ID:

dsi_20113

 Coordinate:

3l:4844537-4844686 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.5 -14.5 -14.5 -13.6

Flybase annnotation

five_prime_UTR [3l_4844394_4844490_+]; CDS [3l_4844491_4844536_+]; exon [3l_4844394_4844536_+]; intron [3l_4844537_4845791_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTGCCGAGTTTTGAGTGCCAACCAGAGATACGCAGCACATCTGCGAGATACTTTTTGGTGCAAGTGTGAGACTTTGCGGCATTATGATGCGCTGGTGCATGCGTATGATCCCATAGGTGTGGGGTTTTAATAACCCAACTTCAGCAATTGGAGACTCTAACGATGAGTAACTGG
***********************************************************************************************************************************((.(((..((((...(((..((.((((....)))))).)))))))..))))).****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................................ATGCGTATGATCCCATAGGTGTGGGGT................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGTGCAAGTGTGAGACTTTGC................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...CACGAAGTTGGCTAAGAAGTACT................................................................................................................................................................................................................................ 23 3 1 2.00 2 0 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................TGCGTATGATCCCATAGGTGTGGGGT................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGCAATTGGAGACTCTAACGATGAGT...... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................TGCCTGGGTAAAGTTCTGCATGCTC...................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................GCCTGGGTAAAGTTC............................................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTGGTGCAAGTGTGAGACTTTGCGGCA............................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............TAAGAAGTGCTCCACCTACTTGGTGATA............................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AGTGTGAGACTTTGCGGCA............................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......GAAGTTGGCTAAGAAGTACT................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......GAAGTTGGCTAAGAAGTGCTC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................GCTGGTGCATGCGTATGA.................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................TCTGCGAGATACTTTTT...................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....TGAAGTTGGCTAAGAAGTGCTCCACC........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...AATGAAGTTGGCTAAGAAGTGCTC............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................TGCCAACCAGAGATACGCAGCAC........................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GACTTTGCGGCATTATGATGCGCT................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................CAACCAGAGATACGCAGCA......................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGTGCAAGTGTGAGACTTTGCTGC.............................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....ATGAAGTTGGCTAAGAAGTG.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..AAATGAAGTTGGCTAAGAAGTGCTCCAC............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................TGGTGCAAGTGTGAGACTTTG.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........TGGCTAAGAAGTGCTCCACC........................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGTGCAAGTGTGAGACTTTGCGGCA............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................TGCCGAGTTTTGAGTGCCAACCAGAGA.................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCGAGATACTTTTTGGTGCAAGTG............................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....CGAAGTTGGCTAAGAAGTACT................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................TGGGTAAAGTTCTGCATGCTCGATC.................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGCGAGATACTTTTTGGTGCAAGTGT........................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGCGTATGATCCCATAGGTGTGGGCT................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACCCAACTTCAGCAATTGGAGACTC................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............TAAGAAGTGCTCCACCTACTTGGTGAA................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TTCGAATCTGCCGAGTTTTGAGTGC............................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGCATGCGTATGATCCCATAGGTGTG..................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTGGAGACTCTAACGATGAGTAACTG. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGATCCCATAGGTGTGGGGT................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................TAAAGTTCTGCATGCTCGTT................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGGTGCAAGTGTGAGACTTTGCGGC.............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TACTTTTTGGTGCAAGTGTGAGACTT.................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................GTGATATGCCTGGGTAAAGTTC............................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ATTATGATGCGCTGGTGCATGCGTA..................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................AGAAGTGCTCCACCTACTTG..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...AATGAAGTTGGCTAAGAAGTGCTCCAC............................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................GTTTTGAGTGCCAACCAGAGATACGC............................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................................TGCCTGGGTAAAGTTCTGCATG......................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............TAAGAAGTGCTCCACCTACTTGGT................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................GTTCGAATCTGCCCAGA..................................................................................................................................................................... 17 2 13 0.77 10 0 0 0 7 0 0 0 0 1 2
....................................................................................TGTTGAGTGCAAACCAGAGAGA................................................................................................................................................ 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
....................................................................GTTCGAATCTGCCCA....................................................................................................................................................................... 15 1 4 0.50 2 0 0 0 2 0 0 0 0 0 0
...........................................................................................................................................................................................................TAGCAACCCAACTTCAGCA............................ 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
....................................................................GTTCGAATCTGCCCAG...................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0
......................................................AGTTCTGAAGGCTCGGTCGAA............................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................TTGGTGTAACTGTGAGTCTT.................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................GTGGGAGACTTTGAAGCAT............................................................................................ 19 3 20 0.20 4 0 0 0 4 0 0 0 0 0 0
