ID:

dsi_20075

 Coordinate:

3r:24318667-24318816 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_24318817_24318974_+]; exon [3r_24318817_24318974_+]; intron [3r_24318064_24318816_+]

Repeatable elements

NameClassFamilyStrand
(CCAA)nSimple_repeatSimple_repeat+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACCTTATTGTTTATTATTAATTTTTTGACTCTTCGGTTACTTTATTATGCGTTTTACATTTTGTTTTTCCATATCAATCAATACACAATCAATCAACCAACAAACCAACCAACACCTCCCCGACCAAAAATCAATAAACCGAAAAACCAAACCGCACACAACACGTACACCCACCAAAAACACCACCCAATGACCCAAGTCGGTGCCCACGGTGTACAAGTCGAGTAGCGCATACTCATCCAGCAAATA
**************************************************.............(((((((.......................................................................)))))))....................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.......................................................................................................................................................................................................................TACAAGTCGAGTAGGG................... 16 1 1 1.00 1 0 1 0 0 0 0
....................ATTTTTTGACTCTTCGGTTACT................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................CGCACGGTGTACGAGTCGA......................... 19 2 2 0.50 1 0 0 1 0 0 0
..........TCTATTATTAATTTTTTAACTCTA........................................................................................................................................................................................................................ 24 3 4 0.25 1 0 0 0 1 0 0
..............................................................................................................................................................................................................CGCACGGTTTACACGTCGA......................... 19 3 5 0.20 1 0 0 1 0 0 0
........................................................................TATCGATCAATACACAGT................................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 1 0
...............................................................................................................................................................................................TGTCCCAAGTCGGTCGCCA........................................ 19 3 19 0.05 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................AGCAGAGTAGCGCATACC............. 18 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TTGGAATAACAAATAATAATTAAAAAACTGAGAAGCCAATGAAATAATACGCAAAATGTAAAACAAAAAGGTATAGTTAGTTATGTGTTAGTTAGTTGGTTGTTTGGTTGGTTGTGGAGGGGCTGGTTTTTAGTTATTTGGCTTTTTGGTTTGGCGTGTGTTGTGCATGTGGGTGGTTTTTGTGGTGGGTTACTGGGTTCAGCCACGGGTGCCACATGTTCAGCTCATCGCGTATGAGTAGGTCGTTTAT
**************************************************.............(((((((.......................................................................)))))))....................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR1275483
Male prepupae		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
...............................................................................................................................................................................................ACTGGGTTCAGGCACGG.......................................... 17 1 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTTTGTGGTGGGTTA.......................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................AGTTATTTGGCTTTTTGGTTT.................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................TTTTTGTGGTGGGCTAGTG....................................................... 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0
...........AATAATAATAAAAAAACTCACAAG....................................................................................................................................................................................................................... 24 3 4 0.50 2 0 0 0 2 0 0 0 0 0
................................................................................................................................................................................TTTTTGTGGTGGGCTA.......................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0
.................................................................................................................................TCAGTTATTTGGCCATTTGGT.................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................GTTAGTTATGTGTTAG............................................................................................................................................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTTTGTGGTGGGCTA.......................................................... 15 1 8 0.38 3 1 0 0 0 1 0 0 1 0
...................................................................TAGGTATAGCTAGTTA....................................................................................................................................................................... 16 2 20 0.35 7 0 1 0 0 6 0 0 0 0
...............................................................................................................................................................................TTTTTTGTGGTGGGCTA.......................................................... 17 2 20 0.35 7 1 0 5 0 0 0 1 0 0
.................................................................................................................................................................................................TGGGTTCAGGCACGG.......................................... 15 1 17 0.24 4 4 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTGGGTTCAGGCACGG.......................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGTGCCACATGCTCAGA.......................... 17 2 7 0.14 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................................GGTGTGGCGTGCGTTGTG..................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 1 0
.........................................................................................................................................TTGGCTTTTAGGTTTGG................................................................................................ 17 1 8 0.13 1 0 0 0 0 0 0 1 0 0
