ID:

dsi_20106

 Coordinate:

2l:4661561-4661718 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.6 -7.2 -6.9

Flybase annnotation

exon [2l_4661719_4662048_+]; CDS [2l_4661719_4661776_+]; exon [2l_4661461_4661560_+]; CDS [2l_4661461_4661560_+]; intron [2l_4661561_4661718_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCAACTTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTTGAGCATGCTATTGATGTCTTGCTGTTTTGATGTTGTGTTCTAATCCCCTAACCGATGATGACACACCTCCACATCAGCCCCTGACTAATTAACGTTCTCTTTCTAAATGTATTTGCTTTGTGTACATGCCAAAAGCGCGATGCAGTCTCCCCACGTGAACATGCGGCCTTTATTGGGCAACTATG
**************************************************...............((((((...((((.((.......))..))))..)))))).....***************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 GSM343915
embryo
 M025
embryo
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR902009
testis
..........................................................................................CTTGCTGTTTTGATGTTGT..................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGAACATGCGGCCTTTATTGGGCAAC.... 26 0 1 2.00 2 0 0 0 0 0 1 1 0 0
..........................................................................................CTTGCTGTTTTGATGTTGTGTTCT................................................................................................................................................ 24 0 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................TGAGCATGCTATTGATGT........................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.........................................CACCTCGATGTACGTGAAT...................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................ATATTGAGTCGAGTTGAGCATGTT................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................CTATTGATGTCTTGCTGTTTTGATGTTGT..................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTGAACATGCGGCCTTTAT............ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................GTTATAATCCCCTAACCGATGATG............................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTACGCGAATATTGAGTCGAGTTG........................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................GCCCAGCGGGCCACATACCACACCTC................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........GAACATGTCACCTGCCCAGCGGGCCAC............................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAAATGTATTGGCGTTGTGT.............................................................. 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0
...........CATGTCACCTGCCCAGCGGGCCAC............................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................GTACGTGAATATTGAGTCGAG........................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................AATATTGAGTCGAGTTGAGC..................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TGTGTACATGCCAAAAGCGCGATGCA......................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................CTTGCTGTTTTGATGTTG...................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTCCCCACGTGAACATGC..................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................TGATGTCTTGCTGTTTTGATGT........................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................GATGTACGTGAATATTGAGTCGA............................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...AACTTGAACATGTCACCTGCCCAGCGGGC.................................................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................GTCTTGCTGTTTTGATGTTGT..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................GTTTTGATGTTGTGTTCT................................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GATTCTCCCCACGTGAACATGC..................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................GAGTCGAGTTGAGCATGCTATTGAT.......................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................TATTGAGTCGAGTTGAGC..................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTCTCCCCACGTGAACATGCGGC.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GGCGGCCTTGATTGGGCAA..... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GGCGGCCTTGCTTGGGCAAC.... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CGCCCCACTTGAACACGCGG................... 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0
........................................................................................GGCTTGTTGTTTTGATGTTGTA.................................................................................................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 1
.............................................TCGATGGACGTGAAT...................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 1 0 0 0
............................................................................................TGCTGTTTTGACGTT....................................................................................................................................................... 15 1 16 0.06 1 0 0 0 0 1 0 0 0 0
.......................................................................................................TCTTGTGTTCGAATCCC.......................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 1 0 0 0 0
..............GTGACTTGCCCAGTGGGCC................................................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................AATTAACGTTGTCTT.................................................................................... 15 1 19 0.05 1 0 0 0 0 1 0 0 0 0
...........................................................TATTGAGTGTGGTTGAGCA.................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0
......................................................................GTAGAGCATGCGATTGA........................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0
..............................................................................TGCTAGTGATGTCTGGGTG................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

CCGTTGAACTTGTACAGTGGACGGGTCGCCCGGTGTATGGTGTGGAGCTACATGCACTTATAACTCAGCTCAACTCGTACGATAACTACAGAACGACAAAACTACAACACAAGATTAGGGGATTGGCTACTACTGTGTGGAGGTGTAGTCGGGGACTGATTAATTGCAAGAGAAAGATTTACATAAACGAAACACATGTACGGTTTTCGCGCTACGTCAGAGGGGTGCACTTGTACGCCGGAAATAACCCGTTGATAC
*****************************************************************************************************************************************************...............((((((...((((.((.......))..))))..)))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
...........................................................................................................................................GAGGTGTAGTCGGGGACTGATTAAT.............................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................................................CTACGTCAGAGGTGTGAACTGGT........................ 23 3 1 1.00 1 1 0 0 0 0 0
..................GGACGGGTCGCCCGGTGTATAGTGT....................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
..................................GTATGGTGTGGAGCTACATGC........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
................................................................................................CAAAACTACAACACAAGATTAGGGGAT....................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................................................................CGCGCTACGTCACGGGGGTGCACTTGT........................ 27 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................AAGATTAGGGGATTGGCTACTA.............................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................CTACAACACAAGATTAGGGGAT....................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................CAACACAAGATTAGGGGATTGGCT.................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................TGGAGGTGTAGTCGGGGACTGATT................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................GTGTGGAGGTGTAGTCGGGG........................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................CTGATTAATTGCAAGAGAAAGATTT.............................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................TGATTAATTGCAAGAGAAAGATTTACAT.......................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TCGCGCTACGTCACGGGGGTGCACTTGT........................ 28 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TTGCAAGAGAAAGATTTACAT.......................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................AGTGGAGGTGTAGTCGGGGA....................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0
....................................................................................................................AGGGGATTGGCTACTACTGTGTGGAG.................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................TCAGAGGTCTGCACTTG......................... 17 2 3 0.33 1 0 0 0 0 1 0
....................................................................................................................................................................................................TGTTCGGTTGTCGCGATACGT......................................... 21 3 4 0.25 1 1 0 0 0 0 0
.....................................................................................................................GGGGACTGGCTACTA.............................................................................................................................. 15 1 8 0.13 1 0 0 0 0 1 0
...........................................................................TGTACGATAACTACA........................................................................................................................................................................ 15 1 13 0.08 1 0 0 0 0 1 0
...............................................................................................................................................TGTAGTCGGGGAGGGA................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0
...................................................................................................................................................................................................................................AACTTGTACGCTGGAA............... 16 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:4661511-4661768 + dsi_20106 GGCAACTTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGCT-----------GTT--TTGATGTTGTGTTCTAATCCC-----------------------CTAACC-----G----------ATGATGACACACCTC--CACATCA-----------G----------------------------------------------------C---CCCTGACTAATT---AACGTTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTCT---CCCCACGTGAACATGCGGCCTTTATTGGGCAACTAT-------G
droSec2 scaffold_5:2936640-2936897 + GGCAACTTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGCT-----------GTT--TTGATGTTGCGTTCTAATCCC-----------------------CTATCC-----G----------ATGATGACACACCTC--CACATCA-----------G----------------------------------------------------C---CCCTGACTAACT---AACGTTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCCACGTGAACATGCGGCCTTTATTGGGCAACTAT-------G
dm3 chr2L:4840934-4841185 + GGCAACTTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGCTGTT---------------------GTGTTCTAATCCC-----------------------ATATCC-----G----------ATGATGACACTTCTC--CACTTCA-----------G----------------------------------------------------C---CCCTGACTAATT---AACGTTC-TTTTTCTAAATGTA------TATTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CGCCACATGAACAGGCGGCCTTTATTGGGCAACTAT-------G
droEre2 scaffold_4929:4921959-4922205 + GGCAACTTGAACATGTCACCTGCCCAGCGGGCAACATATCACACCTCGATGTACGTGAATATTGATTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGATGTT---------------------GTGTTCTAATCCC-----------------------CTATC------------------TGATGACACACCTC--CACATCA-----------G----------------------------------------------------C---CCCTGACTAATT---AACATTC-TTTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCCATGTGAACAGACGGCCTTTATTGGGCAACTAT-------G
droYak3 2L:4851014-4851268 + GGCAACTTGAACATGTCACCTGCTCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCAATT---------------GGTGTCTTGAT-----------GTT--TTGATGTTGTGTTCTAATCCC-----------------------CTATC------------------TGATGACACACCGC--CACAACA-----------G----------------------------------------------------C---CCCTGACTAATT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCCACGTGAACAGACGGCCTTTATTGGGCAACTAT-------G
droEug1 scf7180000409005:719477-719722 + GGCAACCTGAATATGTCACCTGGCCAACGGGCCACATATCACACATCGATGTACGTGAATATTGAATCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGGTGTT---------------------GTATTCTAATCCC------------------------TATC------------------CGATGACACACCTC--CACATTA-----------G----------------------------------------------------A---CACTGACTAATT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAATGC---CCCTTCGTGAACAGACGGCCTTTATTGGGCAACTAA-------G
droBia1 scf7180000302188:1415100-1415338 + GGCAACCTGAACATGTCGCCCGCCCAGAGGTCCACATATCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GGTGTCTTGATGTT---------------------GTGTTGTAATCCC-----------------------ATA--------------------CGATGACACCCCTC--CACAT------------------------------------------------------------------------CTGACTAATC---AACCTTC-TCTTTCCAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCTTCGTGAACAGGCGGCCTTTGTTGGGCAACTGA-------G
droTak1 scf7180000415705:139614-139844 + GGCAATTTGAACATGTCACCTGCTCAGCGGGCCACCTATCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGATGTT---------------------GTGTTCTAATCCC-----------------------CTATC------------------TGATGACACAC----------------------------------------------------------------------------------------AATT---AACGTTT-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCCAAAA--A--------------AAAGCGCGATGCAGTGC---CCCTTCGTGAACAGACGGCCTTTATTGGGCAACCGA-------G
droEle1 scf7180000491046:2495706-2495945 + GGCAACTTGAATATGTCACCTGCCCAGAGGGCCACATATCACACATCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGATGTT---------------------GTGCAC-----------------------------------------------------TGATGACACACCTCCCCACATCA-----------G----------------------------------------------------TCCCTCCTGACTAATT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCATTCGTGAATCGACGGCCTTTATTGGGCAACTAA-------G
droRho1 scf7180000768274:17660-17909 - GGCAACTTAAATATGTCACCTGCCCAGCGGGCCACATATCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGATGTT---------------------GTGCACTAAACCC-----------------------ATATC------------------TGATGACACACCTC--CACATCA-----------G----------------------------------------------------ACTCCCCTGACTAATT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCTTCGTGAATCGACGGCCTTTATTGGGCAACTAA-------G