................................................................GCTAGTTCGAATCTG........................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0
................................ACTTCGGGATAAGCCTGGG....................................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................ACCAATTGGAGACTCTC............... 17 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTATGTTGCGCTGGTGCGGG......................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0
................................ACTCTGTGATAAGCCTGGG....................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGGTATTGGAGAATCTAAC............. 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CCTTTACTTCAACCGATTCTTCACGAGGTGGATGAACCACTATACGGACCCATTTCAAGACGTACGAGCAAGCTTAGACGGCTCAAAACTCACGGTTGGTCTCTATGCGTCGTGTAGACGCTCTATGAAAAACCACGTTCACACTCTGAAACGCCGTAATACTACGCGACCACGTACGCATACTAGGGTATCCACACCCCAAAATTATTGGGTTGAAGTCGTTAACCTCTGAGATTGCTACTCATTGACC
******************************************************************((.(((..((((...(((..((.((((....)))))).)))))))..))))).*********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
..........................GGGGTATGAAGCACTATACGGA.......................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................................TCTGAGATTGCTACTCATTGA.. 21 0 1 1.00 1 1 0 0 0
................................................................CAAGTAAGCTTAGACGGC........................................................................................................................................................................ 18 2 2 0.50 1 0 0 1 0
...................................................................................................TCTCGATGCGTCGTGT....................................................................................................................................... 16 1 4 0.25 1 0 0 0 1
...............................................................................................................................................................................................................TTGGGTTGAAGTCGT............................ 15 0 10 0.20 2 2 0 0 0
............................................CGGACCCATTTCAAGTTG............................................................................................................................................................................................ 18 2 8 0.13 1 0 0 1 0
................................................................................................................................................CCTGTAAGGCCGTAATACTA...................................................................................... 20 3 9 0.11 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:4844487-4844736 + dsi_20113 G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGCAG-CACATCTGCGAGATAC----TTTTT--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTGCGGCATTAT----------GATG----CGCTGG----------------T--------------------------------------------------------GCATGCGTATGAT---------------------CCCATAGGTGTGG---GGTTTTAA----------------TAACCCAACTTC-AGCAA-----TTGGAGACTC-TAAC--GATGAGTAAC--TGG
droSec2 scaffold_2:4885694-4885943 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGCAG-CACATCTGTGAGATAC----TTTTT--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTGCGGCATTAT----------GATG----CGCTGG----------------T--------------------------------------------------------GCATGCGTATGAT---------------------CCCATAGGTGTGG---GGTTTTAA----------------TAACCCAACTTC-AGCAA-----TTTGAGAATC-TAAC--GATGAGTAAC--TGG
dm3 chr3L:4898993-4899266 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACTAG-A--------GATACGCAG-CACACCGGCGAGATAC----TTTTT--G-----------------GTGCATGTGT------G------------------------------------TGGGC-----------------------------GGAGTATTGTGCAT--G---TGTGAGACTTTAACGCATTAT----------GATG----CACTGA----------------T--------------------------------------------------------GCATCCGTATGAT---------------------TCCATAGGTGTGG---GGTTTTAA----------------TAACCCAACTTC-AGCAA-----TTGGAGACTC-TAAC--GATGAGTAAC--TGG
droEre2 scaffold_4784:7617444-7617713 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGCTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGCAG-CACATCTGCGAGATAC----TTTTT--G-----------------GTGCAAGTGT------G------------------------------------AGGAC-----------------------------GGAGCATTGTGCAT--G---TGTGAGACTGTGCCGCATTTT----------GAGG----CGCTGG----------------T--------------------------------------------------------GCAT-CGTATGAG---------------------CCCATAGGTGTGG---GGCTTTAA----------------TCACCCAACTTC-AGCAA-----TTGGTGAC---TAGC--AATGAGTAAC--TG-
droYak3 3L:5484978-5485254 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGCTGATATGCCTGGGTAAAGTTCTGCATCCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTCGAGTG------------------CCAACCAG-A--------GATACGCAG-CACATCTGCGAGATAC----ATTTT--G-----------------GTGCCAGTGT------G------------------------------------TGGAC-----------------------------GGAGTATTGTGCAT--GTGTTGTGGGATTATGCCGCATTAT----------GATG----CGCTAG----------------T--------------------------------------------------------GCATCCGTATGAT---------------------CCCATAGGTGTGG---GGTTTTAA----------------TAACCCAACTTC-AGCAA-----TTGGAGACTC-TAAC--GATGAGTAAC--TGG
droEug1 scf7180000409466:2682495-2682756 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACATACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTTGAATCTG---CTG------------------------------------------------AGT-TTTGAGTG------------------CCAGCCAG-A--------GATA---------------------C----TTTTC--CT------------------G--T-------GTG-TGTTTGTATG------------GACG----------TGGAC-----------------------------CGAGTATTGTGTAT--C---TGTGAAACTAAGCTGCATTAT----------AATG----TGCTAG----------------T--------------------------------------------------------GCATCCAGAGAAT---------------------CTCAAAGGTGTGG----GTCTTAA----------------TGACCCAACTTC-AGCAA-----TTGGAGACTT-TAAC--GATGAGTAAC--TGG
droBia1 scf7180000302428:2073022-2073277 - G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATACTCGTTTGAATCTG---TTG------------------------------------------------GGT-TTTGAGTG------------------C----------------------------GTATCTGCGAGATACGTACTTTTC--GT------------------G--AGTGT------G------------------------------------TGGAC-----------------------------CGAGGATTGTGTAG--C---CGTGGGACCAAGCTGCATTGT----------AGTT----CGCTGC----------------T--------------------------------------------------------GCAGCCAAAGTAT---------------------CTCGGAGGTGTGG----GCTTTAA----------------TGACCCAACTTC-AGCAA-----TGGGAGACTT-TAAC--GATGAGTAAC--TAG
droTak1 scf7180000415157:27076-27352 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTTGAATCTG---TTG------------------------------------------------AGT-TTTGAGTG------------------CCAGCCAG-A--------GATACGCAG-CGTATCTGGTGGATATGTAGCTCT--------------------------AGTGT------G----------------------------------------------------------------------GGTGTATTGTGTAT--CTA-TGTGAGACTAAGCTGCATTAT----------AATG----TGCTGGTGATGT----------T--------------------------------------------------------GCAACCAAAGGAT---------------------CTCGGAGGTGTGGGGGCGTTTTAA----------------CGGCCCAACTTC-AGCAA-----TTGGAGACCT-TAAC--GATGAGTAAC--TGG