........................................................................................................................GGCTGGTTTGTGGTTATT................................................................................................................ 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................GGTTACTGGTTTGAGCGACG........................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0
.......................................................................................................TAGGGTGGTTGCGGAGGGGC............................................................................................................................... 20 3 12 0.08 1 0 0 0 1 0 0 0 0 0
................................................................AAAAAGGGATCGTTAGTT........................................................................................................................................................................ 18 2 15 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTTTTGTGGTGGGCTAGTGT...................................................... 20 3 17 0.06 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................TTTTGTGGTGGGTTAGGG....................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................GGGGTTCAGGCACGGGTCC...................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................AGGTATAGCTAGTTA....................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
.........................................................GGAAAGAAAAAAGGTATAGT............................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.......................................................................................TTAGTTAGGTGGTTGAT.................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTTGTGGTGGGCTACGG....................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................TTTTTGTGGTGGGCTAG......................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:24318617-24318866 + dsi_20075 A--------A----------CCTTAT-TGTTTATTATTAATTTT------------TTGA-C-TCTT----------CGGTTACTTTATTA----TGCGTTT--------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAACCAACA------------------------------------------------AACCAACC----AACACCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA----AAAAC----------------CAA--ACCGCACACAACACG----TACAC---------------------CCA-C--------------------CA---------------------------------------AAAACACCACC---------------CAATGA------------CCC--------------------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-GTA--------GCGCA---TACTCATCCAGCAAATA
droSec2 scaffold_4:3823394-3823651 + A--------A----------CCTTAT-TGTTTATTATTAATTAT------------TTGA-C-TCTT----------CGGTTACTTTATTA----TGCGTTT--------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAATCAA----CC-----AACA-----------------------------------AACCAACCAACCTACACCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA----AAAAC----------------CAA--ACTGCACACAACACG----TACAC---------------------CCA-C--------------------CA---------------------------------------AAAACACCACC---------------CAATGA------------CCC--------------------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-GTA--------GCGCA---TACTCATCCAGCAAATA
dm3 chr3R:24958776-24959043 + A--------G----------CCTTAT-TGTTTATTATTAATTAT------------TTGACTTTTTT----------CGGTTACTTTATTA----TGCGTTT--------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAATCAATCAACC-----AACCAA---------C------------------CAACCAACCAACC----AACACCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA----AAAAC----------------CAA--ACCGCACACAACACG----TACAC---------------------CCA-C--------------------CA---------------------------------------AAAACACCACC---------------CAATGA------------CCC--------------------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATA
droEre2 scaffold_4820:3072756-3073025 - A--------G----------CCCTAT-TGTTTATTATTAATTAT------------TTGA-CTTTTT----------CGGTTACTTTATTA----TGCGTTT--------TACGT-TTTGTTTTTCCATAT--CAATCAATTCACAAT----C----------------------AATCAATCAA----CC-----AACA---------------------------------------------------CCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGC----AAAAC----------------AAA--ACCGCACACAACACG----TACAT---------------------CCA-C--------------------CA---------AAA--------------------------CAAAACACCAC----------------CAATGA------------CCTG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TGGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATA
droYak3 3R:21539345-21539613 - A--------G----------CCTTAT-TGTTTATTATTATTTAT------------TTGA-CTTTTT----------CGTTTACTTTATTA----TGCGTTT--------TACAT-TTTGTTTTTCCATAT--CAATCAATTCACAAT----C----------------------AATCAATCAA----CC-----AACA---------------------------------------------------CCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-TGC----AAAAC----------------AAA--ACCGCACACAACACG----TACAC---------------------CCA-C--------------------CA---------AA----------------------------AAAACACCACC---------------CAATGA------------CCTG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATA
droEug1 scf7180000409787:616739-617016 - A--------A----------TCTTAT-TGTTTAGTATTAATTAT------------TTGA-TATTTT----------CGGTTATTTTATTA----TGCGTTTT-------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAATCAA----CC-----AACC---------------------------------------------------ACTCCCCGACCAAAA--A------------------TCA-------------------------A-AAAC-CGA--TA-A-------AA--A----CACAAA--ACTGCACAAACCACG----AACAC---------------------CCA-A--------------------CA---------AAA--AAC---------------------CAAAACACCAAC---------------CAATGC------------CCTG--------------CCCAA----------------------------TA-TT----GAT-GGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCACA---TACTCATCCAGCAAATA