droFic1 scf7180000453842:1414036-1414286 - GGCAATCTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTAT-------------ATTGATGTCTTGATGTT---------------------GTGTACTAATCCC-----------------------ATATC------------------TGATGACAAACCTTCCTGCATCA-----------G----------------------------------------------------T---CACTGACTAACT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCTTTGTGAATCGACGGCCTTTATTGGGCAACTAA-------G
droKik1 scf7180000302472:3520505-3520752 + GGCAACCTGAACATGTCACCTGCCCAGCGGGCCACATATCACACCTCGATGTATGTGAATATTGAGTCGAGTT-------------------ACGCATGCCATT---------------GATGTCTTGATGTT---------------------GTACT---ATCCT-----------------------TTATC------------------TG---------TTT--CGGATTA-----------G----------------------------------------------------A---ATCAGACTAATT---AACCTTC-TTTTTTCAAATGTATATATATATTTGCTTT-CGTATTTATGCC---A-----------------AAAGCTCAATGCAGTGC---CCCTTTGTGAACCGGCGGCCTTTATTGGGCAACTAAAA---GTG
droAna3 scaffold_12916:9410965-9411218 + GGCAACCTGAACATGTCCCCCGCCCAGCGATCCACATATCACACCTCGATGTATGTGAATATTGAGTCAAGTTGATCT------G--G--TTGAGCATGCTATT---G---------TTGATGTCTTGGTGTT---------------------GTGTATTTATCCC-----------------------CATTCCTGTCCGTTTGCATGTGACG--GG--CACTCT--GTCATCA-----------G---------------------------------------------------TC---CCCCGACTAATT---ATCATTC-TCTTTCCAAACG------------------------------C---A-----------------AAAGCTCAATGCAGAGC---CCATTCGTGGACCGTCGGCCTCTTTTGGGCAGCCAA-------G
droBip1 scf7180000396535:1978152-1978377 + GGCAACCTGAACATGTCCCCTGCCCAACGGTCCACATACCACACCTCGATGTATGTGAATATTGAGTCAAGTTGATCT------G--C--TTGAGCATGCTATT------------ATTGATGTCTTGGTGTT---------------------GTGTATTTATCCC-----------------------CATTCC-----------------TG---AC-------------CCA-----------G----------------------------------------------------A---CACTGACTAATT---ATCATTC-TCTTTCTAAACG------------------------------C---A-----------------AAAGCTCAATGCAGAGC---CCATTCGTGGATCGACGGCCTCTTTTGGGCAGCCAA-------G
dp5 4_group3:3605384-3605675 + GGCAATTTGAATATGTCGCCAGCACAGCGGGCCACGTATCACACATCGATGTACGTGAATATTGAGTCGAGTTGATTGATGTTTGATGTACTGAGCATGCTATT---GATTGATTAATTGATGTCTTGACGTTGTATTG---------------GTGTCTTTATCTC-----TATTGTATATGTAT----GTCTC------------------TGATGTCGCAT--------------------------------------------------------------------------------CACTGATTAATT---GCCATTC-TCTTTCTAAATGTA--------TTTACTCTTCGTACCAAAACC---A-----------------AAAGCTCAATCCGACGC---GCAACTGTGGATCGACGGCCTCTTTTGGGCCACTAAAA---ATG
droPer2 scaffold_1:5084865-5085156 + GGCAATTTGAATATGTCGCCAGCACAGCGGGCCACGTACCACACATCGATGTACGTGAATATTGAGTCGAGTTGATTGATGTTTGATGTACTGAGCATGCTATT---GATTGATTAATTGATGTCTTGACGTTGTATTG---------------GTGTCTTTATCTC-----TATTGTATATGTAT----GTCTC------------------TGATGTCGCAT--------------------------------------------------------------------------------CACTGATTAATT---GCCATTC-TCTTTCTAAATGTA--------TTTACTCTTCGTACCAAAACC---A-----------------AAAGCTCAATCCGACGC---GCAACTGTGGATCGACGGCCTCTTTTGGGCCACTAAAA---ATG
droWil2 scf2_1100000004585:1733411-1733684 - dwi_1632 GGCAATTTGAATATGTCGCCAACCCAACGAGCCACATATCATACATCGATGTACGTTAATATTGAGTCTAGTT-------------------GAT------------------------GTTGTGTTGATG------------------------TGTGTAAATGTT-----------------------ATA--------------------------------------GGTAT-----------TAATCGTCTAAATTTACTCTCTTTTTTTATGCCTGATTACTCTTAAAAAAAAAA---AACCGAATATTT---ATATTTT-TTTTTATTCAAAT--------------------------A--A---A--ATCTTGTATTCCTTTTAAGATCAACGCAACGGCGTGGCATTTTGGATCGAAGGCCTCTATTGGGCAATTGAAC--TATG
droVir3 scaffold_13246:2242665-2242917 + GGCAATCTGAACATGTCGCCGGCACAGCGGGCCACATATCATACATCCATGTACGTGAATATTGAATCTAGTTGATGG------T--G--TT---CAGACTATAGTACAT---------GTTGTATTGGT-----------GTTTATTGATATTGTGCGT----------------------GT--------------------------------------ATTAC--TATATAGATCGCTGAGC-----------------------------------------------AGCTA-GC---ATTTTACTAATTCTGTAAAATCTCTCTTTCAA-----------------------------ATGCCAACA-----------------AAAGCCTCACTAAACGC---GGCACTACGGATCGACGGCCTCTATTGGGCAACTAA-------G
droMoj3 scaffold_6500:26351636-26351894 + GGCAATCTGAATATGTCGCCGGCACAGCGTGCCACCTACCATACTTCCATGTACGTGAATATTGAGTCTAGTTGATCG------T--A--TT---CAATCTATA---------------CATGTTGTATTGGT---------------------GTATATTGATTATATATGTATTGTGTGTGT---------------------GCAT--------------------TATATAGATTG----------------------------------------------GACTTGAAACAA-TC---ATTTCACTAATC-TGTACAATCTTTTTTTCAAAT----------------------------CGTCAACA-----------------AAAGCTTAACACAGCGT---GGCACTACGGATCGACGGCCTCTATTGGCCAATTAA-------A
droGri2 scaffold_15126:3727713-3727978 - GGCAATCTGAATATGTCGCCGGCTCAGCGTGCCACATATCATACATCAATGTACGTGAATATTGAGTCTAGTTC----------------GTGAGCAAGCTATT---GAT---------GTTGTGT-----GTGTATTGGTGTA--TTGATATTGTGTGTGTATCTA------------------AAACTATATT------------------------------TT--C---------GCCGGTTGG---------------------------------------------TTCGA-GC---ATTTAACTAATC-TCTACATTCTTCTTTCCGAA----------------------------ATGCTAACGAAA--------------GAAGCTCAACGCATCGG---CGCACTTTGGATCGACGGCCTCTATTGGGCAAATAAAGAATATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCAACTTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGCT-----------GTT--TTGATGTTGTGTTCTAATCCC-----------------------CTAACC-----G----------ATGATGACACACCTC--CACATCA-----------G----------------------------------------------------C---CCCTGACTAATT---AACGTTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTCT---CCCCACGTGAACATGCGGCCTTTATTGGGCAACTAT-------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................CTTGCT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................1912.00200000000000200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACATGCGGCCTTTATTGGGCAAC...........2612.00200000001001000000
............................................................................................................................CTTGCT-----------GTT--TTGATGTTGTGTTCT......................................................................................................................................................................................................................................................................................................2412.00200110000000000000
........................................................................T-------------------GAGCATGCTATT---------------GATGT...........................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.........................................CACCTCGATGTACGTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
...................................................................................................CTATT---------------GATGTCTTGCT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................2911.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACATGCGGCCTTTAT...................1911.00100010000000000000
.....................GCCCAGCGGGCCACATACCACACCTC........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
........GAACATGTCACCTGCCCAGCGGGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...........CATGTCACCTGCCCAGCGGGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..................................................GTACGTGAATATTGAGTCGAG................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.........................................................AATATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................TGTGTAC--ATGCC---A-----------------AAAGCGCGATGCA...................................................2611.00100010000000000000
............................................................................................................................CTTGCT-----------GTT--TTGATGTTG............................................................................................................................................................................................................................................................................................................1811.00100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................CT---CCCCACGTGAACATGC............................1811.00100010000000000000
.......................................................................................................T---------------GATGTCTTGCT-----------GTT--TTGATGT..............................................................................................................................................................................................................................................................................................................2211.00100000000000100000
...............................................GATGTACGTGAATATTGAGTCGA.................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
...AACTTGAACATGTCACCTGCCCAGCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
..........................................................................................................................GTCTTGCT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.............................................................................................................................................GTT--TTGATGTTGTGTTCT......................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................................................GAGTCGAGTT-------------------GAGCATGCTATT---------------GAT.............................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
...........................................................TATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GTCT---CCCCACGTGAACATGCGGC.........................2311.00100010000000000000
droSec2
GGCAACTTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGCT-----------GTT--TTGATGTTGCGTTCTAATCCC-----------------------CTATCC-----G----------ATGATGACACACCTC--CACATCA-----------G----------------------------------------------------C---CCCTGACTAACT---AACGTTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCCACGTGAACATGCGGCCTTTATTGGGCAACTAT-------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................ATATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................1914.0040130
.............................................................................................................................TTGCT-----------GTT--TTGATGTTGCGTTCTA.....................................................................................................................................................................................................................................................................................................2411.0010010
............................................................ATTGAGTCGAGTT-------------------GAGCATGCT..................................................................................................................................................................................................................................................................................................................................................................2211.0010010
....................................................................................................................................................................................................................................................................................................................................................A--------TTTGCTTTGTGTAC--ATGCC---A-----------------A...............................................................2211.0011000
............ATGTCACCTGCCCAGCGGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...............................................................................................................................................T--TTGATGTTGCGTTCTAATCC.................................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................................................................................................................................................................................................................................................................A--------TTTGCTTTGTGTAC--ATGCC---A-----------------AA..............................................................2311.0010010
..................................................................................................................................................TTGATGTTGCGTTCTAAT...................................................................................................................................................................................................................................................................................................1811.0011000
............................................................................................................................................................GTTCTAATCCC-----------------------CTATCC-----G----------ATG................................................................................................................................................................................................................................................2111.0011000
.............................................................................................................................................................................................................................................................................................................................................................................ATGCC---A-----------------AAAGCGCGATGC....................................................1811.0010001
............................................................................................................................CTTGCT-----------GTT--TTGATGTTGCGTTCTAA....................................................................................................................................................................................................................................................................................................2611.0010100
.......TGAACATGTCACCTGCCCAGCGGGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
.......................................................................................................................GATGTCTTGCT-----------GTT--TTGATGTTGCGT.........................................................................................................................................................................................................................................................................................................2611.0010010