droEle1 scf7180000491249:5863981-5864218 + G----------GAAATGAAGTTGGCTAAGAAGTACTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTTGTTTGAATCCG---CTG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-C--------GATA------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTGTGTC---TGTGAAACTAAGCTGCACTGT----------AATG----TGCAAT----------------T--------------------------------------------------------GCATACGAATA-TGG----GA-------------TCCATAGGTGTGGTGGGGTTTTAA----------------TGACCCAACTGG-AGCAATTGAATTGGAGAGTC-TAAC--GATGAGTAAC--TGG
droRho1 scf7180000776855:11015-11251 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGAATCCTCGTTTGAATCTG---CTG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGC---------------ATAC----TTTTG--GC--------------------------CGTGTG-T----------------------------------------------------------------------------TCTGAGTGCC---TGTGAAACTAAGCTGCATTGT----------AAGG----CGCTGG----------------T--------------------------------------------------------GCAAC-------------------------------CAAAGGTGTGG---GGTCTTAA----------------TGACCCAACTTC-AGCAA-----TTGGAGAGTT-TAAC--GATGAGTAAC--TGG
droFic1 scf7180000454065:662567-662817 - G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTATCTGCTGATATGCCTGGGTAAAGTTCTGCATACTCGTTTGAATCTG---TAC------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGCAG-AGTATCTGCAAGATAC----TTTTC--GT------------------G--T-------GTG-TG----------------------------------TTGTC-----------------------------GGTTTATTGTGTAC--C---TGTGAAACCAAGCTGCATTAT----------AATG----TGC-----------------------------------------------------------------------------------------------------------------AGAGGTGTGG---GATTTTAA----------------TGACCCAACTTC-TGCAA-----TTGGAGAGTT-TAAC--GATGAGTAAC--TGG
droKik1 scf7180000302351:523382-523633 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATAC------GAG--TG---CTC------------------------------------------------CGT-TTTGAGT--------------------------------------------------ATCTGCCAGATAC----ATTCTCCGC------------------G--T-------GTG-TGTTAGTGTGTTACCTGAAATGGCCATCAAAAGGCATAAC-----TGCAGC----ATCATAATAGGAG--TAGA-----------------------------------------------------------------GACACGCCC-AGCGTAACCGTG------------------------------------------------------------------------------------------GAGG---GGCCTTAA----------------TGGCGCAACTTCCAGCAA-----TTGGAGACTT-TAAC--GATGAGTAAC--TGG
droAna3 scaffold_13337:2992254-2992575 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATTTGCCTGGGTAAAGTTCTGCATA------TGATTCTG---CTA------------------------------------------------AGTTTTTGAGTT------------------T------------------------TT-CGTATCTTTGAGATAC----TTTTC--GCGAGTACTTGCCTCTCTGTGGGAGT-----GTG-TGTTTGTGTCTGTGCTGAAATGGCCATCAAAAAGCAGTGC-----TGCTGC----ATCATAATGGCGGTA------------------------------------------CTCCGTGTCAGTTTTCCGGCTAG----------------T--------------------------------------------------------GCATCCAAAAGATAGTCTTGCTCCCAACAGGAGT---GCAGGTGGGG---GATTTTAA----------------TGAGCTAACTTC-GGCAA-----TTGGAGACTT-TAAC--GATGAGTAAC--TGG
droBip1 scf7180000396378:299452-299767 + G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATA------TGATTCTG---CCA------------------------------------------------AGTTTTTGAGTT------------------T------------------------TC-CGTATCTTTGAGATAC----TTTTC--GCGA--------------GTGCCTGT-----ATG-TGTTTGTGTCTGCGCCGAAATGGCCATCAAAAAGCAGTGA-----TGGTGC----ATCATAATGGCGGAA--T----A----------GT------------------TATACTCCGTGTCAGTTTTCCGGCTAG----------------T--------------------------------------------------------GCATCCAAAAGATACTCTCGCTCCCGACAGGAGT---GCAGGTGTGG---GATTTTAA----------------TGAGCCAACTTT-GGCAA-----TTGGAGACTT-TAAC--GATGAGTAAC--TGG
dp5 XR_group8:3053183-3053487 + A----------AAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGC-------TCTGAATATGGGGCTC---------------------------------------------A--ACT-TTTGAGTTGCTCCTCCTCC---TCCTC------------------------TT-CCTATCTTGAAGAAGC----C----------------------------------CGTGTG-TG--------------------------------CAGTAACCGACCCGTGC----ATCATAACAGCGATA--T----A----------GT-------------------------------------------AGTGGCATTACACTCAAGTGTATCCGCAGCAAAGGGGCAGTGGGAGTGGCCATGGCAGTGCAGTGTTGAAAAGGG-------------------------------------AGAGGTAGAG----GATGTAA----------------TGACCTAACTCC-GACCA-----TTGGAGACTT-TAAC--GATGACTAAC--TGA
droPer2 scaffold_465:14325-14642 - AACGAAAACAAAAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGC-------TCTGAATATGGGGCTC---------------------------------------------A--ACT-TTTGAGATGCTCCTCCTCCTCCTCCTC------------------------CT-CCTATCTTGAAGAAGC----C----------------------------------CGTGTG-TG--------------------------------CAGTAACCGACCCCTGC----ATCATAACAGCGATA--T----A----------GT-------------------------------------------AGTGGCATTACACTCAAGTGTATCCGCAGCAAGGGGGCAGTGGGAGTGGCCATGGCAGTGCAGTGTTGAAAAGGG-------------------------------------AGAGGTAGAG----GATGTAA----------------TGACCTAACTCC-GACCA-----TTGGAGACTT-TAAC--GATGACTAAC--TGA
droWil2 scf2_1100000004511:10419050-10419382 - G----------GAAATGAAGTTGGCTAAGAAGTGTTCCACATACTTGGTGATATGCCTGGGTAACGTTGGCCTTA------AGATTAT------AAGCTGTGTAGGAGAGGAAGCAAGTGTGTGTGTGTGTGTCTAACAAAAGTTT-TTTGAGTA------------------CCATTTAAGAGAAGGTTTGATATTCAGACACAT-------ATAT----TTTTT--TT------------------TCATGTGCTGTGTG-TATTTGAGTGTGG---GAAATGCAGAT--------------CCCTCGATGA----ATCACTAGAAAGATA--T----C----------AT-------------------------------------------CCT----TTTTTTTACAGTGTTTTT------------------------------------------------------------------------------------------------------TCTCAGTGCATACATGGGTTAAAAATATGGGTAC-AACAT-----ATTAGGACTCATACC--TGTGAGTAACCGTGA
droVir3 scaffold_12758:618734-618795 + G----------AAAATGATGTGGCCCAAGAAGTGCTCCACCTACCTGGTGATATGTTTGGGTAAAGTTTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:1690240-1690327 + -------------AATGATGTTGCTCAAGAAGTTCTCCACCTGTTTGATGATATGTCTGGGTAAAGTTT---ATG-TGATTTAAGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTG--------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTTTAG----------------TG-----------------------------------------------------
droGri2 scaffold_15110:862397-862589 - T----------AAAATGAAGTTGTCCAAGAAATGCTCCACCTATTTTCTGATATGTCTGGGTAAAGTTA---ATGCTTAT----AACAG---TTG------------------------------------------------AAG-AGTGTATG------------------GCAAGGA--------------------------------------------------------------------------------------------------------------------GCATAAT-----TTTAATATGCAACAAAGTGAC----TAAAAATTGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA---------TGTTGAA----------------TGACTAAACTCG-AATTA---AATCGAAAAGAA-AAGCCGTATGAGTAAC--AAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGCAG-CACATCTGCGAGATAC----TTTTT--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTGCGGCATTAT----------GATG----CGCTGG----------------T--------------------------------------------------------GCATGCGTATGAT---------------------CCCATAGGTGTGG---GGTTTTAA----------------TAACCCAACTTC-AGCAA-----TTGGAGACTC-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGTATGAT---------------------CCCATAGGTGTGG---GGT............................................................................2712.00200000000002000000
.................................................................................................................................................................................................................................T--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTGC..........................................................................................................................................................................................................................................2212.00200000000002000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTATGAT---------------------CCCATAGGTGTGG---GGT............................................................................2612.00200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA-----TTGGAGACTC-TAAC--GATGAGT........2611.00100000000001000000