droBia1 scf7180000302136:3186044-3186329 - C--------A----------CCTTAT-TGTTTAGTATTAATTAT------------TTGA-TATTTC----------CTTTTATTTTATTA----TGCGTTTT-------TACAT-TTTGTTTTTCCATAT--CAATCGATACACAAT----C----------------------AATCAATCAA----CC-----AACC---------------------------------------------------ACTCCCCGACCAAA---A------------------TCA-------------------------ATAAAC-CGAA-TA-A-----AAAA--ACACCCACAAA--ACTGCACACACCACG----AACAACCAAC----------------CCAAC--------------------CA---------------------------------------CAAACACCACC---------------CAATGC------------CCTG--------------CCCAC----------------------------TG-CC----GGT-TGTG------TGTTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATA
droTak1 scf7180000415310:213491-213772 + A--------A----------CCTTAT-TGTTTAGTATTAATTAT------------TTGA-TATTTT----------CTTTTATTTTATTA----TGCGTTTT-------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAATCAATCAACC-----AACC---------------------------------------------------ACTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA--TA-A-AA-AAAAA--A----CACAAA--ACTGCACACACCACG----AACAC---------------------CCAAC--------------------CA---------------------------------------AAAACACCACC---------------CAATGC------------CCTG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATA
droEle1 scf7180000491280:1139216-1139503 + C--------A----------GCTTAT-TGTTTAGTATTAATTAT------------TTGA-AATTTT----------CGGTTATTTTATTA----TTCGTTTT------CTACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AAACAATCAATCAACC-----AAAC---------------------------------------------------ACTCCCCGACCAAAA--A------------------C--------------------------------C-CGA----AAAA-----AT--A----CACAAA--ACCGCACACACCACG----AAC--CCAACGCCCAATCAAAAA--A---------------------AAAAAA---------------------------------------AAAACACCACC---------------CAATGC------------CACG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTATAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATA
droRho1 scf7180000779516:57256-57530 - C--------A----------GCTTAT-TGTTTAGTATTAATTAT------------TTGA-TATTTT----------CGGTTATTTTATTA----TGCGTTTT------CTACAT-TTTATTTTTCCATAT--CAATCAATACACAAT----C----------------------AATAAATCAATCAACC-----AACC---------------------------------------------------ACTCCCCGACCAAAA--A------------------TCA-------------------------A-AAAC-CGA----AA-------AT--A----CACTAA--ACCGCACACACCACG----AACAC---------------------CCA-A--------------------TA---------------------------------------AAAACACCACC---------------CAATGC------------CACG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTATAAGTCGA-GTG--------GCGCA---TACTCATCTAGCAAATA
droFic1 scf7180000453776:253534-253799 + C--------A----------CCTTAT-TGTTTAGAATTAATT-T------------TTTA-TATTTT----------TGGTTATTTTATTA----TCCGTTTT-------TCCAT-TTTGTTTTTCCATAT--CAATCAATACACAAA----C----------------------AATCAA--------CC-----AACC---------------------------------------------------ACTCCCCGACCAAAA--A------------------TCA-------------------------A-AAAC-CGAAACA-A-------AA--A----CGCAAA--ACTGCACACAACACG----AACAC---------------------CAA-----------------------A---------------------------------------AAAAAATCACC---------------CCCTGC------------CCCG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GTGCA---TACTCATCCAGCAAATA
droKik1 scf7180000302466:523951-524257 - T--------T----------A--------GTTATTATTGATTTA--------TTTCCTGA-TATATT----------TGGTTATTTTATTA----TGCGTTTT-CT---TTACATTTTTGTTTTTCCAT----CAATAAA-------TCAATC----------------------GAT---TCAA----TCAACCCA--------------------------------------------------------ACCCCGACCCC----------TGACG--------TTA-----------------CAACACCAA-AAAA---------------AAAA--ACACACACTGCAAAATGC--ACAACACG----AAAAC---------------------ACA-C--------------------AA---------------------------------------CAATC---------------------TACTGC------------CTC-------TGCCTCTGCCACCTGCCACCTGCTCCTTT-TTTT-------GGTT----TGGTGTGTGTATGTGTGTGGAC-CAAGTCGGTGCCCACGGTTTACAAGTCGA-GTG--------GCGCAACGTACTCATCCAGCAAATA
droAna3 scaffold_12911:4016654-4016946 + dan_422 A--------A----------GCTTAT-TGTTTAGTATTAATCAT------------TTGA-TATTTT----------TGGTTATTTTATTA----TGCGTTTT------TTACAT-TTTATT-TTCCATAT--CAATCAATAAA---TCAATC----------------------AATCAATCAA----TC-----AAC----------------------------------------------------CCACCCCGACCAAAA---------------------TA-----------------------------AAA-ACA----AAAACAAAAAA--ACACT---TGA--AATGCACGCACCACA----CAAAAAAAACAC--------------AAA-A--------------------AA---------------------------------------AAAACAATGAA---------------AAATGA------------ATC-------ACCATCCACCA------------------CC--C-------TG-CC---TGGT-TGTGT-TG----TGGTTGGAAGTCGGTGCCCACGGTGTACAAGTCAA-GTA--------GCGCA---TACTCATCCGCCAAATA
droBip1 scf7180000396640:865131-865429 + -----------------------TAT-TGTTTAGTATTAATCAT------------TTGA-TATTTT----------CGGTTATTTTATTA----TGCGTTTT------TTACAT-TTTATT-TTCCATAT--CAATCAATTTACAAT----C----------------------AATCAATCAA----TC-----AAC----------------------------------------------------CCACCCCGACCAAAATAA----------------AATCAAAAACAAACCAAAATCACAAAAACAA-AA-------ACA--------AAA--A----CACTAAACAATGCACGCACCAC------ACAA---------------------CCA-C--------------------TA---------AAA--CAA---------------------CGAAACAATA-C---------------CAATGA------------ATC---------------ACCAC----------------------------TG-CC---TGGT-TGTGT-TG----TGGTTGGAAGTCGGTGCCGACGGTGTACAAGTCAA-GTA--------GCGCA---TACTCATCCGCCAAATA
dp5 2:8702527-8702836 + C--------GACCCCCCTCTCCTTAT-TGTTTAGTATTAATTTAATGATCTTTTTTTTGC-TATTTT----------TGGTTATTTTATGA----TTCGTTTT-------TTCGT-TTTGTTTTTCCATAT--CAATCAATATAT--C----C----------------------AATCAATC-------C-----AACC---------------------------------------------------ACACCTTGACCAAAACAA------------------AAA-------------------------AAAAAC-ACC----CAAAC----------------CAA--CCCACACAAAAAA-------------------------------A---------------------CAACAA---------------------------------------CACACACCACACACATACACACCCCGTACTGC--------CCGTCCTGCCCGTT------------C-------------------TGCCGCCGCCG---CCCCGGT-TGTG--------TTGTC---AGTCGGTGCCCACGGTGTACCAGTCGA-GTG--------TCCCC---CGTTCATCAAACAAATA
