ID:

dsi_2010

 Coordinate:

3l:5636-5785 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.2 -4.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TATTTCTTTTCTGTATCTTTATTATTGTAATTCTGTTTAAGGGGTAGAAGTATACTATTTTGATCGAATTCAAATTTTGCAAATATATTTTACACACATTTTACCAAATTTTACATTTAAAATACATGGTTTTTCTATATGCTTATAAGTGATTTTAAAAACATTGCTTAGATATTGTCGATACACTTAATTGCTTCCAGTTACACTAACGGTACAGTGGGCACAATAAGAAAAGTTAACCAAAACTCGA
******************************************************************************************************************************.(((...((.(((......((((((((.........)))))))).....))).))...)))....*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
.............................................AGAAGTATACTATTTTGATCGAATT.................................................................................................................................................................................... 25 0 1 15.00 15 2 13 0 0 0 0
.............................................AGAAGTATACTATTTTGATCGAATTCAAA................................................................................................................................................................................ 29 0 1 3.00 3 0 3 0 0 0 0
....................................................................................................................................................................TGCTTAGATATTGTCGATACACTTAAT........................................................... 27 0 1 3.00 3 2 1 0 0 0 0
...............................................AAGTATACTATTTTGATCGAATTCA.................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
..............................................GAAGTATACTATTTTGATCGAATTCAAA................................................................................................................................................................................ 28 0 1 2.00 2 1 1 0 0 0 0
..............................................GAAGTATACTATTTTGATCGAATT.................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................................................TGCTTAGATATTGTCGATACACTTAATT.......................................................... 28 0 1 2.00 2 1 0 1 0 0 0
...............................................AAGTATACTATTTTGATCGAATTCAAA................................................................................................................................................................................ 27 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................................TGGTTTTTCTATATGCTTATAAGTGA.................................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0
....................................................................................................................................................................TGCTTAGATATTGTCGATACACTT.............................................................. 24 0 1 2.00 2 1 1 0 0 0 0
.............................................AGAAGTATACTATTTTGATCGAATTC................................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0
..............................................GAAGTATACTATTTTGATCGAATTC................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
..................................................TATACTATTTTGATCGAATTCAAA................................................................................................................................................................................ 24 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................................TTAGATATTGTCGATACACTTAATTGCT....................................................... 28 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................TGCTTAGATATTGTCGATACACT............................................................... 23 0 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................................................CTTCCAGTTACACTAACGGTA.................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........................................GGTAGAAGTATACTATTTTGATCGTT...................................................................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................TTGTCGATACACTTAATTGCTTCCAGT................................................. 27 0 1 1.00 1 1 0 0 0 0 0
..........CTGTATCTTTATTATTGTAATTCTGT...................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............................................AAGTATACTATTTTGATCGAATTCAAAT............................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
............................................................................................CACACATTTTACCAAA.............................................................................................................................................. 16 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................TGCTTAGATATTGTCGATACACTTAA............................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.........................TGTAATTCTGTTTAAGGGGTAGAAGTA...................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................TGATTTTAAAAACATTGCTTAGAT............................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
...............................TCTGTTTAAGGGGTAGAAGTATACTATT............................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
..TTTCTTTTCTGTATCTTTATTATTGTAA............................................................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TTGCTTAGATATTGTCGATACACTT.............................................................. 25 0 1 1.00 1 0 0 1 0 0 0
..............................................................................................................................................................................................................TAACGGTACAGTGGGCACAATAAGA................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................AGAAGTATACTATTTTGATCGAATTT................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0
...............................................AAGTATACTATTTTGATCGAATT.................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
...................TATTATTGTAATTCTGTTTAAGTTA.............................................................................................................................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................TAAGTGATTTTAAAAACATTGCTTAGA.............................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
....................ATTATTGTAATTCTGTTTAAGGGG.............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TTGCTTAGATATTGTCGATACACT............................................................... 24 0 1 1.00 1 0 1 0 0 0 0
.......................ATTGTAATTCTGTTTAAGGGGTAGA.......................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................................................................................TGATTTTAAAAACATTGCTTAGATA............................................................................ 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................TTTTGATCGAATTCAAATTTTGCA......................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................ATTGCTTAGATATTGTCGATACACTTAA............................................................ 28 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TAACGGTACAGTGGGCACAATAAGAA.................. 26 0 1 1.00 1 0 1 0 0 0 0
....................ATTATTGTAATTCTGTTTAAGGGGTA............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................TCCAGTTACACTAACGGTACAGTGG.............................. 25 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................GCTTAGATATTGTCGATACACTTAAT........................................................... 26 0 1 1.00 1 1 0 0 0 0 0
...............TCTTTATTATTGTAATTCTGTTTA................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................TATACTATTTTGATCGAATTCAAAT............................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.........TCTGTATCTTTATTATTGTAATTCTGTT..................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0
...............................................AAGTATACTATTTTGATCGAATTCAA................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0
....................................................................................................................................................................TGCTTAGATATTGTCGATACA................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................TAATTGCTTCCAGTTACACTAACGG...................................... 25 0 1 1.00 1 0 1 0 0 0 0
.............................................AGAAGTATACTATTTTGATCGAATTCAA................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0
..........CTGTATCTTTATTATTGTAATTCTG....................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................TTAGATATTGTCGATACACTTAATTGC........................................................ 27 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................GGTTTTTCTATATGCTTATAAGTGA.................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................TTGCTTAGATATTGTCGATACACTTA............................................................. 26 0 1 1.00 1 1 0 0 0 0 0