.....................................................TGCCTGGGTAAAGTTCTGCATGCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
......................................................GCCTGGGTAAAGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
................................................................................................................................................................................................................................TT--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTGCGGCA......................................................................................................................................................................................................................................2711.00100000000001000000
.........................TAAGAAGTGCTCCACCTACTTGGTGATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
...........................................................................................................................................................................................................................................................AG----------------------------------------------------------------------------------------------------TGTGAGACTTTGCGGCA......................................................................................................................................................................................................................................1911.00100100000000000000
................GAAGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCTGG----------------T--------------------------------------------------------GCATGCGTATGA.....................................................................................................................1811.00100000000001000000
.............................................................................................................................................................................................................TCTGCGAGATAC----TTTTT--....................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
...............TGAAGTTGGCTAAGAAGTGCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.............AATGAAGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.........................................................................................................................................................TG------------------CCAACCAG-A--------GATACGCAG-CAC............................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................GACTTTGCGGCATTAT----------GATG----CGCT............................................................................................................................................................................................................2411.00100000000001000000
..............................................................................................................................................................................CAACCAG-A--------GATACGCAG-CA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
..............ATGAAGTTGGCTAAGAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
............AAATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
.................................................................................................................................................................................................................................T--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTG...........................................................................................................................................................................................................................................2111.00100000000001000000
.....................TGGCTAAGAAGTGCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.................................................................................................................................................................................................................................T--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTGCGGCA......................................................................................................................................................................................................................................2611.00100000000001000000
.......................................................................................TG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GA.......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
...............................................................................................................................................................................................................TGCGAGATAC----TTTTT--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TG.....................................................................................................................................................................................................................................................2511.00100000000001000000
...............................................................................................................................................................................................................TGCGAGATAC----TTTTT--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGT....................................................................................................................................................................................................................................................2611.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCCAACTTC-AGCAA-----TTGGAGACTC-.....................2611.00100000000001000000
.........................TAAGAAGTGCTCCACCTACTTGGTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
...............................................................................TTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------GCATGCGTATGAT---------------------CCCATAGGTGTG...................................................................................2611.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGACTC-TAAC--GATGAGTAAC--TG.2611.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAT---------------------CCCATAGGTGTGG---GGT............................................................................2011.00100000000001000000
.............................................................TAAAGTTCTGCATGCTCGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.................................................................................................................................................................................................................................T--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTGCGGC.......................................................................................................................................................................................................................................2511.00100000000001000000