droPer2 scaffold_0:2515940-2516255 + GCCAGGACCGACCCCCCTCTCCTTAT-TGTTTAGTATTAATTTAATGATCTTTTTTTTTC-TATTTT----------TGGTTATTTTATGA----TTCGTTTT-------TTCGT-TTTGTTTTTCCATAT--CAATCAATATAT--C----C----------------------AATCAATC-------C-----AACC---------------------------------------------------ACACCTTGACCAAAA--A------------------AAA-------------------------AAAAAC-ACC----CAAAC----------------CAA--CCCACACAAAAAA-------------------------------A---------------------CAACAA---------------------------------------CACACACCACACACACACACACCCCGTACTGC--------CCGTCCTGCCCGTT------------C-------------------TGCCGCCGCCG---CCCCGGT-TGTG--------TTGTC---AGTCGGTGCCCACGGTGTACCAGTCGA-GTG--------TCCCC---CGTTCATCAAACAAATA
droWil2 scf2_1100000004902:5481572-5481904 + A--------A----------ATG-A--TTTTTATTATT---TCT---------------G-TATTA--------------TTA-TTTATTA----TGCGTTTTTCTTTATAACTT-TTTATTTTTCCATAT--CAATCAATCA-AAAA----C----------------------AATCAAACAA-------------TA------------------------------------CCTACCC-AAT--TACCTACCTGAAAAACA--A------------------TCA-------------------------ATCAATTTGA----AAAAC-CAAAAACA----CACAC---AATGT--GCACCAC------CCAC---------------------CCA-CAAATACACACGAAAAA----CC------------GAAACTGAAACCGAAATACCCGAAAACAA----AAACC---------------CAAAAACCGAAAACCCGCCCCA----------T-CA------------------TTACTTTGCGAC---TG-TT----GAC-TATG------TGTTGAT---AGTCGGTACCAACGGTGTATAAGTCCA-AT-----------GTA---TATTCATCCAACAAATA
droVir3 scaffold_13047:15243165-15243445 - -------------------------T-TGATTAGCGTTGATTGT------------TCTA-TATTTT----------TGTTTATTTTAT--ATTATTTGTTTT-------TACGT-TTTATT-TTCCATAT--CAATCAAA------T----CAATTCAA--------TATACCCAAT----------------------AC--------------------------------AAACGAACC--------AATACCCCG---------AACCCTGCAAACGCACAAACCAAACCAAACCAAAACC--AAAACCAA-AA-------CCA----------------------AC-----------AA--CA----TC-----------CCTCATAAACAA-CAA--------------------------------------------------------------CACAACAACA-------------------CCGC------------CACG--------------------------------TT--TCTC-------CGCC----CGAT-TGTG--------TTGCC---AGTCGGTGCCAATGGTTTACAAA--AA-GTC---------CACA---CATTCATCAAAACAATA
droMoj3 scaffold_6540:18723070-18723366 - A--------T----------ATCAATATGATTAGCTTTAATTGT------------T-----ATTTATATATTTTGTTGTTTATTTTAT---------------------TACGT-TTTATT-TTCCATATACCAATCAAAACA-ATT----C-----AA--------AATATCCA---------AA-----AT------AC---------A----------------------AAACGAACC-------AAATACCCGAAC----------CCTGCAAATG-----------------------------------------------------------------CAATGC--AATGCA----CCACCCAAAATA--CCAACACCCCATATATACAA-CCA-A--------------------CACAAACACCACCA--CAC---------------------CACCCCAACA-A---------------CAA---------------CACG--------------------------------TTA-TTTC-------CGCC----CGGT-TGTG--------TTGCC---AGTCGGTGCCGATGGTTTACAAATCCACGTC---------GACA---TATTCATCAAACAAATA
droGri2 scaffold_14830:4739374-4739681 + A--------A----------TTG----TATTTAATATT---TAT------------TTAC---TCTT----------TGGTTATTTTTAT-TTTATTTGTCTT------TTACGT-TTTATTTTTTCATAT-----TCAATTCAAACG----C-----AAAACAAAACCCTATGCA---------AA-----AT------ACCCAAAAAAAAAAAAAAAAAACAAACAAT---CAAACGAAC---------GAACCCCGAAA-------TACCCTGCAAATGCA----------------------------------------------------------------AATGCACAATCGA----CCAC--AAAATA--C-----------AC-------ATA-C----------------CAACAA---------------------------------------C---------ACACACACA-------------------------CATG--------------------------------TT--TATA-------CG---CCCCGGT-TGTG--------TTGCC---AGTCGGTGCCAACGATTTACAAATCGA-CCACAACAACAACAAAT--CGTTCATCAAACAAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A--------A----------CCTTAT-TGTTTATTATTAATTTT------------TTGA-C-TCTT----------CGGTTACTTTATTA----TGCGTTT--------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAACCAACA------------------------------------------------AACCAACC----AACACCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA----AAAAC----------------CAA--ACCGCACACAACACG----TACAC---------------------CCA-C--------------------CA---------------------------------------AAAACACCACC---------------CAATGA------------CCC--------------------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-GTA--------GCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................ATTTT------------TTGA-C-TCTT----------CGGTTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
droSec2
A--------A----------CCTTAT-TGTTTATTATTAATTAT------------TTGA-C-TCTT----------CGGTTACTTTATTA----TGCGTTT--------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAATCAA----CC-----AACA-----------------------------------AACCAACCAACCTACACCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA----AAAAC----------------CAA--ACTGCACACAACACG----TACAC---------------------CCA-C--------------------CA---------------------------------------AAAACACCACC---------------CAATGA------------CCC--------------------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-GTA--------GCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
A--------G----------CCTTAT-TGTTTATTATTAATTAT------------TTGACTTTTTT----------CGGTTACTTTATTA----TGCGTTT--------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAATCAATCAACC-----AACCAA---------C------------------CAACCAACCAACC----AACACCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA----AAAAC----------------CAA--ACCGCACACAACACG----TACAC---------------------CCA-C--------------------CA---------------------------------------AAAACACCACC---------------CAATGA------------CCC--------------------------------------------------------------------------------AAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTCGA-GTG--------GCGCA---TACTCA...........2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGTACAAGTCGA-GTG--------GCGC.....................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................................................TCAATCAACC-----AACCAA---------C------------------CAACCAACCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2921.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACGGTGTACAAGTCGA-G...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGTCGA-GTG--------GCGCA---TACTCATCCA.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................TCAACC-----AACCAA---------C------------------CAACCAACCAACC----AAC........................................................................................................................................................................................................................................................................................................................................................................................................................2921.