........................TTGTAATTCTGTTTAAGGGGTAGAAGTA...................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................TAGATATTGTCGATACACTTAATTGC........................................................ 26 0 1 1.00 1 1 0 0 0 0 0
......................TATTGTAATTCTGTTTAAGGGGTAGAAGTA...................................................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0
..................................GTTTAAGGGGTAGAAGTATACTATT............................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................TTGCTTAGATATTGTCGATACACTTAAT........................................................... 28 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................ATTGTCGATACACTTAATTGCTTCT.................................................... 25 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................TATATGCTTATAAGTGATTTTAAA........................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................................................TTCCAGTTACACTAACGGTACAGTGGG............................. 27 0 1 1.00 1 0 1 0 0 0 0
................................................................................................TATTTTACCAAATTTTACATTAG................................................................................................................................... 23 3 3 0.33 1 0 0 1 0 0 0
........TTCTGTACCTTTGTCATTGTA............................................................................................................................................................................................................................. 21 3 9 0.11 1 0 0 0 1 0 0
..........................................................ATTGATCGAAGGCAAATTTT............................................................................................................................................................................ 20 3 20 0.10 2 0 0 0 0 2 0
.................................................................................................................................................................................................................CGGTACAGTGCGGACA......................... 16 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

ATAAAGAAAAGACATAGAAATAATAACATTAAGACAAATTCCCCATCTTCATATGATAAAACTAGCTTAAGTTTAAAACGTTTATATAAAATGTGTGTAAAATGGTTTAAAATGTAAATTTTATGTACCAAAAAGATATACGAATATTCACTAAAATTTTTGTAACGAATCTATAACAGCTATGTGAATTAACGAAGGTCAATGTGATTGCCATGTCACCCGTGTTATTCTTTTCAATTGGTTTTGAGCT
***********************************************************.(((...((.(((......((((((((.........)))))))).....))).))...)))....****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M025
embryo
 GSM343915
embryo
...............AGAAATAATAACATTAAGACAAATT.................................................................................................................................................................................................................. 25 0 1 70.00 70 54 11 5 0 0 0 0 0
...............AGAAATAATAACATTAAGACAAAT................................................................................................................................................................................................................... 24 0 1 28.00 28 24 3 1 0 0 0 0 0
............................................................................................................................................................................ATAACAGCTATGTGAATTAACGAAGGT................................................... 27 0 1 26.00 26 21 3 2 0 0 0 0 0
.........AGACATAGAAATAATAACATTAAGACAA..................................................................................................................................................................................................................... 28 0 1 25.00 25 23 2 0 0 0 0 0 0
.....................................................................................................................................................................................ATGTGAATTAACGAAGGTCAATGT............................................. 24 0 1 19.00 19 19 0 0 0 0 0 0 0
.........................................................AAAACTAGCTTAAGTTTAAAACGTTT....................................................................................................................................................................... 26 0 1 17.00 17 14 3 0 0 0 0 0 0
.....................................................................................................................................................................................ATGTGAATTAACGAAGGTCAATGTGAT.......................................... 27 0 1 13.00 13 10 2 1 0 0 0 0 0
.........................................................AAAACTAGCTTAAGTTTAAAACGTTTAT..................................................................................................................................................................... 28 0 1 13.00 13 8 3 2 0 0 0 0 0
.............................................................................................................................................................................................TAACGAAGGTCAATGTGATTGCCATGT.................................. 27 0 1 7.00 7 7 0 0 0 0 0 0 0
.....................................................................................................................................AGATATACGAATATTCACTAAAATTT........................................................................................... 26 0 1 6.00 6 3 3 0 0 0 0 0 0
...............AGAAATAATAACATTAAGACAAATTCCC............................................................................................................................................................................................................... 28 0 1 6.00 6 5 1 0 0 0 0 0 0
..AAAGAAAAGACATAGAAATAATAACAT............................................................................................................................................................................................................................. 27 0 1 6.00 6 4 1 1 0 0 0 0 0
.....................................................................................................................................AGATATACGAATATTCACTAAAAT............................................................................................. 24 0 1 5.00 5 4 1 0 0 0 0 0 0
...............................AGACAAATTCCCCATCTTCATATGAT................................................................................................................................................................................................. 26 0 1 5.00 5 4 1 0 0 0 0 0 0
...................................................................................................................................................................................................AGGTCAATGTGATTGCCATGTCACCCGT........................... 28 0 1 5.00 5 3 2 0 0 0 0 0 0
...................................................................................................................................................................................................AGGTCAATGTGATTGCCATGTCAC............................... 24 0 1 5.00 5 4 1 0 0 0 0 0 0
...............................................................................................................................................................TTGTAACGAATCTATAACAGCTAT................................................................... 24 0 1 4.00 4 3 0 1 0 0 0 0 0
.......................................................................................................................................................................................GTGAATTAACGAAGGTCAATGTGAT.......................................... 25 0 1 4.00 4 2 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................CCGTGTTATTCTTTTCAATTGGTTT...... 25 0 1 4.00 4 3 1 0 0 0 0 0 0
....................................................................................................................................................................ACGAATCTATAACAGCTATGTGAATT............................................................ 26 0 1 4.00 4 1 3 0 0 0 0 0 0
...................................................................................................................................................................AACGAATCTATAACAGCTATGTGAAT............................................................. 26 0 1 4.00 4 2 1 1 0 0 0 0 0
...............AGAAATAATAACATTAAGACAAA.................................................................................................................................................................................................................... 23 0 1 4.00 4 4 0 0 0 0 0 0 0
....AGAAAAGACATAGAAATAATAACATT............................................................................................................................................................................................................................ 26 0 1 4.00 4 2 2 0 0 0 0 0 0