......................................................................................................................................................................................................................TAC----TTTTT--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTT.............................................................................................................................................................................................................................................2611.00100000000001000000
...............................................GTGATATGCCTGGGTAAAGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................ATTAT----------GATG----CGCTGG----------------T--------------------------------------------------------GCATGCGTA........................................................................................................................2511.00100000000001000000
...........................AGAAGTGCTCCACCTACTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
.............AATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
................................................................................................................................................GT-TTTGAGTG------------------CCAACCAG-A--------GATACGC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
.....................................................TGCCTGGGTAAAGTTCTGCATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
.........................TAAGAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
droSec2
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGCAG-CACATCTGTGAGATAC----TTTTT--G-----------------GTGCAAG----------------------------------------------------------------------------------------------------TGTGAGACTTTGCGGCATTAT----------GATG----CGCTGG----------------T--------------------------------------------------------GCATGCGTATGAT---------------------CCCATAGGTGTGG---GGTTTTAA----------------TAACCCAACTTC-AGCAA-----TTTGAGAATC-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............AATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020110
..............ATGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
G----------GAAATGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
...........................AGAAGTGCTCCACCTACTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
................GAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
..........................AAGAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..............ATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
............AAATGAAGTTGGCTAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.......................GCTAAGAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
dm3
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACTAG-A--------GATACGCAG-CACACCGGCGAGATAC----TTTTT--G-----------------GTGCATGTGT------G------------------------------------TGGGC-----------------------------GGAGTATTGTGCAT--G---TGTGAGACTTTAACGCATTAT----------GATG----CACTGA----------------T--------------------------------------------------------GCATCCGTATGAT---------------------TCCATAGGTGTGG---GGTTTTAA----------------TAACCCAACTTC-AGCAA-----TTGGAGACTC-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................CTACTTGGTGATATGCCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ACTTGGTGATATGCCTGGTAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AATGAAGTTGGCTAAGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
..................AGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000
...................GTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000
.................................................GATATGCCTGGGTAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AATGAAGTTGGCTAAGAAGTGCTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................AAGAAGTGCTCCACCTACTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................GAAGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................CTAAGAAGTGCTCCACCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........GAAATGAAGTTGGCTAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................................................................................................................................T------G------------------------------------TGGGC-----------------------------GGAGTATTGTGCAT--G---TGT....................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................GAAGTTGGCTAAGAAGTGCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................CACCTACTTGGTGATATGCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TTGGCTAAGAAGTGCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................TATGCCTGGGTAAAGTTCTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................AGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................GAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGAAGTTGGCTAAGAAGTGCTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGGTGTGG---GGTTTTAA----------------TAACCC.................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CTCCACCTACTTGGTGATATGCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................GGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............AATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................AGAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................................................................................................................................................................GCATGTGT------G------------------------------------TGGGC-----------------------------GGAGTATTGTGC...............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............TGAAGTTGGCTAAGAAGTGCTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................CACCTACTTGGTGATATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............AATGAAGTTGGCTAAGAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............TGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................CGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................GTTCTGCATGCTCGTTCGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGAAGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................TAAGAAGTGCTCCACCTACTTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............ATGAAGTTGGCTAAGAAGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................TTGGCTAAGAAGTGCTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AGTTGGCTAAGAAGTGCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................AGTTGGCTAAGAAGTGCTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................ATTAT----------GATG----CACTGA----------------T--------------------------------------------------------GC...............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................T--G-----------------GTGCATGTGT------G------------------------------------TGGGC-----------------------------...........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGAAGTTGGCTAAGAAGTGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ATAC----TTTTT--G-----------------GTGCATGT..........