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CCAACCAACC----AACACCTCCC.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGTGTACAAGTCGA-GTG--------GCG......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTCGA-GTG--------GCGCA---TACTCA...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA-GTG--------GCGCA---TACTCATC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAAGTCGA-GTG--------GCGCA---T................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGTACAAGTCGA-GTG--------GC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTGTACAAGTCGA-GTG--------GCGCA---.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCACGGTGTACAAGTCG......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................TTTT----------CGGTTACTTTATTA----TGCGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAAGTCGA-GTG--------GCGC.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGA-GTG--------GCGCA---TACTCATCCAGCA....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TACAT-TTTGTTTTTCCATAT--C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CCGACCAAAA--A------------------TCA-------------------------ATAAAC-CG..............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA----A........................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACAAGTCGA-GTG--------GCGC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTGTACAAGTCGA-GTG--------GCGC.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACAAGTCGA-GTG--------GCG......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGA-GTG--------GCGCA---TACTCAT..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTTATTA----TGCGTTT--------TACAT-TTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................CC----AACACCTCCCCGACCA...........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................ATCAACC-----AACCAA---------C------------------CAACCAACCAACC----...........................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AATCAATCAACC-----AACCAA---------C------------------CAACCAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AATCAATCAACC-----AACCAA---------C------------------CAACCAACCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................3020.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................AATCAACC-----AACCAA---------C------------------CAACCAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TCAACC-----AACCAA---------C------------------CAACCAACCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CC-----AACCAA---------C------------------CAACCAACCAACC----AACA.......................................................................................................................................................................................................................................................................................................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CCAA---------C------------------CAACCAACCAACC----AACA.......................................................................................................................................................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACC-----AACCAA---------C------------------CAACCAACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ACCAA---------C------------------CAACCAACCAACC----AAC........................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACC-----AACCAA---------C------------------CAACCAACCAACC----A..........................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................C-----AACCAA---------C------------------CAACCAACCAACC----AAC........................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACC-----AACCAA---------C------------------CAACCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CC-----AACCAA---------C------------------CAACCAACCAACC----...........................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CCAA---------C------------------CAACCAACCAACC----A..........................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CCAA---------C------------------CAACCAACCAACC----...........................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AACCAA---------C------------------CAACCAACCAACC----AA.........................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACC-----AACCAA---------C------------------CAACCAACCAACC----AAC........................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ACC-----AACCAA---------C------------------CAACCAACCAACC----AA.........................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AACC-----AACCAA---------C------------------CAACCAACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CAACC-----AACCAA---------C------------------CAACCAACCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ACCAA---------C------------------CAACCAACCAACC----A..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................CAACC-----AACCAA---------C------------------CAACCAACCAACC----...........................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TTAT-TGTTTATTATTAATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
droEre2
A--------G----------CCCTAT-TGTTTATTATTAATTAT------------TTGA-CTTTTT----------CGGTTACTTTATTA----TGCGTTT--------TACGT-TTTGTTTTTCCATAT--CAATCAATTCACAAT----C----------------------AATCAATCAA----CC-----AACA---------------------------------------------------CCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGC----AAAAC----------------AAA--ACCGCACACAACACG----TACAT---------------------CCA-C--------------------CA---------AAA--------------------------CAAAACACCAC----------------CAATGA------------CCTG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TGGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAGTCGA-GTG--------GCGC.....................1812.0020100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACAAGTCGA-GTG--------G........................1811.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-TGTG--------TGGCCAAAAGTCGGT.........................................................2211.0010001000