............................................................................................................................................................................................TTAACGAAGGTCAATGTGATTGCCATGT.................................. 28 0 1 4.00 4 4 0 0 0 0 0 0 0
....................................................................................................................................................................ACGAATCTATAACAGCTATGTGAAT............................................................. 25 0 1 3.00 3 0 3 0 0 0 0 0 0
........................................................................TTAAAACGTTTATATAAAATGTGTGT........................................................................................................................................................ 26 0 1 3.00 3 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCATGTCACCCGTGTTATTCTT.................. 25 0 1 3.00 3 1 1 0 0 1 0 0 0
.....................................................................................................ATGGTTTAAAATGTAAATTTTATGT............................................................................................................................ 25 0 1 3.00 3 1 2 0 0 0 0 0 0
..........................................................................................................................ATGTACCAAAAAGATATACGAATAT....................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0
.........................................................AAAACTAGCTTAAGTTTAAAACGT......................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0
...................................................................................................................................................TCACTAAAATTTTTGTAACGAATCTAT............................................................................ 27 0 1 3.00 3 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTGCCATGTCACCCGTGTTATTCTTTT................ 27 0 1 3.00 3 1 1 1 0 0 0 0 0
............................................................................................GTGTGTAAAATGGTTTAAAATGTAAAT................................................................................................................................... 27 0 1 3.00 3 1 2 0 0 0 0 0 0
.........................................................AAAACTAGCTTAAGTTTAAAACGTTTA...................................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0
....................................................ATGATAAAACTAGCTTAAGTTTAAAACGT......................................................................................................................................................................... 29 0 1 3.00 3 3 0 0 0 0 0 0 0
........AAGACATAGAAATAATAACATTAAGACAA..................................................................................................................................................................................................................... 29 0 1 3.00 3 3 0 0 0 0 0 0 0
..AAAGAAAAGACATAGAAATAATAACATT............................................................................................................................................................................................................................ 28 0 1 3.00 3 2 1 0 0 0 0 0 0
...................ATAATAACATTAAGACAAATTCCCCAT............................................................................................................................................................................................................ 27 0 1 3.00 3 2 1 0 0 0 0 0 0
....AGAAAAGACATAGAAATAATAACAT............................................................................................................................................................................................................................. 25 0 1 2.00 2 1 1 0 0 0 0 0 0
...................................................................................ATATAAAATGTGTGTAAAATGGT................................................................................................................................................ 23 0 1 2.00 2 0 2 0 0 0 0 0 0
............................................................................................................................................................................................TTAACGAAGGTCAATGTGATTGC....................................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0
.......................................................................................................GGTTTAAAATGTAAATTTTATGTAC.......................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................CTATAACAGCTATGTGAATTAACGA....................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
............................................ATCTTCATATGATAAAACTAGCTTAAGT.................................................................................................................................................................................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0
................................................................................................................................................................................CAGCTATGTGAATTAACGAAGGTCAAT............................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
.........AGACATAGAAATAATAACATTAAGACA...................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................................................................................................CGAATCTATAACAGCTATGTGAATT............................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................AAGACAAATTCCCCATCTTCATATGAT................................................................................................................................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GATTGCCATGTCACCCGTGTTATT..................... 24 0 1 2.00 2 1 1 0 0 0 0 0 0
.......................................................................................AAAATGTGTGTAAAATGGTTTAAAATGT....................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................AAAACTAGCTTAAGTTTAAAACGTT........................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................................................................AGATATACGAATATTCACTAAAATTTT.......................................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0
.............................TAAGACAAATTCCCCATCTTCATATG................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................AACAGCTATGTGAATTAACGAAGGT................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................TTATATAAAATGTGTGTAAAATGGTTT.............................................................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0
................................................................................................................................................................................................................TGCCATGTCACCCGTGTTATTCTT.................. 24 0 1 2.00 2 1 1 0 0 0 0 0 0
..........................................................AAACTAGCTTAAGTTTAAAACGTTTAT..................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................TAACGAAGGTCAATGTGATTGCCAT.................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................GATTGCCATGTCACCCGTGTTATTCT................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0
.....................................................................................ATAAAATGTGTGTAAAATGGTTTA............................................................................................................................................. 24 0 1 2.00 2 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................AAGGTCAATGTGATTGCCATGT.................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0
............................................................................................................................................................................ATAACAGCTATGTGAATTAACGAAGGTCA................................................. 29 0 1 2.00 2 1 1 0 0 0 0 0 0
...................................................................................................................................................TCACTAAAATTTTTGTAACGAATCT.............................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGGTCAATGTGATTGCCATGTCACCC............................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0
........................................CCCCATCTTCATATGATAAAACTAGCTT...................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
ATAAAGAAAAGACATAGAAATAAT.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................TATACTAGCTTAAGTTTAAAACGTTTA...................................................................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................TATGTGAATTAACGAAGGTCAATGT............................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