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGAAGTTGGCTAAGAAGTGCTCCACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............TGAAGTTGGCTAAGAAGTGCTCCACCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............ATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................GAAGTTGGCTAAGAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGCTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGCAG-CACATCTGCGAGATAC----TTTTT--G-----------------GTGCAAGTGT------G------------------------------------AGGAC-----------------------------GGAGCATTGTGCAT--G---TGTGAGACTGTGCCGCATTTT----------GAGG----CGCTGG----------------T--------------------------------------------------------GCAT-CGTATGAG---------------------CCCATAGGTGTGG---GGCTTTAA----------------TCACCCAACTTC-AGCAA-----TTGGTGAC---TAGC--AATGAGTAAC--TG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................GTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...................GTTGGCTAAGAAGTGCTCCACCTACTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..................AGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
..............ATGAAGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..................................................................................................................................................................................................................................................................................................................................................ATTGTGCAT--G---TGTGAGACT..............................................................................................................................................................................................................................................1911.0010000100
...............................GTGCTCCACCTACTTGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.................AAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
.................................GCTCCACCTACTTGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
.................................GCTCCACCTACTTGCTGATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
................GAAGTTGGCTAAGAAGTGCTCCACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..................AGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.......................GCTAAGAAGTGCTCCACCTACTTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
droYak3
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGCTGATATGCCTGGGTAAAGTTCTGCATCCTCGTTCGAATCTG---CCG------------------------------------------------AGT-TTCGAGTG------------------CCAACCAG-A--------GATACGCAG-CACATCTGCGAGATAC----ATTTT--G-----------------GTGCCAGTGT------G------------------------------------TGGAC-----------------------------GGAGTATTGTGCAT--GTGTTGTGGGATTATGCCGCATTAT----------GATG----CGCTAG----------------T--------------------------------------------------------GCATCCGTATGAT---------------------CCCATAGGTGTGG---GGTTTTAA----------------TAACCCAACTTC-AGCAA-----TTGGAGACTC-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............AATGAAGTTGGCTAAGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
................GAAGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
..............................AGTGCTCCACCTACTTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.............AATGAAGTTGGCTAAGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...............................GTGCTCCACCTACTTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................CTACTTGCTGATATGCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000
G----------GAAATGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.....................................CACCTACTTGCTGATATGCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.....................................................................................................................................................................................................................ATAC----ATTTT--G-----------------GTGCCAGTGT------G------------------------------------TGGAC-----------------------------GGA........................................................................................................................................................................................................................................................................2911.00100000010000
..............ATGAAGTTGGCTAAGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................GGCTAAGAAGTGCTCCACCTACTTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..............ATGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACATACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTTGAATCTG---CTG------------------------------------------------AGT-TTTGAGTG------------------CCAGCCAG-A--------GATA---------------------C----TTTTC--CT------------------G--T-------GTG-TGTTTGTATG------------GACG----------TGGAC-----------------------------CGAGTATTGTGTAT--C---TGTGAAACTAAGCTGCATTAT----------AATG----TGCTAG----------------T--------------------------------------------------------GCATCCAGAGAAT---------------------CTCAAAGGTGTGG----GTCTTAA----------------TGACCCAACTTC-AGCAA-----TTGGAGACTT-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotal
No Reads
droBia1
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATACTCGTTTGAATCTG---TTG------------------------------------------------GGT-TTTGAGTG------------------C----------------------------GTATCTGCGAGATACGTACTTTTC--GT------------------G--AGTGT------G------------------------------------TGGAC-----------------------------CGAGGATTGTGTAG--C---CGTGGGACCAAGCTGCATTGT----------AGTT----CGCTGC----------------T--------------------------------------------------------GCAGCCAAAGTAT---------------------CTCGGAGGTGTGG----GCTTTAA----------------TGACCCAACTTC-AGCAA-----TGGGAGACTT-TAAC--GATGAGTAAC--TAGSizeHit CountTotal NormTotal
No Reads
droTak1
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTCGTTTGAATCTG---TTG------------------------------------------------AGT-TTTGAGTG------------------CCAGCCAG-A--------GATACGCAG-CGTATCTGGTGGATATGTAGCTCT--------------------------AGTGT------G----------------------------------------------------------------------GGTGTATTGTGTAT--CTA-TGTGAGACTAAGCTGCATTAT----------AATG----TGCTGGTGATGT----------T--------------------------------------------------------GCAACCAAAGGAT---------------------CTCGGAGGTGTGGGGGCGTTTTAA----------------CGGCCCAACTTC-AGCAA-----TTGGAGACCT-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotal
No Reads
droEle1
G----------GAAATGAAGTTGGCTAAGAAGTACTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATGCTTGTTTGAATCCG---CTG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-C--------GATA------------------------------------------------------------------------------------------------------------------------------------------------TTGTGTGTGTC---TGTGAAACTAAGCTGCACTGT----------AATG----TGCAAT----------------T--------------------------------------------------------GCATACGAATA-TGG----GA-------------TCCATAGGTGTGGTGGGGTTTTAA----------------TGACCCAACTGG-AGCAATTGAATTGGAGAGTC-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotal
No Reads
droRho1