.......................................................................................................T---------------GATGTCTTGCT-----------GTT--TTGATGTTG............................................................................................................................................................................................................................................................................................................2411.0010010
........................................................................................................................ATGTCTTGCT-----------GTT--TTGATGTT.............................................................................................................................................................................................................................................................................................................2111.0010010
dm3
GGCAACTTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGCTGTT---------------------GTGTTCTAATCCC-----------------------ATATCC-----G----------ATGATGACACTTCTC--CACTTCA-----------G----------------------------------------------------C---CCCTGACTAATT---AACGTTC-TTTTTCTAAATGTA------TATTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CGCCACATGAACAGGCGGCCTTTATTGGGCAACTAT-------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................TATT---------------GATGTCTTGCTGTT---------------------GT...........................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TGTAC--ATGCC---A-----------------AAAGCGCGATGCAGT.................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ATGCC---A-----------------AAAGCGCGATGCAGTGC---CGC.........................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ATT---------------GATGTCTTGCTGTT---------------------GT...........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CACACCTCGATGTACGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CCACATACCACACCTCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ATATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..................................................................TCGAGTT-------------------GAGCATGCTATT---------------GATGT...........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TA------TATTTGCTTTGTGTAC--ATGCC---A-----------------AAA.............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ATGCC---A-----------------AAAGCGCGATGCA...................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................CATACCACACCTCGATGTACGTGAATATGCC......................................................................................................................................................................................................................................................................................................................................................................................................3111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TTCA-----------G----------------------------------------------------C---CCCTGACTAATT---AACGTTC-TTT.............................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ATATCC-----G----------ATGATGACACTTCT.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................A-----------------AAAGCGCGATGCAGTGC---CG..........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TATTGAGTCGAGTT-------------------GAGCATGCTAT................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TCTTGCTGTT---------------------GTGTTCTAATCCC-----------------------.........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................C--CACTTCA-----------G----------------------------------------------------C---CCCTGACT...............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CCCTGACTAATT---AACGTTC-TTTT............................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGCC---A-----------------AAAGCGCGATGCAGTGC---CG..........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCTTTATTGGGCAAC...........1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CACATGAACAGGCGGCCTTTATTGG................2511.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CTGTT---------------------GTGTTCTAATCCC-----------------------AT.......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ATGCTATT---------------GATGTCTTGCTGTT---------------------.............................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................T---------------GATGTCTTGCTGTT---------------------GTGT.........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................GAATATTGAGTCGAGTT-------------------GAGCA......................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCGATGTACGTGAATATTGAGTCGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................GTACGTGAATATTGAGTC...................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................A------TATTTGCTTTGTGTAC--ATGCC---A-----------------................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................TGCC---A-----------------AAAGCGCGATGCAGTGC---C...........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AC--ATGCC---A-----------------AAAGCGCGATG.....................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTACGTGAATATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................CATACCACACCTCGATGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGAATATTGAGTCGAGTT-------------------GAGCATGC...................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................................................................TTGCTGTT---------------------GTGTTCTAATCC.................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........ACATGTCACCTGCCCAGCGGGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................ATATTGAGTCGAGTT-------------------GAGA.......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GTA------TATTTGCTTTGTGTAC--A.........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TT---------------GATGTCTTGCTGTT---------------------GTGTTCT......................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................ATTGAGTCGAGTT-------------------GAGCATGC...................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTTTATTGGGCAACT..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................A------TATTTGCTTTGTGTAC--ATGC......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.......................................................................................................T---------------GATGTCTTGCTGTT---------------------GTGTTCT......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCCACATGAACAGGCGGCCTTTA....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TACGTGAATATTGAGTCGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................A------TATTTGCTTTGTGTAC--ATGCC---A-----------------AA..............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................GTCTTGCTGTT---------------------GTGTTCTA.....................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................AATATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGGCGGCCTTTATTGGGCAA............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCATGCTATT---------------GATGTCTTGCTGTT---------------------GT...........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GATGTACGTGAATATTGAGTC...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................CC-----------------------ATATCC-----G----------ATGATGACACT........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCCTTTATTGGGTG.............1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droEre2
GGCAACTTGAACATGTCACCTGCCCAGCGGGCAACATATCACACCTCGATGTACGTGAATATTGATTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGATGTT---------------------GTGTTCTAATCCC-----------------------CTATC------------------TGATGACACACCTC--CACATCA-----------G----------------------------------------------------C---CCCTGACTAATT---AACATTC-TTTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCCATGTGAACAGACGGCCTTTATTGGGCAACTAT-------GSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................ATGCTATT---------------GATGTCTTGATGTT---------------------GT...........................................................................................................................................................................................................................................................................................................2415.0050001130
..................................................GTACGTGAATATTGATTCGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2215.0051000310
....................................................................................................TATT---------------GATGTCTTGATGTT---------------------GT...........................................................................................................................................................................................................................................................................................................2014.0041000030
.....................................................................................................ATT---------------GATGTCTTGATGTT---------------------GT...........................................................................................................................................................................................................................................................................................................1913.0030001020
..............................GCAACATATCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2612.0021000100
............................................................ATTGATTCGAGTT-------------------GAGCATGC...................................................................................................................................................................................................................................................................................................................................................................2112.0021000100
...................................ATATCACACCTCGATGTACGTG..............................................................................................................................................................................................................................................................................................................................................................................................................2212.0022000000
..................................................GTACGTGAATATTGATTCGA.................................................................................................................................................................................................................................................................................................................................................................................................2012.0021000100
................................AACATATCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2412.0022000000
..........................................................ATATTGATTCGAGTT-------------------GAGCATGCT..................................................................................................................................................................................................................................................................................................................................................................2412.0020000200
.............................................................................................................................................................TTCTAATCCC-----------------------CTATC------------------TGATGACACACCT.....................................................................................................................................................................................................................................2811.0011000000
....................................................................................................TATT---------------GATGTCTTGATGTT---------------------.............................................................................................................................................................................................................................................................................................................1811.0010000010
............ATGTCACCTGCCCAGCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
................................AACATATCACACCTCGATGTACGTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
............................................................................................................................................................................................................................................................................................................................................CTAAATGTA--------TTTGCTTTGTGTAC--A.........................................................................................2411.0011000000
.......................................................................................................................................................................................................................................CATCA-----------G----------------------------------------------------C---CCCTGACTAATT---AAC.....................................................................................................................................2211.0011000000
.........................................................AATATTGATTCGAGTT-------------------GAGCATGC...................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................................................................................................GCTATT---------------GATGTCTTGATGTT---------------------GTGTTCT......................................................................................................................................................................................................................................................................................................2711.0010000010