....................TAATAACATTAAGACAAATTCCCCAT............................................................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................AACTAAAATTTTTGTAACGAATCTAT............................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGTGTTATTCTTTTCAATTGGT........ 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................ATGTACCAAAAAGATATACGAATATT...................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................CCCATCTTCATATGATAAAACTAGCTTA..................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................AGACAAATTCCCCATCTTCATATGA.................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...............AGAAATAATAACATTAAGACAAATTCCCC.............................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................AAGATATACGAATATTCACTAAAATTTT.......................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................AGATATACGAATATTCACTAAAATT............................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................AACAGCTATGTGAATTAACGAAGGTCA................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................CCCCATCTTCATATGATAAAACTAGCTTA..................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................AACGAATCTATAACAGCTATGTGAATT............................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................ATGTGTGTAAAATGGTTTAAAATGTAAA.................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................ATCTTCATATGATAAAACTAGCTT...................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TAACGAAGGTCAATGTGATTG........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................AAACTAGCTTAAGTTTAAAACGTTTATAT................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................TGTAACGAATCTATAACAGCTATGT................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...AAGAAAAGACATAGAAATAATAACATT............................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................CCCCATCTTCATATGATAAAACTATCTT...................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................GTAAAATGGTTTAAAATGTAAATT.................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................TCCCCATCTTCATATGATAAAACTAGCTT...................................................................................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................TTGCCATGTCACCCGTGTTATTCT................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................AGCTATGTGAATTAACGAAGGTCAATGT............................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTGATTGCCATGTCACCCGTGTTATTCTT.................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................AACGAAGGTCAATGTGATTGC....................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................ATGTAAATTTTATGTACCAAAAAGATAT............................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
...AAGAAAAGACATAGAAATAATAACAT............................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................ATAACAGCTATGTGAATTAACGAAGGTC.................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................AAGATATACGAATATTCACTAAAATTT........................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGGTCAATGTGATTGCCATGTCACCCG............................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................GTAACGAATCTATAACAGCTAT................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................ATCTATAACAGCTATGTGAAT............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTAACGAAGGTCAATGTGATTGCCAT.................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................AAATATTCACTAAAATTTTTGT....................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................TTAAAATGTAAATTTTATGTACCA........................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................AAATGTGTGTAAAATGGTTTAAAATGT....................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................AAGACAAATTCCCCACCTTCATATGAT................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0
........................................................TAAAACTAGCTTAAGTTTAAAACGTTTAT..................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................GGTTTAAAATGTAAATTTTATGT............................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................CTAGCTTAAGTTTAAAACGTTTATAT................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........AGATATAGAAATAATAACATTAAGACAA..................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GCCATGTCACCCGTGTTATTCTT.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................ACGAAGGTCAATGTGATTGCCATGT.................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.....GAAAAGACATAGAAATAATAACATT............................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...............AGAAATAATAACATTAAGACAA..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0
.........AGACATAGAAATAATAACATTAAGACG...................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................ATGTGAATTAACGAAGGTCAATGTGATT......................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................TCTATAACAGCTATGTGAATTAA.......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................TTATATAAAATGTGTGTAAAATGGTTTA............................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................TTTGTAACGAATCTATAACAGCTAT................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................AGCTATGTGAATTAACGAAGGT................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ATTCTTTTCAATTGGTTTTGAGCT 24 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................CGAAGGTCAATGTGATTGCCATGTCAC............................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................AAAACTAGCTTAAGTTTAAAACGTTTAC..................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
.....................................ATTCCCCATCTTCATATGATAAAACT........................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................ATAAAATGTGTGTAAAATGGTTTAAAATGT....................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................ATCTATAACAGCTATGTGAATTAACG........................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................GAATTAACGAAGGTCAATGTGATTGCC...................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................AAAGATATACGAATAT....................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................CGAATCTATAACAGCTATGTGAAT............................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0
........................................................................................................................................................................ATCTATAACAGCTATGTGAATTAA.......................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................GAATTAACGAAGGTCAATGTGAT.......................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................AATGTGTGTAAAATGGTTTAAAATGTAA..................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................GTGTAAAATGGTTTAAAATGTAAATT.................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTATTGAAGGTCAATGTGATTGCCATGT.................................. 28 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................CTATAACAGCTATGTGAATTAAC......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................CTTCATATGATAAAACTAGCTTAAGT.................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................TTCATATGATAAAACTAGCTTAAGT.................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................ATAAAACTAGCTTAAGTTTAAAACGTTT....................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................GTGTAAAATGGTTTAAAATGTAAAT................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.........AGACATAGAAATAATAACATTAAGACAAAT................................................................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TAACAAAGGTCAATGTGATTGCCATGT.................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGATTGCCATGTCACCCGT........................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................CTAGCTTAAGTTTAAAACGT......................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTTGTAACGAATCTATAACAGCTATGT................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................AGATATATGAATATTCACTAAAATTT........................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................AAGACAAATTCCCCATCTTCATATG................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CATGTCACCCGTGTTATTCTTTTCAATT........... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................ATGTGTGTAAAATGGTTTAAAATGTAA..................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................TTATGTACCAAAAAGATATACGAATAT....................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................TTATATAAAATGTGTGTAAAATGGT................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.........AGACATAGAAATAATAACATTAAGACAAA.................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................ATTCACTAAAATTTTTGTAACGAATCTA............................