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGAATCCTCGTTTGAATCTG---CTG------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGC---------------ATAC----TTTTG--GC--------------------------CGTGTG-T----------------------------------------------------------------------------TCTGAGTGCC---TGTGAAACTAAGCTGCATTGT----------AAGG----CGCTGG----------------T--------------------------------------------------------GCAAC-------------------------------CAAAGGTGTGG---GGTCTTAA----------------TGACCCAACTTC-AGCAA-----TTGGAGAGTT-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotal
No Reads
droFic1
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTATCTGCTGATATGCCTGGGTAAAGTTCTGCATACTCGTTTGAATCTG---TAC------------------------------------------------AGT-TTTGAGTG------------------CCAACCAG-A--------GATACGCAG-AGTATCTGCAAGATAC----TTTTC--GT------------------G--T-------GTG-TG----------------------------------TTGTC-----------------------------GGTTTATTGTGTAC--C---TGTGAAACCAAGCTGCATTAT----------AATG----TGC-----------------------------------------------------------------------------------------------------------------AGAGGTGTGG---GATTTTAA----------------TGACCCAACTTC-TGCAA-----TTGGAGAGTT-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotal
No Reads
droKik1
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATAC------GAG--TG---CTC------------------------------------------------CGT-TTTGAGT--------------------------------------------------ATCTGCCAGATAC----ATTCTCCGC------------------G--T-------GTG-TGTTAGTGTGTTACCTGAAATGGCCATCAAAAGGCATAAC-----TGCAGC----ATCATAATAGGAG--TAGA-----------------------------------------------------------------GACACGCCC-AGCGTAACCGTG------------------------------------------------------------------------------------------GAGG---GGCCTTAA----------------TGGCGCAACTTCCAGCAA-----TTGGAGACTT-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotal
No Reads
droAna3
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATTTGCCTGGGTAAAGTTCTGCATA------TGATTCTG---CTA------------------------------------------------AGTTTTTGAGTT------------------T------------------------TT-CGTATCTTTGAGATAC----TTTTC--GCGAGTACTTGCCTCTCTGTGGGAGT-----GTG-TGTTTGTGTCTGTGCTGAAATGGCCATCAAAAAGCAGTGC-----TGCTGC----ATCATAATGGCGGTA------------------------------------------CTCCGTGTCAGTTTTCCGGCTAG----------------T--------------------------------------------------------GCATCCAAAAGATAGTCTTGCTCCCAACAGGAGT---GCAGGTGGGG---GATTTTAA----------------TGAGCTAACTTC-GGCAA-----TTGGAGACTT-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................CTAAGAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002001010
...........GAAATGAAGTTGGCTAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
...................GTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.........................TAAGAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
...............................GTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
............AAATGAAGTTGGCTAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.............AATGAAGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
........................................CTACTTGGTGATTTGCCTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............ATGAAGTTGGCTAAGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
................GAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..........................AAGAAGTGCTCCACCTACTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................TGGCTAAGAAGTGCTCCACCTACTTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..............ATGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
............................GAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................AGAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TTGGAGACTT-TAAC--GATGAGC........2211.001010000
G----------GAAATGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.....................................CACCTACTTGGTGATTTGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........................................CTTGGTGATTTGCCTGGTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.111100000
droBip1
G----------GAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGCATA------TGATTCTG---CCA------------------------------------------------AGTTTTTGAGTT------------------T------------------------TC-CGTATCTTTGAGATAC----TTTTC--GCGA--------------GTGCCTGT-----ATG-TGTTTGTGTCTGCGCCGAAATGGCCATCAAAAAGCAGTGA-----TGGTGC----ATCATAATGGCGGAA--T----A----------GT------------------TATACTCCGTGTCAGTTTTCCGGCTAG----------------T--------------------------------------------------------GCATCCAAAAGATACTCTCGCTCCCGACAGGAGT---GCAGGTGTGG---GATTTTAA----------------TGAGCCAACTTT-GGCAA-----TTGGAGACTT-TAAC--GATGAGTAAC--TGGSizeHit CountTotal NormTotal
No Reads
dp5
A----------AAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGC-------TCTGAATATGGGGCTC---------------------------------------------A--ACT-TTTGAGTTGCTCCTCCTCC---TCCTC------------------------TT-CCTATCTTGAAGAAGC----C----------------------------------CGTGTG-TG--------------------------------CAGTAACCGACCCGTGC----ATCATAACAGCGATA--T----A----------GT-------------------------------------------AGTGGCATTACACTCAAGTGTATCCGCAGCAAAGGGGCAGTGGGAGTGGCCATGGCAGTGCAGTGTTGAAAAGGG-------------------------------------AGAGGTAGAG----GATGTAA----------------TGACCTAACTCC-GACCA-----TTGGAGACTT-TAAC--GATGACTAAC--TGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................CTACTTGGTGATATGCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0051400000000
...................GTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030300000000
..............................AGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
.................AAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000001000
..................AGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
............AAATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
..................AGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................CACCTACTTGGTGATATGCCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..............ATGAAGTTGGCTAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................CCTACTTGGTGATATGCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................GAAGTTGGCTAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................GAAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........AAAATGAAGTTGGCTAAGAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................GAAGTTGGCTAAGAAGTGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............AAATGAAGTTGGCTAAGAAGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................TGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................AAGTGCTCCACCTACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
droPer2
AACGAAAACAAAAAATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGGTGATATGCCTGGGTAAAGTTCTGC-------TCTGAATATGGGGCTC---------------------------------------------A--ACT-TTTGAGATGCTCCTCCTCCTCCTCCTC------------------------CT-CCTATCTTGAAGAAGC----C----------------------------------CGTGTG-TG--------------------------------CAGTAACCGACCCCTGC----ATCATAACAGCGATA--T----A----------GT-------------------------------------------AGTGGCATTACACTCAAGTGTATCCGCAGCAAGGGGGCAGTGGGAGTGGCCATGGCAGTGCAGTGTTGAAAAGGG-------------------------------------AGAGGTAGAG----GATGTAA----------------TGACCTAACTCC-GACCA-----TTGGAGACTT-TAAC--GATGACTAAC--TGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..CGAAAACAAAAAATGAAGTTGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.005500000
.....AAACAAAAAATGAAGTTGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2115.005500000
.............AATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.005500000
..............ATGAAGTTGGCTAAGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.004400000
...........AAAATGAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2913.003300000
............AAATGAAGTTGGCTAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAGGG-------------------------------------AGAGGTAGAG----GA............................................................................2312.002000002
.......ACAAAAAATGAAGTTGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.....AAACAAAAAATGAAGTTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
..........AAAAATGAAGTTGGCTAAGAAGTGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
......AACAAAAAATGAAGTTGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........CAAAAAATGAAGTTGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
....AAAACAAAAAATGAAGTTGGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGACTT-TAAC--GATGACTAAC--T..2311.001100000
................GAAGTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
........................................CTACTTGGTGATATGCCTGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...................................................................................................................................................................................................................................................................................................................CCCCTGC----ATCATAACAGCGATA--T----A----------GT-------------------------------------------AGT.........................................................................................................................................................................................................2911.001010000
....................................................ATGCCTGGGTAAAGTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
...................GTTGGCTAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................GATATGCCTGGGTAAAGTTCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droWil2
G----------GAAATGAAGTTGGCTAAGAAGTGTTCCACATACTTGGTGATATGCCTGGGTAACGTTGGCCTTA------AGATTAT------AAGCTGTGTAGGAGAGGAAGCAAGTGTGTGTGTGTGTGTCTAACAAAAGTTT-TTTGAGTA------------------CCATTTAAGAGAAGGTTTGATATTCAGACACAT-------ATAT----TTTTT--TT------------------TCATGTGCTGTGTG-TATTTGAGTGTGG---GAAATGCAGAT--------------CCCTCGATGA----ATCACTAGAAAGATA--T----C----------AT-------------------------------------------CCT----TTTTTTTACAGTGTTTTT------------------------------------------------------------------------------------------------------TCTCAGTGCATACATGGGTTAAAAATATGGGTAC-AACAT-----ATTAGGACTCATACC--TGTGAGTAACCGTGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............ATGAAGTTGGCTAAGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.................AAGTTGGCTAAGAAGTGTTCCACATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.............AATGAAGTTGGCTAAGAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..............................AGTGTTCCACATACTTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...............TGAAGTTGGCTAAGAAGTGTTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
...........GAAATGAAGTTGGCTAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................TTT------------------------------------------------------------------------------------------------------TCTCAGTGCATACATGGG...........................................................2111.00101000
................GAAGTTGGCTAAGAAGTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
droVir3
G----------AAAATGATGTGGCCCAAGAAGTGCTCCACCTACCTGGTGATATGTTTGGGTAAAGTTTTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................GGCCCAAGAAGTGCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000000000000000000000010000000000000000000000000000
.........................CAAGAAGTGCTCCACCTACCTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000001010
........................................CTACCTGGTGATATGTTTGGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..........................AAGAAGTGCTCCACCTACCTGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
.................................................GATATGTTTGGGTAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
..............ATGATGTGGCCCAAGAAGTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.............AATGATGTGGCCCAAGAAGTGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...................GTGGCCCAAGAAGTGCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
..............ATGATGTGGCCCAAGAAGTGCTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
............AAATGATGTGGCCCAAGAAGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................AAGTGCTCCACCTACCTGGTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................CCCAAGAAGTGCTCCACCTACCTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
-------------AATGATGTTGCTCAAGAAGTTCTCCACCTGTTTGATGATATGTCTGGGTAAAGTTT---ATG-TGATTTAAGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTG--------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTTTAG----------------TG-----------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................CACCTGTTTGATGATATGTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..........................AAGAAGTTCTCCACCTGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................TGCTCAAGAAGTTCTCCACCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................AGTTCTCCACCTGTTTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................TCCACCTGTTTGATGATATGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................CTCAAGAAGTTCTCCACCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................GCTCAAGAAGTTCTCCACCTGTTTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................AAGAAGTTCTCCACCTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...............................GTTCTCCACCTGTTTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........................CAAGAAGTTCTCCACCTGTTTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....................TGCTCAAGAAGTTCTCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................GAAGTTCTCCACCTGTTTGATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................AGAAGTTCTCCACCTGTTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................CCACCTGTTTGATGATATGTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
.......................................CCTGTTTGATGATATGTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.......................................CCTGTTTGATGATATGTCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
T----------AAAATGAAGTTGTCCAAGAAATGCTCCACCTATTTTCTGATATGTCTGGGTAAAGTTA---ATGCTTAT----AACAG---TTG------------------------------------------------AAG-AGTGTATG------------------GCAAGGA--------------------------------------------------------------------------------------------------------------------GCATAAT-----TTTAATATGCAACAAAGTGAC----TAAAAATTGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA---------TGTTGAA----------------TGACTAAACTCG-AATTA---AATCGAAAAGAA-AAGCCGTATGAGTAAC--AAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:58 PM