..................................................................................................................................................................................................................................................................................................................................ATTC-TTTTTCTAAATGTA--------TTTGCTTTGT................................................................................................2811.0010100000
...............................CAACATATCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
........................................................................T-------------------GAGCATGCTATT---------------GATGTCTTGATGT...................................................................................................................................................................................................................................................................................................................................2611.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................C--ATGCC---A-----------------AAAGCGCGATGCAGTGC---............................................2411.0011000000
........................................ACACCTCGATGTACGTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.........AACATGTCACCTGCCCAGCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...................................................................................................................................................................................................................................................................................................................................................TA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAG............................................................2611.0010000010
...............................................................................................................................GATGTT---------------------GTGTTCTAATCC.................................................................................................................................................................................................................................................................................................1811.0010000010
....................................................................................................................................................................................................................................................................................................................................................A--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCG..........................................................2711.0010000100
........................................................................................................................................................................................................................................ATCA-----------G----------------------------------------------------C---CCCTGACTAATT---AACATT..................................................................................................................................2411.0011000000
.................................................................................................TGCTATT---------------GATGTCTTGATGT...................................................................................................................................................................................................................................................................................................................................2011.0010001000
.....................................ATCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..............................................................................................................................................................................................CTATC------------------TGATGACACACCTC--CAC...............................................................................................................................................................................................................................2211.0011000000
..................................................GTACGTGAATATTGATTCGAGTG-------------------...........................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..................................................................................................................................................................................................................................................................................................................................................GTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------A...............................................................2411.0010000100
........................................................................................................................ATGTCTTGATGTT---------------------GTGTTCTA.....................................................................................................................................................................................................................................................................................................2111.0010000100
...................................................................................................................................................................................................................................................................................................................................................................TTGTGTAC--ATGCC---A-----------------AAAGCGC.........................................................2111.0010000100
...............................................GATGTACGTGAATATTGATTC...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.................................ACATATCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000
....................................TATCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000
...................................................................................................CTATT---------------GATGTCTTGATGTT---------------------GT...........................................................................................................................................................................................................................................................................................................2111.0010000010
.................................................................................................TGCTATT---------------GATGTCTTGATGTT---------------------GT...........................................................................................................................................................................................................................................................................................................2311.0010000010
..........................................................................................................................................................GTGTTCTAATCCC-----------------------CTATC------------------T.................................................................................................................................................................................................................................................1911.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGCCTTTATTGGGCAACT..........2211.0011000000
.........................................CACCTCGATGTACGTGAATATTGATT....................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
....................................................................................................TATT---------------GATGTCTTGATGTT---------------------GTGTTC.......................................................................................................................................................................................................................................................................................................2411.0010000010
.....CTTGAACATGTCACCTGCCCAGCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
....................................................................................................................................................................................................................................................................................................................................................A--------TTTGCTTTGTGTAC--ATGCC---A-----------------A...............................................................2211.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................GATGCAGTGC---CCCCATGTGAACAG..............................2411.0011000000
....................................................................................................TATT---------------GATGTCTTGATGTT---------------------GTGTT........................................................................................................................................................................................................................................................................................................2311.0010000010
..................................................................................................GCTATT---------------GATGTCTTGATGTT---------------------GT...........................................................................................................................................................................................................................................................................................................2211.0011000000
...................................................................................................................................................................................................................................................................................................................................................TA--------TTTGCTTTGTGTAC--ATGCC---A-----------------A...............................................................2311.0011000000
..................................................GTACGTGAATATTGATTCGAG................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...............................CAACATATCACACCTCGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
......................................................................GTT-------------------GAGCATGCTATT---------------GATGTCTTGAT.....................................................................................................................................................................................................................................................................................................................................2611.0010000100
............................................................................................................................................................GTTCTAATCCC-----------------------CTATC------------------TGATGACAC.........................................................................................................................................................................................................................................2511.0010000010
..................................................................................................................................GTT---------------------GTGTTCTAATCCC-----------------------CTATC------------------TGAT..............................................................................................................................................................................................................................................2511.0010000010
...................................ATATCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
......................................................GTGAATATTGATTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
....................................................................................................................................T---------------------GTGTTCTAATCCC-----------------------CTATC------------------TGAT..............................................................................................................................................................................................................................................2311.0011000000
droYak3
GGCAACTTGAACATGTCACCTGCTCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCAATT---------------GGTGTCTTGAT-----------GTT--TTGATGTTGTGTTCTAATCCC-----------------------CTATC------------------TGATGACACACCGC--CACAACA-----------G----------------------------------------------------C---CCCTGACTAATT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCCACGTGAACAGACGGCCTTTATTGGGCAACTAT-------GSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................GAATATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................2113.00302000010000
...............................................GATGTACGTGAATATTGAGT....................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
.......................................................................................................................GGTGTCTTGAT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................2412.00200100010000
..........................................................................................................................................................GTGTTCTAATCCC-----------------------CTATC------------------TGATGACA..........................................................................................................................................................................................................................................2612.00200000000002
............................................................................................................................CTTGAT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................1912.00200000020000
....................................................ACGTGAATATTGAGTCGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
.......................................................................................................................................................................................................................................................................................................................................................................GTAC--ATGCC---A-----------------AAAGCGCGATGC....................................................2212.00201000100000