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................AAAGATATACGAATATTCACTAAAATTT........................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................GTGTGTAAAATGGTTTAAAATGTAA..................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...............AGAAATAATAACATTAAGACAAATTCC................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATTGCCATGTCACCCGTGTTATT..................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................AACAGCTATGTGAATTAACGAAGGTCAAT............................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................ATAACAGCTATGTGAATT............................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................CTATAACAGCTATGTGAATTAACGAAGGT................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................ACTAGCTTAAGTTTAAAACGTTTATAT................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................TTTATGTACCAAAAAGATATA.............................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................CTAGCTTAAGTTTAAAACGTTT....................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TAACAGCTATGTGAATTAACGAAGGT................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................ATTCACTAAAATTTTTGTAACGAAT................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAATGTGATTGCCATGTCACCCGT........................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................TTATATAAAATGTGTGTAAAATGGTT............................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
........AAGATATAGAAATAATAACATTAAGACAAAT................................................................................................................................................................................................................... 31 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGTGATTGCCATGTC................................. 15 1 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAATGTGATTGGCATGA.................................. 18 2 2 0.50 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................CAGCGATGTGGGTTAACGA....................................................... 19 3 16 0.31 5 0 0 0 3 0 0 1 1
................................................................................................................................................................................CATCGATGTGAGTTAACGA....................................................... 19 3 17 0.29 5 0 0 0 5 0 0 0 0
......................................................................................................................................................................................................GCAATGTGATGGCCAT.................................... 16 2 13 0.08 1 1 0 0 0 0 0 0 0
..................................................................................................AAAAAGGTTTAATACGTAAAT................................................................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:5586-5835 - dsi_2010 TATTTCTTTTCTGTATCTTTATTATTGTAATTCTGTTTAAGGGGTAGAAGTATACTATTTTGATCGAATTCA--AATTTTGCAAA----------T---------ATATTTTACACACATTTTACCAAATTT--TAC--ATTTA--AAATACATGGTTTTTCTATATGCTTAT--AAGTGA------TTTTAAAAACATTGCTTA-GATATTGTCGATACACTTAA--TTGCTTCCAGTTACACTAA--CGGTACAGTGGGCACAATA-------------------------AGAAAAGTTAACCAAAACTCGA
droSec2 scaffold_2:61626-61859 - C----------------TTTATTATTGTAATTCTGTTTAAGGGGTAGAAGTATACTATTTTGATCGAATTCA--AATTTTGCAAA----------T---------ATATTTTACACACATCTTACCAAATTT--TAC--ATTTA--AAATACATGGTTTTTGTATATGCTGAT--AAGTGA------TTTTAAAAACATTGCTTA-GATATTGTCGATACACTTAA--TTGCTTCCAGTTACACTAA--CGGTACAGTGGGCACAATA-------------------------AGAAAAGTTAACCAAAACTCGA
dm3 chr3L:26064-26313 - TATTTATTTTTTGTATCTTTATTATCGTAATTTCGTTTAAAGGGTAGAAGTGTACTTTTTTGTTCGAGTTCA--AATTTTACAAA----------T---------ATATTTTACACACATCCTACAAAATTT--TAC--ATTTA--AAATACATGGTTTTTGTCTATGCTGAT--AAGTGA------TTTTAAAAACATTGCACA-GATATTGTCGATACACTCAA--CTGCTTCCAGTTACACTAACGCT--ACAGTGGGCACAACA-------------------------AGAAAAGTTAACCAAAACTCGA
droEug1 scf7180000409184:351916-352110 + G-----------------------------------------------------------------AATTTAATAATTTTACACA----------TAGTTTTTACACATTTTACACGTATTTTACACATCTC--TGC--CTTCC--AAATCTCCGGTTCGTGTCTAGAATAAG--AAGAGG------TTTTCGAACCATTGCTCA-GAGGTTGCTGGC-------A--TTGCTTTCAGTTGCACTAAATCTGGACAGTGGCCACAAAACTGTTT---------------------CAATTTCAACCGAAACTCGA
droBia1 scf7180000300910:389333-389498 + C----------------------------------------------------------------------A--TATTTTCCAA-----------GACTTTTTACACATATTACACATATTTTACACAGTT-------------------CACCGGTTTGCGTCTACGCTGAC--AGCCGG------GTCTCGAACCCTTGC---------------------TAA--TTGCTTTCAGTTGCTCTAAAACTGTACAGTGCTTGC----------------TCAAATCGAATTTCGAAGTCTCAGCCGAAACTCGA
droTak1 scf7180000415846:409918-410130 - A-------------------------------------------------------------------CCCA--TATTTTACAA-----------GACTTTTTACACATTTTACACATATTTTACATAGCTC--TGC--GTTCG--AAATCTCCGGCTTGTGTCTACGCTGACTTTGCTGG------TTTAGGAACCATTGCTCAAGAGGTTGGCGGCACGACTAA--TTGCTTTCAGTTTCACTAAAACTGTAAATTAACTACAAAACTGTTTTAAAATTCGATTT--------AAATTTCAACCGAAACTCGA
droEle1 scf7180000491249:411629-411810 + A----------------------------------------------------------------------------------------------CATATTTTACACATCTTAAACATATTTTAAAATATTC---------------TCTATATGGTTTTTGTCTAGACTGAC--AGCTGG------TTTAAGAAAGATTGTTCA-G-GGTTGTTGGCCCGACTAA--TCGCTTCCAGTTGCTCTAAAGCTGCACAGTGACCAGAAAACTGTACTA----CCAAATT--------GTATTTCAACCAAAACTCGA
droRho1 scf7180000768167:30619-30832 - A---------------------------------------------------------------------------TTTTACACATTTTTTACAAGACATTCTTTACGACTTAAACTTATTTAAAAATATTCTCTGT--ACTCA--GCATTTCCGGTTTTTGTCTAGACTGAC--AGATGGTTTTGGTTTTGGAGCGATTGCTTA-G-GGTTGTCGGCACGACTAA------TTCCAGTTGCCAAGAAA---CACAGTGACCACAAAACTGTTTAC-TTTTGAAATT--------GAATTTCAACCGAAACTCGA
droFic1 scf7180000454105:437920-438112 + A----------------------------------------------------------------------------------------------AACCTTCTAGACATACAACAAATATTTTACAGTGTTT--CTCGTA-CTA--AGACCACTGGTTTTTGTCAACACTGAC--AGTTGG------TTTTGGAACCATTGCTCA-GGTTTTGTCGAAACGACTGA--TTGCTTCCAGTGGCACTAAAACTGCACAGTGACCACGGCACTGTTTGC----CTTAATC--------AAATTTTAACCAAAACTTGA
droKik1 scf7180000301710:115805-115958 - C---------------------------------------------------------------------------------A------------GACATTTTATACG-------TAAATTTAAGTTTAGTT--TCC--ACGTCAAACACATCAGGTTTGTGCCTTGGCTGAG---------------TTG---AAAATTGCTCATTGGGTTGTCGTCGTGACTAATATTGCTTCCACTTGTTGTAAAACT--------------TTG-------------------------GTAAATTTTAACCAAAACTCGA
droAna3 scaffold_13337:274999-275014 + G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACCGAAACTCGA
droBip1 scf7180000395155:489538-489552 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACCAAAACTCGA
dp5 XR_group8:1217804-1217812 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTGGA
droPer2 scaffold_510:760-768 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TATTTCTTTTCTGTATCTTTATTATTGTAATTCTGTTTAAGGGGTAGAAGTATACTATTTTGATCGAATTCA--AATTTTGCAAA----------T---------ATATTTTACACACATTTTACCAAATTT--TAC--ATTTA--AAATACATGGTTTTTCTATATGCTTAT--AAGTGA------TTTTAAAAACATTGCTTA-GATATTGTCGATACACTTAA--TTGCTTCCAGTTACACTAA--CGGTACAGTGGGCACAATA-------------------------AGAAAAGTTAACCAAAACTCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................AGAAGTATACTATTTTGATCGAATT.....................................................................................................................................................................................................................................................25115.0015000000013020000000
.............................................AGAAGTATACTATTTTGATCGAATTCA--AA...............................................................................................................................................................................................................................................2913.00300000003000000000
.......................................................................................................................................................................................................TGCTTA-GATATTGTCGATACACTTAA--T......................................................................................2713.00300000001020000000
...............................................AAGTATACTATTTTGATCGAATTCA--.................................................................................................................................................................................................................................................2512.00200000000020000000
..............................................GAAGTATACTATTTTGATCGAATTCA--AA...............................................................................................................................................................................................................................................2812.00200000001010000000