droYak3
A--------G----------CCTTAT-TGTTTATTATTATTTAT------------TTGA-CTTTTT----------CGTTTACTTTATTA----TGCGTTT--------TACAT-TTTGTTTTTCCATAT--CAATCAATTCACAAT----C----------------------AATCAATCAA----CC-----AACA---------------------------------------------------CCTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-TGC----AAAAC----------------AAA--ACCGCACACAACACG----TACAC---------------------CCA-C--------------------CA---------AA----------------------------AAAACACCACC---------------CAATGA------------CCTG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA-GTG--------GCGCA---TACTCATC.........2111.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACAAGTCGA-GTG--------GCGCA---TA...............2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGTGCCCACGGTGTACAAGTCGA-....................................2611.00101000000000
droEug1
A--------A----------TCTTAT-TGTTTAGTATTAATTAT------------TTGA-TATTTT----------CGGTTATTTTATTA----TGCGTTTT-------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAATCAA----CC-----AACC---------------------------------------------------ACTCCCCGACCAAAA--A------------------TCA-------------------------A-AAAC-CGA--TA-A-------AA--A----CACAAA--ACTGCACAAACCACG----AACAC---------------------CCA-A--------------------CA---------AAA--AAC---------------------CAAAACACCAAC---------------CAATGC------------CCTG--------------CCCAA----------------------------TA-TT----GAT-GGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCACA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droBia1
C--------A----------CCTTAT-TGTTTAGTATTAATTAT------------TTGA-TATTTC----------CTTTTATTTTATTA----TGCGTTTT-------TACAT-TTTGTTTTTCCATAT--CAATCGATACACAAT----C----------------------AATCAATCAA----CC-----AACC---------------------------------------------------ACTCCCCGACCAAA---A------------------TCA-------------------------ATAAAC-CGAA-TA-A-----AAAA--ACACCCACAAA--ACTGCACACACCACG----AACAACCAAC----------------CCAAC--------------------CA---------------------------------------CAAACACCACC---------------CAATGC------------CCTG--------------CCCAC----------------------------TG-CC----GGT-TGTG------TGTTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droTak1
A--------A----------CCTTAT-TGTTTAGTATTAATTAT------------TTGA-TATTTT----------CTTTTATTTTATTA----TGCGTTTT-------TACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AATCAATCAATCAACC-----AACC---------------------------------------------------ACTCCCCGACCAAAA--A------------------TCA-------------------------ATAAAC-CGA--TA-A-AA-AAAAA--A----CACAAA--ACTGCACACACCACG----AACAC---------------------CCAAC--------------------CA---------------------------------------AAAACACCACC---------------CAATGC------------CCTG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droEle1
C--------A----------GCTTAT-TGTTTAGTATTAATTAT------------TTGA-AATTTT----------CGGTTATTTTATTA----TTCGTTTT------CTACAT-TTTGTTTTTCCATAT--CAATCAATACACAAT----C----------------------AAACAATCAATCAACC-----AAAC---------------------------------------------------ACTCCCCGACCAAAA--A------------------C--------------------------------C-CGA----AAAA-----AT--A----CACAAA--ACCGCACACACCACG----AAC--CCAACGCCCAATCAAAAA--A---------------------AAAAAA---------------------------------------AAAACACCACC---------------CAATGC------------CACG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTATAAGTCGA-GTG--------GCGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droRho1
C--------A----------GCTTAT-TGTTTAGTATTAATTAT------------TTGA-TATTTT----------CGGTTATTTTATTA----TGCGTTTT------CTACAT-TTTATTTTTCCATAT--CAATCAATACACAAT----C----------------------AATAAATCAATCAACC-----AACC---------------------------------------------------ACTCCCCGACCAAAA--A------------------TCA-------------------------A-AAAC-CGA----AA-------AT--A----CACTAA--ACCGCACACACCACG----AACAC---------------------CCA-A--------------------TA---------------------------------------AAAACACCACC---------------CAATGC------------CACG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTATAAGTCGA-GTG--------GCGCA---TACTCATCTAGCAAATASizeHit CountTotal NormTotal
No Reads
droFic1
C--------A----------CCTTAT-TGTTTAGAATTAATT-T------------TTTA-TATTTT----------TGGTTATTTTATTA----TCCGTTTT-------TCCAT-TTTGTTTTTCCATAT--CAATCAATACACAAA----C----------------------AATCAA--------CC-----AACC---------------------------------------------------ACTCCCCGACCAAAA--A------------------TCA-------------------------A-AAAC-CGAAACA-A-------AA--A----CGCAAA--ACTGCACACAACACG----AACAC---------------------CAA-----------------------A---------------------------------------AAAAAATCACC---------------CCCTGC------------CCCG--------------CCCAC----------------------------TG-CC----GGT-TGTG--------TTGCCAAAAGTCGGTGCCCACGGTGTACAAGTCGA-GTG--------GTGCA---TACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droKik1
T--------T----------A--------GTTATTATTGATTTA--------TTTCCTGA-TATATT----------TGGTTATTTTATTA----TGCGTTTT-CT---TTACATTTTTGTTTTTCCAT----CAATAAA-------TCAATC----------------------GAT---TCAA----TCAACCCA--------------------------------------------------------ACCCCGACCCC----------TGACG--------TTA-----------------CAACACCAA-AAAA---------------AAAA--ACACACACTGCAAAATGC--ACAACACG----AAAAC---------------------ACA-C--------------------AA---------------------------------------CAATC---------------------TACTGC------------CTC-------TGCCTCTGCCACCTGCCACCTGCTCCTTT-TTTT-------GGTT----TGGTGTGTGTATGTGTGTGGAC-CAAGTCGGTGCCCACGGTTTACAAGTCGA-GTG--------GCGCAACGTACTCATCCAGCAAATASizeHit CountTotal NormTotal
No Reads
droAna3
