACAAACGCATTAAAGAAATCGGCGGCGCG
******************************************************************************************************.....((((((....(((((....((.................))....))).))....))))))...********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR902008
ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..........................................................................................................................................................AGCTGGCAGAGCAACGGACT.................................................................................................................. 20 3 14 53.64 751 630 109 1 0 0 4 0 0 0 0 0 7
.........................................................................................................................................................................................................................................................TGAGCCAACGACAAACGCATTAAAGAA............ 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...................................................................................................................................................GCAACCGAGCTGGAAGAGCAACC...................................................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................AATACTGCTCTGATTGCC........................................................................................................................................................................ 18 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................CGCATTAAAGAAATCGGC...... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGAACGCAACCGAGCTGGAAG............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................AATACTGCCCTGATTGCC........................................................................................................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GCATTGAAGAGATCGGCGG.... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
............................TTGGGAGTGACTAAGTTTTCGTTGTA.......................................................................................................................................................................................................................................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................CGACAAACGCATTAAAGAAATCGGC...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTTCGCCACTTAAATACTG................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................GCTCTGATTGCCGGACAAGTC............................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGCAACCGAGCTGGAAGAG........................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................AATTAATACTGCTCTGATTGCC........................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TGTAAAGTGTGTGAGTCAACGACAAACGC..................... 29 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................GCAACCGAGCTGGAAGAGG.......................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................AATTAATACTGCTCTGATTGCCGG...................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................AGTGACTAAGTTTTCGTGTAA.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................CAACGACAAACGCATTAAAGA............. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................AGCTGGCAGAGCAACCGACT.................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................ACTAGGTTTTCGTGTAAGAGA...................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................CTAATTAATACTGCTCTGATTGCC........................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............ATAACGTGACGTTATTGG................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................AAGTTTTCGTGTAAGAGAAAA................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................GTAAAGTGTGTGAGCCAAC.............................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................AGTGTGTGAGCCAACGACAA......................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................CTAATTAATACTGCTCTGATTGCCG....................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GCAACCGAGCTGGAAGAGCAACCGATTT................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................ACGTGACGTTATTGGGAG............................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GCATTAAAGAAATCGGCGGCGC. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AAATGCGCTGCAAGCAGCT........................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................TTAAAGAAATCGGCGGCGC. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................AACGCATTAAAGAAATCGGCG..... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................ACTGCTCTGATTGCCGGACA................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGCTGGCAGAGCAACGGA.................................................................................................................... 18 2 15 0.93 14 5 1 0 0 0 8 0 0 0 0 0 0
.................................AGTGACTAAGTTTTCGT.............................................................................................................................................................................................................................................. 17 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...................GTGACGTCATTGGGAGTGAAA........................................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................CGAATGACTAAGTTTTCCTG............................................................................................................................................................................................................................................. 20 3 6 0.33 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................AGAGCAACTGATTTCG............................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................GGTAGAGCGACTGATTTCG............................................................................................................... 19 3 18 0.17 3 0 0 0 0 0 0 0 0 0 0 3 0
...............................................................................................................................................................................................................................................................................AAGAACTCGGCGGCG.. 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................GCTGCGACTGTCTAATTA......................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................ATTAGAGGAATCGGGGGCG.. 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................TATTGGGATTGACTAAACT................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................AATACTGATTTATACGCTA..................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CAGAGCAACCTTTATATTGCACTGCAATAACCCTCACTGATTCAAAAGCACATTCTCTTTTAACGTTTATTTACGCGACGTTCGTCGACGTTTACAGATTAATTATGACGAGACTAACGGCCTGTTCAGGACGGTTGTAAAAGCTTGCGTTGGCTCGACCTTCTCGTTGGCTAAAGCGGTGAATTTATGACTATATATGTGAAAAGAGAAAGAAATGTTGATGTTGACGTTTATTTTCACATTTCACACACTCGGTTGCTGTTTGCGTAATTTCTTTAGCCGCCGCGC
**********************************************************************************************************************.....((((((....(((((....((.................))....))).))....))))))...****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
...............................................................................................AGATTAATTATGAAGA................................................................................................................................................................................. 16 1 3 3.33 10 10 0 0 0 0 0 0 0 0 0 0
...................................................................................GTCGACGTTTACAGATTAATT........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................GCTTGCGTTGGCTCGACCTT.............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................CTCGGTTGCTGTTTGCGTAAT................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GCTTGCGTTGGCTCGACCTTCTC........................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................AGGACGGTTGTAAAAGCTTGC............................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................TCACTGATTCAAAAGCACATTC......................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................CAGGACGGTTGTAAAAGCTT.............................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................CGGTTGTAAAAGCTTGCGTA......................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................CACTGATTCAAAAGCACATT.......................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................ATGTTGATGTTGACGTTTGTTTT................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................GGACGGTTTTGAAAGCTTGCG........................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................ATTCGGTTGCTGTTTGCGT.................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................ACTCGGTTGCTGTTTGCGTAGT................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................TCAGGAGGGTGGTAAAAGC................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................TCAGGACGGGTGTGAAAGCTT.............................................................................................................................................. 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATGTCGCTGTTGACATTTATT..................................................... 21 3 9 0.22 2 0 0 0 0 0 0 0 0 0 2 0
...........................................AAAATCACATTCTCTTTTAT................................................................................................................................................................................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
............................AACCCTCAGTGATTCA.................................................................................................................................................................................................................................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TGGCTAACGGCCTGTTCAG............................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
.........................AATAACCTTCACTCATTCAGA.................................................................................................................................................................................................................................................. 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1
............................CACTCTCACTGATTCA.................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 03:54 AM