..............................................GAAGTATACTATTTTGATCGAATT.....................................................................................................................................................................................................................................................2412.00200000000020000000
.......................................................................................................................................................................................................TGCTTA-GATATTGTCGATACACTTAA--TT.....................................................................................2812.00200000000110000000
...............................................AAGTATACTATTTTGATCGAATTCA--AA...............................................................................................................................................................................................................................................2712.00200000000020000000
.........................................................................................................................................................TGGTTTTTCTATATGCTTAT--AAGTGA------................................................................................................................................2612.00200000001010000000
.......................................................................................................................................................................................................TGCTTA-GATATTGTCGATACACTT...........................................................................................2412.00200000001010000000
.............................................AGAAGTATACTATTTTGATCGAATTC....................................................................................................................................................................................................................................................2612.00200000001010000000
..............................................GAAGTATACTATTTTGATCGAATTC....................................................................................................................................................................................................................................................2512.00200000000020000000
..................................................TATACTATTTTGATCGAATTCA--AA...............................................................................................................................................................................................................................................2412.00200000000020000000
..........................................................................................................................................................................................................TTA-GATATTGTCGATACACTTAA--TTGCT..................................................................................2811.00100000000010000000
.......................................................................................................................................................................................................TGCTTA-GATATTGTCGATACACT............................................................................................2311.00100000001000000000
.......................................................................................................................................................................................................................................CTTCCAGTTACACTAA--CGGTA.............................................................2111.00100000000010000000
..........................................GGTAGAAGTATACTATTTTGATCGTT.......................................................................................................................................................................................................................................................2611.00100000000010000000
..................................................................................................................................................................................................................TTGTCGATACACTTAA--TTGCTTCCAGT............................................................................2711.00100000000010000000
..........CTGTATCTTTATTATTGTAATTCTGT.......................................................................................................................................................................................................................................................................................2611.00100000000010000000
...............................................AAGTATACTATTTTGATCGAATTCA--AAT..............................................................................................................................................................................................................................................2811.00100000000010000000
.................................................................................................................CACACATTTTACCAAA..........................................................................................................................................................................................1611.00100000001000000000
.......................................................................................................................................................................................................TGCTTA-GATATTGTCGATACACTTAA--.......................................................................................2611.00100000000010000000
.........................TGTAATTCTGTTTAAGGGGTAGAAGTA.......................................................................................................................................................................................................................................................................2711.00100000001000000000
..................................................................................................................................................................................TGA------TTTTAAAAACATTGCTTA-GAT..........................................................................................................2411.00100000000010000000
...............................TCTGTTTAAGGGGTAGAAGTATACTATT................................................................................................................................................................................................................................................................2811.00100000000010000000
..TTTCTTTTCTGTATCTTTATTATTGTAA.............................................................................................................................................................................................................................................................................................2811.00100000000010000000
......................................................................................................................................................................................................TTGCTTA-GATATTGTCGATACACTT...........................................................................................2511.00100000000100000000
....................................................................................................................................................................................................................................................TAA--CGGTACAGTGGGCACAATA-------------------------AGA...................2511.00100000000010000000
.............................................AGAAGTATACTATTTTGATCGAATTT....................................................................................................................................................................................................................................................2611.00100000001000000000
...............................................AAGTATACTATTTTGATCGAATT.....................................................................................................................................................................................................................................................2311.00100000001000000000
...................TATTATTGTAATTCTGTTTAAGTTA...............................................................................................................................................................................................................................................................................2511.00100000001000000000
............................................................................................................................................................................T--AAGTGA------TTTTAAAAACATTGCTTA-GA...........................................................................................................2711.00100000000010000000
....................ATTATTGTAATTCTGTTTAAGGGG...............................................................................................................................................................................................................................................................................2411.00100000000010000000