A--------A----------GCTTAT-TGTTTAGTATTAATCAT------------TTGA-TATTTT----------TGGTTATTTTATTA----TGCGTTTT------TTACAT-TTTATT-TTCCATAT--CAATCAATAAA---TCAATC----------------------AATCAATCAA----TC-----AAC----------------------------------------------------CCACCCCGACCAAAA---------------------TA-----------------------------AAA-ACA----AAAACAAAAAA--ACACT---TGA--AATGCACGCACCACA----CAAAAAAAACAC--------------AAA-A--------------------AA---------------------------------------AAAACAATGAA---------------AAATGA------------ATC-------ACCATCCACCA------------------CC--C-------TG-CC---TGGT-TGTGT-TG----TGGTTGGAAGTCGGTGCCCACGGTGTACAAGTCAA-GTA--------GCGCA---TACTCATCCGCCAAATASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CC---TGGT-TGTGT-TG----TGGTTGGAAGTC............................................................2611.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTCGGTGCCCACGGT................................................1911.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGA------------ATC-------ACCATCCACCA------------------CC--.........................................................................................................2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTCAA-GTA--------GCGCA---TACTCATC.........2411.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-GTA--------GCGCA---TACTCATCCGCCA....2411.001100000
...............................................................................................................................................................................................................................................................................................................................................................................ACA----CAAAAAAAACAC--------------AAA-A--------------------AA---------------------------------------................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................A----CAAAAAAAACAC--------------AAA-A--------------------AA---------------------------------------A...............................................................................................................................................................................................2020.501010000
.........................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAC--------------AAA-A--------------------AA---------------------------------------AAAACA..........................................................................................................................................................................................2130.331010000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAACAC--------------AAA-A--------------------AA---------------------------------------AA..............................................................................................................................................................................................19200.306060000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAACAC--------------AAA-A--------------------AA---------------------------------------AAA.............................................................................................................................................................................................20200.255050000
........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACAC--------------AAA-A--------------------AA---------------------------------------AAA.............................................................................................................................................................................................19200.204040000
...........................................................................................................................................................................................................................................................................................................................................................................................AAAACAC--------------AAA-A--------------------AA---------------------------------------AAAACA..........................................................................................................................................................................................19130.152020000
......................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAACAC--------------AAA-A--------------------AA---------------------------------------A...............................................................................................................................................................................................1970.141010000
.......................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAACAC--------------AAA-A--------------------AA---------------------------------------AAAA............................................................................................................................................................................................21170.122020000
.................................................................................................................................................................................................................................................................................................................................................................................A----CAAAAAAAACAC--------------AAA-A--------------------A........................................................................................................................................................................................................................................18120.081001000
.......................................................................................................................................................................................................................................................................AAA---------------------TA-----------------------------AAA-ACA----AAAACAAAA................................................................................................................................................................................................................................................................................................................................20130.081010000