..........................................................................................................................GTCTTGAT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................AATT---------------GGTGTCTTGAT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................2811.00100000010000
....................................................................................................................................................................CCC-----------------------CTATC------------------TGATGACACACCGC--CACAA.............................................................................................................................................................................................................................2711.00101000000000
..................................................................................................GCAATT---------------GGTGTCTTGAT-----------GTT--TTGATGT..............................................................................................................................................................................................................................................................................................................2711.00101000000000
...............................................................................................................................................................CTAATCCC-----------------------CTATC------------------TGATGACACACCGC--..................................................................................................................................................................................................................................2711.00100000010000
....................................TACCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
............................................................ATTGAGTCGAGTT-------------------GAGCATGCAATT---------------................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.............TGTCACCTGCTCAGCGGGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..................................................................................................................................................................ATCCC-----------------------CTATC------------------TGATGACACACCGC--C.................................................................................................................................................................................................................................2511.00101000000000
..................................................GTACGTGAATATTGAGTCG..................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..................................................GTACGTGAATATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................TC------------------TGATGACACACCGC--CACAAC............................................................................................................................................................................................................................2211.00110000000000
....................................................................................................AATT---------------GGTGTCTTGAT-----------GTT--TTGATGTTG............................................................................................................................................................................................................................................................................................................2711.00101000000000
..........................................................ATATTGAGTCGAGTT-------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.................................................................GTCGAGTT-------------------GAGCATGCAATT---------------................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................GTACGTGAATATTGAGTCGAGTT-------------------G..........................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................ATGCC---A-----------------AAAGCGCGATGCAGTGC---............................................2311.00101000000000
...............................................GATGTACGTGAATATTGAGTC...................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............................................................TTGAGTCGAGTT-------------------GAGCATGC...................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......................................................................GTT-------------------GAGCATGCAATT---------------GGTGTCTTGAT-----------..........................................................................................................................................................................................................................................................................................................................2611.00100000010000
................................CACATACCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................................................................................................................................................................................................................................................................................................................................ACATTC-TCTTTCTAAATGTA--------TTTGCTT...................................................................................................2711.00101000000000
...............................................................................................................................................................................................................................................................................................................................................AATGTA--------TTTGCTTTGTGTAC--..........................................................................................2011.00100000010000
...............................................GATGTACGTGAATATTGAGTCGA.................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................................................................................................ATGCAATT---------------GGTGTCTTGAT-----------..........................................................................................................................................................................................................................................................................................................................1911.00101000000000
............................................................................................................................................................GTTCTAATCCC-----------------------CTATC------------------TGAT..............................................................................................................................................................................................................................................2011.00101000000000
........................................................................................................................................................................................................................................AACA-----------G----------------------------------------------------C---CCCTGACTAATT---AACATT..................................................................................................................................2411.00101000000000
.............................................................TTGAGTCGAGTT-------------------GAGCATGCAATT---------------GGTGT...........................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.......................................................................................................T---------------GGTGTCTTGAT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................2511.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................TTGCTTTGTGTAC--ATGCC---A-----------------AAA.............................................................2211.00101000000000
...................................................................CGAGTT-------------------GAGCATGCAATT---------------GGTGTCTTGAT-----------..........................................................................................................................................................................................................................................................................................................................2911.00100000010000
.................ACCTGCTCAGCGGGCCACATAC................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
......................................................GTGAATATTGAGTCGAGTT-------------------GAGCA......................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................................................................................................................................................................................................................................................................................................................................GTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------................................................................2311.00100000010000
....ACTTGAACATGTCACCTGCTCAGCGGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
..................................................................................................................................................................................................................................................................................................................CTGACTAATT---AACATTC-TCTTTCTAA.......................................................................................................................2611.00101000000000
...............................................GATGTACGTGAATATTGAGTCGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
................................................ATGTACGTGAATATTGAGTCGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................................GTACGTGAATATTGAGTCGAGTT-------------------GA.........................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...........................................................................................................................................................................................................................................A-----------G----------------------------------------------------C---CCCTGACTAATT---AACATTC-TCT.............................................................................................................................2511.00101000000000
..........................................................................................................................................................................................................................................CA-----------G----------------------------------------------------C---CCCTGACTAATT---AAC.....................................................................................................................................1911.00101000000000
........................CAGCGGGCCACATACCACACCTC........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.......................................................................................................................................................GTTGTGTTCTAATCCC-----------------------CTATC------------------TGATGA............................................................................................................................................................................................................................................2711.00101000000000
............................................................................................................................................................GTTCTAATCCC-----------------------CTATC------------------TGATGACA..........................................................................................................................................................................................................................................2411.00101000000000
.......................................................................................................................GGTGTCTTGAT-----------GTT--TTGAT................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................................GAATATTGAGTCGAGTT-------------------GA.........................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..................................................................................................................................................................................................................................................................................................................................................GTA--------TTTGCTTTGTGTAC--ATGC......................................................................................2111.00101000000000
..................................................................................................................................................................................................................................................................................................................................................GTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAG............................................................2711.00100000010000
..........................................................................................................................GTCTTGAT-----------GTT--TTGATGTTGTGTT........................................................................................................................................................................................................................................................................................................2411.00100100000000
..................................................................................................................................................................................................C------------------TGATGACACACCGC--CACAACA-----------................................................................................................................................................................................................................2211.00101000000000