......................................................................................................................................................................................................TTGCTTA-GATATTGTCGATACACT............................................................................................2411.00100000001000000000
.......................ATTGTAATTCTGTTTAAGGGGTAGA...........................................................................................................................................................................................................................................................................2511.00100000000100000000
..................................................................................................................................................................................TGA------TTTTAAAAACATTGCTTA-GATA.........................................................................................................2511.00100000000010000000
.........................................................TTTTGATCGAATTCA--AATTTTGCA........................................................................................................................................................................................................................................2411.00100000000010000000
.....................................................................................................................................................................................................ATTGCTTA-GATATTGTCGATACACTTAA--.......................................................................................2811.00100000000010000000
....................................................................................................................................................................................................................................................TAA--CGGTACAGTGGGCACAATA-------------------------AGAA..................2611.00100000001000000000
....................ATTATTGTAATTCTGTTTAAGGGGTA.............................................................................................................................................................................................................................................................................2611.00100000000010000000
.........................................................................................................................................................................................................................................TCCAGTTACACTAA--CGGTACAGTGG.......................................................2511.00100000000010000000
........................................................................................................................................................................................................GCTTA-GATATTGTCGATACACTTAA--T......................................................................................2611.00100000000010000000
...............TCTTTATTATTGTAATTCTGTTTA....................................................................................................................................................................................................................................................................................2411.00100000000010000000
..................................................TATACTATTTTGATCGAATTCA--AAT..............................................................................................................................................................................................................................................2511.00100000001000000000
.........TCTGTATCTTTATTATTGTAATTCTGTT......................................................................................................................................................................................................................................................................................2811.00100000000010000000
...............................................AAGTATACTATTTTGATCGAATTCA--A................................................................................................................................................................................................................................................2611.00100000001000000000
.......................................................................................................................................................................................................TGCTTA-GATATTGTCGATACA..............................................................................................2111.00100000000010000000
...............................................................................................................................................................................................................................TAA--TTGCTTCCAGTTACACTAA--CGG...............................................................2511.00100000001000000000
.............................................AGAAGTATACTATTTTGATCGAATTCA--A................................................................................................................................................................................................................................................2811.00100000001000000000
..........CTGTATCTTTATTATTGTAATTCTG........................................................................................................................................................................................................................................................................................2511.00100000000010000000
..........................................................................................................................................................................................................TTA-GATATTGTCGATACACTTAA--TTGC...................................................................................2711.00100000000010000000
..........................................................................................................................................................GGTTTTTCTATATGCTTAT--AAGTGA------................................................................................................................................2511.00100000001000000000
......................................................................................................................................................................................................TTGCTTA-GATATTGTCGATACACTTA..........................................................................................2611.00100000000010000000
........................TTGTAATTCTGTTTAAGGGGTAGAAGTA.......................................................................................................................................................................................................................................................................2811.00100000001000000000
...........................................................................................................................................................................................................TA-GATATTGTCGATACACTTAA--TTGC...................................................................................2611.00100000000010000000
......................TATTGTAATTCTGTTTAAGGGGTAGAAGTA.......................................................................................................................................................................................................................................................................3011.00100000001000000000
..................................GTTTAAGGGGTAGAAGTATACTATT................................................................................................................................................................................................................................................................2511.00100000001000000000
......................................................................................................................................................................................................TTGCTTA-GATATTGTCGATACACTTAA--T......................................................................................2811.00100000000010000000
.................................................................................................................................................................................................................ATTGTCGATACACTTAA--TTGCTTCT...............................................................................2511.00100000000010000000
..................................................................................................................................................................TATATGCTTAT--AAGTGA------TTTTAAA.........................................................................................................................2411.00100000000010000000