....................................................................GAGTT-------------------GAGCATGCAATT---------------GGTGT...........................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...................................ATACCACACCTCGATGTACGT...............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............................................................................................................................TTGAT-----------GTT--TTGATGTTGT...........................................................................................................................................................................................................................................................................................................1820.50101000000000
.........................................................................................................................TGTCTTGAT-----------GTT--TTGATGT..............................................................................................................................................................................................................................................................................................................1930.33100000010000
droEug1
GGCAACCTGAATATGTCACCTGGCCAACGGGCCACATATCACACATCGATGTACGTGAATATTGAATCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGGTGTT---------------------GTATTCTAATCCC------------------------TATC------------------CGATGACACACCTC--CACATTA-----------G----------------------------------------------------A---CACTGACTAATT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAATGC---CCCTTCGTGAACAGACGGCCTTTATTGGGCAACTAA-------GSizeHit CountTotal NormTotal
No Reads
droBia1
GGCAACCTGAACATGTCGCCCGCCCAGAGGTCCACATATCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GGTGTCTTGATGTT---------------------GTGTTGTAATCCC-----------------------ATA--------------------CGATGACACCCCTC--CACAT------------------------------------------------------------------------CTGACTAATC---AACCTTC-TCTTTCCAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCTTCGTGAACAGGCGGCCTTTGTTGGGCAACTGA-------GSizeHit CountTotal NormTotal
No Reads
droTak1
GGCAATTTGAACATGTCACCTGCTCAGCGGGCCACCTATCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGATGTT---------------------GTGTTCTAATCCC-----------------------CTATC------------------TGATGACACAC----------------------------------------------------------------------------------------AATT---AACGTTT-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCCAAAA--A--------------AAAGCGCGATGCAGTGC---CCCTTCGTGAACAGACGGCCTTTATTGGGCAACCGA-------GSizeHit CountTotal NormTotal
No Reads
droEle1
GGCAACTTGAATATGTCACCTGCCCAGAGGGCCACATATCACACATCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGATGTT---------------------GTGCAC-----------------------------------------------------TGATGACACACCTCCCCACATCA-----------G----------------------------------------------------TCCCTCCTGACTAATT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCATTCGTGAATCGACGGCCTTTATTGGGCAACTAA-------GSizeHit CountTotal NormTotal
No Reads
droRho1
GGCAACTTAAATATGTCACCTGCCCAGCGGGCCACATATCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTATT---------------GATGTCTTGATGTT---------------------GTGCACTAAACCC-----------------------ATATC------------------TGATGACACACCTC--CACATCA-----------G----------------------------------------------------ACTCCCCTGACTAATT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCTTCGTGAATCGACGGCCTTTATTGGGCAACTAA-------GSizeHit CountTotal NormTotal
No Reads
droFic1
GGCAATCTGAACATGTCACCTGCCCAGCGGGCCACATACCACACCTCGATGTACGTGAATATTGAGTCGAGTT-------------------GAGCATGCTAT-------------ATTGATGTCTTGATGTT---------------------GTGTACTAATCCC-----------------------ATATC------------------TGATGACAAACCTTCCTGCATCA-----------G----------------------------------------------------T---CACTGACTAACT---AACATTC-TCTTTCTAAATGTA--------TTTGCTTTGTGTAC--ATGCC---A-----------------AAAGCGCGATGCAGTGC---CCCTTTGTGAATCGACGGCCTTTATTGGGCAACTAA-------GSizeHit CountTotal NormTotal
No Reads
droKik1
GGCAACCTGAACATGTCACCTGCCCAGCGGGCCACATATCACACCTCGATGTATGTGAATATTGAGTCGAGTT-------------------ACGCATGCCATT---------------GATGTCTTGATGTT---------------------GTACT---ATCCT-----------------------TTATC------------------TG---------TTT--CGGATTA-----------G----------------------------------------------------A---ATCAGACTAATT---AACCTTC-TTTTTTCAAATGTATATATATATTTGCTTT-CGTATTTATGCC---A-----------------AAAGCTCAATGCAGTGC---CCCTTTGTGAACCGGCGGCCTTTATTGGGCAACTAAAA---GTGSizeHit CountTotal NormTotal
No Reads
droAna3
GGCAACCTGAACATGTCCCCCGCCCAGCGATCCACATATCACACCTCGATGTATGTGAATATTGAGTCAAGTTGATCT------G--G--TTGAGCATGCTATT---G---------TTGATGTCTTGGTGTT---------------------GTGTATTTATCCC-----------------------CATTCCTGTCCGTTTGCATGTGACG--GG--CACTCT--GTCATCA-----------G---------------------------------------------------TC---CCCCGACTAATT---ATCATTC-TCTTTCCAAACG------------------------------C---A-----------------AAAGCTCAATGCAGAGC---CCATTCGTGGACCGTCGGCCTCTTTTGGGCAGCCAA-------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................TTGAGTCAAGTTGATCT------G--G--T............................................................................................................................................................................................................................................................................................................................................................................2011.001010000
......................................................................................................................TGATGTCTTGGTGTT---------------------GTGT.........................................................................................................................................................................................................................................................................................................1911.001100000
.....CCTGAACATGTCCCCCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................GATGTCTTGGTGTT---------------------GTGT.........................................................................................................................................................................................................................................................................................................1811.001000010
............................................................ATTGAGTCAAGTTGATCT------G--G--TTGA.........................................................................................................................................................................................................................................................................................................................................................................2411.001000010
......................................................................GTTGATCT------G--G--TTGAGCATGCT..................................................................................................................................................................................................................................................................................................................................................................2111.001000010
...........................................................TATTGAGTCAAGTTGATCT------G--G--TTGAGC.......................................................................................................................................................................................................................................................................................................................................................................2711.001000010
..........................................................................ATCT------G--G--TTGAGCATGCTATT---............................................................................................................................................................................................................................................................................................................................................................2011.001000010
...AACCTGAACATGTCCCCCGCCCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.................................................................................................TGCTATT---G---------TTGATGTCTTGGTGTT---------------------GT...........................................................................................................................................................................................................................................................................................................2611.001000010
.................................................................GTCAAGTTGATCT------G--G--TTGAGC.......................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................AATGCAGAGC---CCATTCGTGGACCGTC............................2611.001000010
droBip1
GGCAACCTGAACATGTCCCCTGCCCAACGGTCCACATACCACACCTCGATGTATGTGAATATTGAGTCAAGTTGATCT------G--C--TTGAGCATGCTATT------------ATTGATGTCTTGGTGTT---------------------GTGTATTTATCCC-----------------------CATTCC-----------------TG---AC-------------CCA-----------G----------------------------------------------------A---CACTGACTAATT---ATCATTC-TCTTTCTAAACG------------------------------C---A-----------------AAAGCTCAATGCAGAGC---CCATTCGTGGATCGACGGCCTCTTTTGGGCAGCCAA-------GSizeHit CountTotal NormTotal
No Reads
dp5
GGCAATTTGAATATGTCGCCAGCACAGCGGGCCACGTATCACACATCGATGTACGTGAATATTGAGTCGAGTTGATTGATGTTTGATGTACTGAGCATGCTATT---GATTGATTAATTGATGTCTTGACGTTGTATTG---------------GTGTCTTTATCTC-----TATTGTATATGTAT----GTCTC------------------TGATGTCGCAT--------------------------------------------------------------------------------CACTGATTAATT---GCCATTC-TCTTTCTAAATGTA--------TTTACTCTTCGTACCAAAACC---A-----------------AAAGCTCAATCCGACGC---GCAACTGTGGATCGACGGCCTCTTTTGGGCCACTAAAA---ATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................TGATTAATTGATGTCTTGACGTTGT................................................................................................................................................................................................................................................................................................................................2512.0020000000020
......................................................................................................................................................................C-----TATTGTATATGTAT----GTCTC------------------TG................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCGACGC---GCAACTGTGGATC...............................2011.0010100000000
.............................................................................................................................................................................................................................................................................................................................................TAAATGTA--------TTTACTCTTCGTA.............................................................................................2111.0010010000000
......................................................................................................................................................................................GTAT----GTCTC------------------TGATGTCGCAT--------------------------------------------------------------------------------.......................................................................................................................................................2011.0010100000000
..........................................................ATATTGAGTCGAGTTGATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..................................................................................TTGATGTACTGAGCATGCTATT---GATT........................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
..........................................................................ATTGATGTTTGATGTACTGAG........................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.......................................................................................................................................................................................................................................................................................................................................TCTTTCTAAATGTA--------TTTAC.....................................................................................................1911.0010000000010
....ATTTGAATATGTCGCCAGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
..................................................................................................................................GTTGTATTG---------------GTGTCTTTATCTC-----T..........................................................................................................................................................................................................................................................................................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................AATCCGACGC---GCAACTGTGGATCGACGGC.........................2911.0010010000000
...................................................TACGTGAATATTGAGTCGAGTTGA............................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000000
.....................................................................................................................................................................................TGTAT----GTCTC------------------TGATGTCGCA........................................................................................................................................................................................................................................2011.0010000000010
.......................................................................................GTACTGAGCATGCTATT---GATTGATT....................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.......................................................................................GTACTGAGCATGCTATT---GATTG.......................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................ATGTCGCAT--------------------------------------------------------------------------------CACTGATTAATT---........................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGC---GCAACTGTGGATCGACGG..........................2111.0010000000010
..........................................................................................................................GTCTTGACGTTGTATTG---------------GT...........................................................................................................................................................................................................................................................................................................1911.0010000100000
........................................................GAATATTGAGTCGAGTTGAGCA.........................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
droPer2
GGCAATTTGAATATGTCGCCAGCACAGCGGGCCACGTACCACACATCGATGTACGTGAATATTGAGTCGAGTTGATTGATGTTTGATGTACTGAGCATGCTATT---GATTGATTAATTGATGTCTTGACGTTGTATTG---------------GTGTCTTTATCTC-----TATTGTATATGTAT----GTCTC------------------TGATGTCGCAT--------------------------------------------------------------------------------CACTGATTAATT---GCCATTC-TCTTTCTAAATGTA--------TTTACTCTTCGTACCAAAACC---A-----------------AAAGCTCAATCCGACGC---GCAACTGTGGATCGACGGCCTCTTTTGGGCCACTAAAA---ATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................CGAGTTGATTGATGTTTGATGTACTGAG........................................................................................................................................................................................................................................................................................................................................................................2812.002000002
...............................................................................................................GATTAATTGATGTCTTGAC.....................................................................................................................................................................................................................................................................................................................................1912.002200000
..............................................................................................................................................................................................................................................................................................................................................................TTACTCTTCGTACCAAAACC---A-----------------AAAGC...........................................................2612.002020000
...AATTTGAATATGTCGCCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
...................................................................................TGATGTACTGAGCATGCTATT---GATT........................................................................................................................................................................................................................................................................................................................................................2511.001000001
...................................................................CGAGTTGATTGATGTTTGAT................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................GATGTCGCAT--------------------------------------------------------------------------------CACTGATT...............................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................GTA--------TTTACTCTTCGTACCAAAACC---..................................................................................2411.001100000
.....................................................................................................................................GTATTG---------------GTGTCTTTATCTC-----TATTGT.....................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................CTTGACGTTGTATTG---------------GTGTCTT......................................................................................................................................................................................................................................................................................................2211.001001000
.....................................................................................................................TTGATGTCTTGACGTTGTATTG---------------GTG..........................................................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................GC---GCAACTGTGGATCGACGGC.........................2111.001100000
.......................................................................................................................GATGTCTTGACGTTGTATTG---------------GT...........................................................................................................................................................................................................................................................................................................2211.001000001
............................GGGCCACGTACCACACATCG.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
..........................................................ATATTGAGTCGAGTTGATTGAT.......................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................GATTGATGTTTGATGTACTGAGCAT.....................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...................................................................CGAGTTGATTGATGTTTG..................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.....................................................................................................................................GTATTG---------------GTGTCTTTATCTC-----T..........................................................................................................................................................................................................................................................................................2011.001010000
..........................................................ATATTGAGTCGAGTTGATTGATGT.....................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
....................................................................GAGTTGATTGATGTTTGATGT..............................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTGGATCGACGGCCT.......................1911.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTGGATCGACGGCCC.......................1911.001100000
droWil2
GGCAATTTGAATATGTCGCCAACCCAACGAGCCACATATCATACATCGATGTACGTTAATATTGAGTCTAGTT-------------------GAT------------------------GTTGTGTTGATG------------------------TGTGTAAATGTT-----------------------ATA--------------------------------------GGTAT-----------TAATCGTCTAAATTTACTCTCTTTTTTTATGCCTGATTACTCTTAAAAAAAAAA---AACCGAATATTT---ATATTTT-TTTTTATTCAAAT--------------------------A--A---A--ATCTTGTATTCCTTTTAAGATCAACGCAACGGCGTGGCATTTTGGATCGAAGGCCTCTATTGGGCAATTGAAC--TATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................GAT------------------------GTTGTGTTGATG------------------------TGT.........................................................................................................................................................................................................................................................................................................1812.00201010
...................................................................CTAGTT-------------------GAT------------------------GTTGTGTTGAT.....................................................................................................................................................................................................................................................................................................................................2012.00200110
..............................................................TGAGTCTAGTT-------------------GAT------------------------GTTGTGTTGATG------------------------............................................................................................................................................................................................................................................................................................................2611.00100010
...............................................GATGTACGTTAATATTGAGTCTAGTT-------------------...........................................................................................................................................................................................................................................................................................................................................................................2611.00100100
...............................CCACATATCATACATCGATGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTGGATCGAAGGCCTCTATTGGGCA.............2911.00100010
...................................................................CTAGTT-------------------GAT------------------------GTTGTGTTGATG------------------------TGT.........................................................................................................................................................................................................................................................................................................2411.00100100
............................................................................................GAT------------------------GTTGTGTTGATG------------------------TGTGT.......................................................................................................................................................................................................................................................................................................2011.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................TCAACGCAACGGCGTGGCATTTTGGATC...............................2811.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCGAAGGCCTCTATTGGGC..............2411.00100100
...............................................................................................................................GATG------------------------TGTGTAAATGTT-----------------------ATA--------------------------------------................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGTGGCATTTTGGATC...............................1911.00101000
................................CACATATCATACATCGATGTACGTTA.............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.................................................................GTCTAGTT-------------------GAT------------------------GTTGTGTTG.......................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................AGTT-------------------GAT------------------------GTTGTGTTGATG------------------------T...........................................................................................................................................................................................................................................................................................................2011.00101000
............................................................................................GAT------------------------GTTGTGTTGATG------------------------TGTGTAAATG..................................................................................................................................................................................................................................................................................................2511.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCATTTTGGATCGAAGGCCTCT.....................2311.00110000
........................................................................T-------------------GAT------------------------GTTGTGTTGATG------------------------TGT.........................................................................................................................................................................................................................................................................................................1911.00100100
........................................................................T-------------------GAT------------------------GTTGTGTTGATG------------------------TGTGTAA.....................................................................................................................................................................................................................................................................................................2311.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTTGGATCGAAGGC.........................2111.00100010
...................................................................CTAGTT-------------------GAT------------------------GTTGTGTTGA......................................................................................................................................................................................................................................................................................................................................1911.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGATCGAAGGCCT.......................1811.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGATCGAAGGCCTCTATTGGGC..............2711.00100100
............ATGTCGCCAACCCAACGAGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
......................................................GTTAATATTGAGTCTAGT...............................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
......................................................GTTAATATTGAGTCTAGTT-------------------...........................................................................................................................................................................................................................................................................................................................................................................1911.00100100
................CGCCAACCCAACGAGCCACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTATTGGGCAATTGAAC--T...2011.00100100