........................................................................................................................................................................................................................................TTCCAGTTACACTAA--CGGTACAGTGGG......................................................2711.00100000001000000000
droSec2
C----------------TTTATTATTGTAATTCTGTTTAAGGGGTAGAAGTATACTATTTTGATCGAATTCA--AATTTTGCAAA----------T---------ATATTTTACACACATCTTACCAAATTT--TAC--ATTTA--AAATACATGGTTTTTGTATATGCTGAT--AAGTGA------TTTTAAAAACATTGCTTA-GATATTGTCGATACACTTAA--TTGCTTCCAGTTACACTAA--CGGTACAGTGGGCACAATA-------------------------AGAAAAGTTAACCAAAACTCGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TATTTATTTTTTGTATCTTTATTATCGTAATTTCGTTTAAAGGGTAGAAGTGTACTTTTTTGTTCGAGTTCA--AATTTTACAAA----------T---------ATATTTTACACACATCCTACAAAATTT--TAC--ATTTA--AAATACATGGTTTTTGTCTATGCTGAT--AAGTGA------TTTTAAAAACATTGCACA-GATATTGTCGATACACTCAA--CTGCTTCCAGTTACACTAACGCT--ACAGTGGGCACAACA-------------------------AGAAAAGTTAACCAAAACTCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................TACAAAATTT--TAC--ATTTA--AAATACA..................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TTTTTGTCTATGCTGAT--AAGTGA------TTT.............................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CATTGCACA-GATATTGTCGATACACT............................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TCGTTTAAAGGGTAGAAGTGT......................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTCGTTTAAAGGGTAGAAGTG.......................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATTGTCGATACACTCAA--CTGC...................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTTAAAGGGTAGAAGTGTACT...................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ATTGCACA-GATATTGTCGATA................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAAA----------T---------ATATTTTACACACATC..................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGAAGTGTACTTTTTTGTTCG.........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................TATCGTAATTTCGTTTAAAGG................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATTTCGTTTAAAGGGTAGAAGTGT......................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................TCGAGTTCA--AATTTTACAAA----------T---------ATATT.............................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCGTAATTTCGTTTAAAGGGTAGAAGTG.......................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................CACTAACGCT--ACAGTGGGCACAACA-------------------------AGA...................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................CACA-GATATTGTCGATACACTC...........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................ATGGTTTTTGTCTATGCTGAT--............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TAGAAGTGTACTTTTTTGTTCGAGT......................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAATTT--TAC--ATTTA--AAATACT..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TAACGCT--ACAGTGGGCACAAC................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTTTGTATCTTTATTATCGTA..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TATTATCGTAATTTCGTTTAAAGGG...............................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........TTTTGTATCTTTATTATCGTT..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TTTTTGTCTATGCTGAT--A...........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................ACACACATCCTACAAAATTT--T....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CGATACACTCAA--CTGCTTCCA..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTGTCGATACACTCAA--CTGCTTCCAGT............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TTTAAAGGGTAGAAGTGTACTT..................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................GATATTGTCGATACACTCAA--CTGC...................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................TTTGTCTATGCTGAT--AAGTGA------TTTTA...........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACGCT--ACAGTGGGCACAACA-------------------------AGAAAAG...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................AACATTGCACA-GATATTGTCG...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................CAA--CTGCTTCCAGTTACACTAACGC.................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTCGTTTAAAGGGTAGAAGTGTACTTT.................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTGCACA-GATATTGTCGATAC...............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................ACTTTTTTGTTCGAGTTCA--AA...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTGCACA-GATATTGTCGATACACTCAA--C......................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TCGATACACTCAA--CTGCTTCCAGTTACAC.......................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TACACTAACGCT--ACAGTGGGC.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTAATTTCGTTTAAAGGGTAG............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................T--TAC--ATTTA--AAATACATGGTTTTTGTC.......................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCGTAATTTCGTTTAAAGGGTA.............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................TATTGTCGATACACTCAA--CTGCTTC................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TTGTCGATACACTCAA--CTGCTTCCA..............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TATTGTCGATACACTCAA--CTGCTT.................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTT--TAC--ATTTA--AAATACATGGTTTTTG.........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................CTATGCTGAT--AAGTGA------TTTTA...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCGTAATTTCGTTTAAAGGGT..............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TAGAAGTGTACTTTTTTGTTCGAGTT.....................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GGTTTTTGTCTATGCTGAT--AA..........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GTAATTTCGTTTAAAGGGTAGAAGTG.......................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATCGTAATTTCGTTTAAAGGGT..............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATCGTAATTTCGTTTAAAGGGTAGAA..........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
G-----------------------------------------------------------------AATTTAATAATTTTACACA----------TAGTTTTTACACATTTTACACGTATTTTACACATCTC--TGC--CTTCC--AAATCTCCGGTTCGTGTCTAGAATAAG--AAGAGG------TTTTCGAACCATTGCTCA-GAGGTTGCTGGC-------A--TTGCTTTCAGTTGCACTAAATCTGGACAGTGGCCACAAAACTGTTT---------------------CAATTTCAACCGAAACTCGASizeHit CountTotal NormTotal
No Reads
droBia1
C----------------------------------------------------------------------A--TATTTTCCAA-----------GACTTTTTACACATATTACACATATTTTACACAGTT-------------------CACCGGTTTGCGTCTACGCTGAC--AGCCGG------GTCTCGAACCCTTGC---------------------TAA--TTGCTTTCAGTTGCTCTAAAACTGTACAGTGCTTGC----------------TCAAATCGAATTTCGAAGTCTCAGCCGAAACTCGASizeHit CountTotal NormTotal
No Reads
droTak1
A-------------------------------------------------------------------CCCA--TATTTTACAA-----------GACTTTTTACACATTTTACACATATTTTACATAGCTC--TGC--GTTCG--AAATCTCCGGCTTGTGTCTACGCTGACTTTGCTGG------TTTAGGAACCATTGCTCAAGAGGTTGGCGGCACGACTAA--TTGCTTTCAGTTTCACTAAAACTGTAAATTAACTACAAAACTGTTTTAAAATTCGATTT--------AAATTTCAACCGAAACTCGASizeHit CountTotal NormTotal
No Reads
droEle1
A----------------------------------------------------------------------------------------------CATATTTTACACATCTTAAACATATTTTAAAATATTC---------------TCTATATGGTTTTTGTCTAGACTGAC--AGCTGG------TTTAAGAAAGATTGTTCA-G-GGTTGTTGGCCCGACTAA--TCGCTTCCAGTTGCTCTAAAGCTGCACAGTGACCAGAAAACTGTACTA----CCAAATT--------GTATTTCAACCAAAACTCGASizeHit CountTotal NormTotal
No Reads
droRho1
A---------------------------------------------------------------------------TTTTACACATTTTTTACAAGACATTCTTTACGACTTAAACTTATTTAAAAATATTCTCTGT--ACTCA--GCATTTCCGGTTTTTGTCTAGACTGAC--AGATGGTTTTGGTTTTGGAGCGATTGCTTA-G-GGTTGTCGGCACGACTAA------TTCCAGTTGCCAAGAAA---CACAGTGACCACAAAACTGTTTAC-TTTTGAAATT--------GAATTTCAACCGAAACTCGASizeHit CountTotal NormTotal
No Reads
droFic1
A----------------------------------------------------------------------------------------------AACCTTCTAGACATACAACAAATATTTTACAGTGTTT--CTCGTA-CTA--AGACCACTGGTTTTTGTCAACACTGAC--AGTTGG------TTTTGGAACCATTGCTCA-GGTTTTGTCGAAACGACTGA--TTGCTTCCAGTGGCACTAAAACTGCACAGTGACCACGGCACTGTTTGC----CTTAATC--------AAATTTTAACCAAAACTTGASizeHit CountTotal NormTotal
No Reads
droKik1
C---------------------------------------------------------------------------------A------------GACATTTTATACG-------TAAATTTAAGTTTAGTT--TCC--ACGTCAAACACATCAGGTTTGTGCCTTGGCTGAG---------------TTG---AAAATTGCTCATTGGGTTGTCGTCGTGACTAATATTGCTTCCACTTGTTGTAAAACT--------------TTG-------------------------GTAAATTTTAACCAAAACTCGASizeHit CountTotal NormTotal
No Reads
droAna3
G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACCGAAACTCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACCAAAACTCGASizeHit CountTotal NormTotal
No Reads
dp5
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 09:56 PM