......................................................................GTT-------------------GAT------------------------GTTGTGTTGATG------------------------TGTGTA......................................................................................................................................................................................................................................................................................................2411.00100100
......................................................................GTT-------------------GAT------------------------GTTGTGTTGATG------------------------TG..........................................................................................................................................................................................................................................................................................................2011.00100010
.........AATATGTCGCCAACCCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.........................................................................................................................TGTGTTGATG------------------------TGTGTAAATGT.................................................................................................................................................................................................................................................................................................2111.00100010
............ATGTCGCCAACCCAACGAGCCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
........................................................................T-------------------GAT------------------------GTTGTGTTGATG------------------------TGTGTAAAT...................................................................................................................................................................................................................................................................................................2511.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGGATCGAAGGCCTCTATTGGGCA.............2811.00100100
............................................................................................GAT------------------------GTTGTGTTGATG------------------------TGTGTAAAT...................................................................................................................................................................................................................................................................................................2411.00100100
droVir3
GGCAATCTGAACATGTCGCCGGCACAGCGGGCCACATATCATACATCCATGTACGTGAATATTGAATCTAGTTGATGG------T--G--TT---CAGACTATAGTACAT---------GTTGTATTGGT-----------GTTTATTGATATTGTGCGT----------------------GT--------------------------------------ATTAC--TATATAGATCGCTGAGC-----------------------------------------------AGCTA-GC---ATTTTACTAATTCTGTAAAATCTCTCTTTCAA-----------------------------ATGCCAACA-----------------AAAGCCTCACTAAACGC---GGCACTACGGATCGACGGCCTCTATTGGGCAACTAA-------GSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................ATTAC--TATATAGATCGCTG....................................................................................................................................................................................................................1912.002000000000000000000000000000000000200000000000000000000000000000
....ATCTGAACATGTCGCCGGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002101000000000000000000000000000000000000000000000000000000000000
......CTGAACATGTCGCCGGCACAGCGGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGACGGCCTCTATTGGGC..............2211.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGATCGACGGCCTCTATTGGGC..............2511.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................GTTTATTGATATTGTGCGT----------------------.................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................AAGCCTCACTAAACGC---GGCACTA.....................................2311.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGATCGACGGCCTCTATTGGGCAA............2711.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................TTTATTGATATTGTGCGT----------------------.................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGATCGACGGCCTCTATT..................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCTCTCTTTCAA-----------------------------ATGCCAACA-----------------AAAGC...........................................................2611.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................ATTGGT-----------GTTTATTGATATTGTGCGT----------------------GT--------------------------------------.........................................................................................................................................................................................................................................2711.001000000000000010000000000000000000000000000000000000000000000000
.....TCTGAACATGTCGCCGGCACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TACGGATCGACGGCCTCTATTGGGCAACT..........2911.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................ATATAGATCGCTGAGC-----------------------------------------------AGCTA-GC---.......................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................CGT----------------------GT--------------------------------------ATTAC--TATATAGATCGCTGAGC-----------------------------------------------A.................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
............ATGTCGCCGGCACAGCGGGCCACA...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000100000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TATATAGATCGCTGAGC-----------------------------------------------AGCTA-GC---A......................................................................................................................................................2511.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GCACTACGGATCGACGGCCT.......................2011.001000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................TACAT---------GTTGTATTGGT-----------GTTTATTGATA...............................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CACTAAACGC---GGCACTACGGATCGAC............................2611.001000000000000000000000000000000000001000000000000000000000000000
............................................................................................................AT---------GTTGTATTGGT-----------GTTTATTGAT................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
...AATCTGAACATGTCGCCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
...................................ATATCATACATCCATGTACGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000001000000000000000000000000000000
droMoj3
GGCAATCTGAATATGTCGCCGGCACAGCGTGCCACCTACCATACTTCCATGTACGTGAATATTGAGTCTAGTTGATCG------T--A--TT---CAATCTATA---------------CATGTTGTATTGGT---------------------GTATATTGATTATATATGTATTGTGTGTGT---------------------GCAT--------------------TATATAGATTG----------------------------------------------GACTTGAAACAA-TC---ATTTCACTAATC-TGTACAATCTTTTTTTCAAAT----------------------------CGTCAACA-----------------AAAGCTTAACACAGCGT---GGCACTACGGATCGACGGCCTCTATTGGCCAATTAA-------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................ATTGAGTCTAGTTGATCG------T--A--TT---........................................................................................................................................................................................................................................................................................................................................................................2216.006400101
......................................................................................................................................................................................GT---------------------GCAT--------------------TATATAGATTG----------------------------------------------GACTT....................................................................................................................................................................2212.002100001
...AATCTGAATATGTCGCCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
............................................................ATTGAGTCTAGTTGATCG------T--A--TT---C.......................................................................................................................................................................................................................................................................................................................................................................2312.002100100
..................................................................................................................................................................................................................................................................................................................................................................................AACA-----------------AAAGCTTAACACAGCGT---GGCA........................................2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CTACGGATCGACGGCCTCT.....................1911.001001000
......CTGAATATGTCGCCGGCACAGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
............................................................ATTGAGTCTAGTTGATCG------T--................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......CTGAATATGTCGCCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
..................................................................................................................................................................................GTGTGT---------------------GCAT--------------------TATATAGATT........................................................................................................................................................................................................................2011.001100000
....ATCTGAATATGTCGCCGGCACAGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
........................................................................................................................................................................................................................................................................................................AA-TC---ATTTCACTAATC-TGTAC.....................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGCTTAACACAGCGT---GGCACTACGGAT................................2711.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................AAGCTTAACACAGCGT---GGCA........................................2011.001100000
.....................................................CGTGAATATTGAGTCTAGT...............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................GTACAATCTTTTTTTCAAAT----------------------------CGTCA....................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................CGTCAACA-----------------AAAGCTTAACACAGC.................................................2311.001000100
...AATCTGAATATGTCGCCGGCACAGCGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.............TGTCGCCGGCACAGCGTGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGCACTACGGATCGACGGC.........................1911.001000001
.................................................................GTCTAGTTGATCG------T--A--TT---CA......................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................AACACAGCGT---GGCACTACGGATC...............................2311.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACTACGGATCGACGGCCTCTATTGG................2511.001100000
......................................................................................................................................................................................GT---------------------GCAT--------------------TATATAGATTG----------------------------------------------GACTTGAAACA..............................................................................................................................................................2811.001000001
.............................................................................................................................................................................................................GCAT--------------------TATATAGATTG----------------------------------------------GACTT....................................................................................................................................................................2011.001000001
..............................................................................................................................TATTGGT---------------------GTATATTGATTAT................................................................................................................................................................................................................................................................................................2011.001100000
..............................................................................................................................................................ATTGATTATATATGTATTGTGTGTGT---------------------G.........................................................................................................................................................................................................................................................2711.001100000
................................CACCTACCATACTTCCATGTACGTGAAT...........................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ACTACGGATCGACGGCCTCTATTGGC...............2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................ACA-----------------AAAGCTTAACACAGCGT---GG..........................................2211.001100000
droGri2
GGCAATCTGAATATGTCGCCGGCTCAGCGTGCCACATATCATACATCAATGTACGTGAATATTGAGTCTAGTTC----------------GTGAGCAAGCTATT---GAT---------GTTGTGT-----GTGTATTGGTGTA--TTGATATTGTGTGTGTATCTA------------------AAACTATATT------------------------------TT--C---------GCCGGTTGG---------------------------------------------TTCGA-GC---ATTTAACTAATC-TCTACATTCTTCTTTCCGAA----------------------------ATGCTAACGAAA--------------GAAGCTCAACGCATCGG---CGCACTTTGGATCGACGGCCTCTATTGGGCAAATAAAGAATATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........ATATGTCGCCGGCTCAGCGTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101

Generated: 05/18/2015 at 07:26 PM