..............................................................................................................................................................................................................................................................................................................................AAA-ACA----AAAACAAAAAA--AC..........................................................................................................................................................................................................................................................................................................................19200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACAC--------------AAA-A--------------------AA---------------------------------------AA..............................................................................................................................................................................................18200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................AAAAAAACAC--------------AAA-A--------------------AA---------------------------------------AAAA............................................................................................................................................................................................20200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAC--------------AAA-A--------------------AA---------------------------------------AAA.............................................................................................................................................................................................18200.051010000
droBip1
-----------------------TAT-TGTTTAGTATTAATCAT------------TTGA-TATTTT----------CGGTTATTTTATTA----TGCGTTTT------TTACAT-TTTATT-TTCCATAT--CAATCAATTTACAAT----C----------------------AATCAATCAA----TC-----AAC----------------------------------------------------CCACCCCGACCAAAATAA----------------AATCAAAAACAAACCAAAATCACAAAAACAA-AA-------ACA--------AAA--A----CACTAAACAATGCACGCACCAC------ACAA---------------------CCA-C--------------------TA---------AAA--CAA---------------------CGAAACAATA-C---------------CAATGA------------ATC---------------ACCAC----------------------------TG-CC---TGGT-TGTGT-TG----TGGTTGGAAGTCGGTGCCGACGGTGTACAAGTCAA-GTA--------GCGCA---TACTCATCCGCCAAATASizeHit CountTotal NormTotal
No Reads
dp5
C--------GACCCCCCTCTCCTTAT-TGTTTAGTATTAATTTAATGATCTTTTTTTTGC-TATTTT----------TGGTTATTTTATGA----TTCGTTTT-------TTCGT-TTTGTTTTTCCATAT--CAATCAATATAT--C----C----------------------AATCAATC-------C-----AACC---------------------------------------------------ACACCTTGACCAAAACAA------------------AAA-------------------------AAAAAC-ACC----CAAAC----------------CAA--CCCACACAAAAAA-------------------------------A---------------------CAACAA---------------------------------------CACACACCACACACATACACACCCCGTACTGC--------CCGTCCTGCCCGTT------------C-------------------TGCCGCCGCCG---CCCCGGT-TGTG--------TTGTC---AGTCGGTGCCCACGGTGTACCAGTCGA-GTG--------TCCCC---CGTTCATCAAACAAATASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACCAGTCGA-GTG--------TC.......................1911.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGA-GTG--------TCCCC---CGTTCATC.........2111.0010100000000
droPer2
GCCAGGACCGACCCCCCTCTCCTTAT-TGTTTAGTATTAATTTAATGATCTTTTTTTTTC-TATTTT----------TGGTTATTTTATGA----TTCGTTTT-------TTCGT-TTTGTTTTTCCATAT--CAATCAATATAT--C----C----------------------AATCAATC-------C-----AACC---------------------------------------------------ACACCTTGACCAAAA--A------------------AAA-------------------------AAAAAC-ACC----CAAAC----------------CAA--CCCACACAAAAAA-------------------------------A---------------------CAACAA---------------------------------------CACACACCACACACACACACACCCCGTACTGC--------CCGTCCTGCCCGTT------------C-------------------TGCCGCCGCCG---CCCCGGT-TGTG--------TTGTC---AGTCGGTGCCCACGGTGTACCAGTCGA-GTG--------TCCCC---CGTTCATCAAACAAATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGTCGA-GTG--------TCCCC---CGTT.............2011.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTACCAGTCGA-GTG--------TCCCC---C................2311.001000001
........................................................................................................................................................................................................................................................................AA--A------------------AAA-------------------------AAAAAC-ACC----CAAC.....................................................................................................................................................................................................................................................................................................................................19200.051000100
droWil2
A--------A----------ATG-A--TTTTTATTATT---TCT---------------G-TATTA--------------TTA-TTTATTA----TGCGTTTTTCTTTATAACTT-TTTATTTTTCCATAT--CAATCAATCA-AAAA----C----------------------AATCAAACAA-------------TA------------------------------------CCTACCC-AAT--TACCTACCTGAAAAACA--A------------------TCA-------------------------ATCAATTTGA----AAAAC-CAAAAACA----CACAC---AATGT--GCACCAC------CCAC---------------------CCA-CAAATACACACGAAAAA----CC------------GAAACTGAAACCGAAATACCCGAAAACAA----AAACC---------------CAAAAACCGAAAACCCGCCCCA----------T-CA------------------TTACTTTGCGAC---TG-TT----GAC-TATG------TGTTGAT---AGTCGGTACCAACGGTGTATAAGTCCA-AT-----------GTA---TATTCATCCAACAAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAT---AGTCGGTACCAACG..................................................2111.00110000
droVir3
-------------------------T-TGATTAGCGTTGATTGT------------TCTA-TATTTT----------TGTTTATTTTAT--ATTATTTGTTTT-------TACGT-TTTATT-TTCCATAT--CAATCAAA------T----CAATTCAA--------TATACCCAAT----------------------AC--------------------------------AAACGAACC--------AATACCCCG---------AACCCTGCAAACGCACAAACCAAACCAAACCAAAACC--AAAACCAA-AA-------CCA----------------------AC-----------AA--CA----TC-----------CCTCATAAACAA-CAA--------------------------------------------------------------CACAACAACA-------------------CCGC------------CACG--------------------------------TT--TCTC-------CGCC----CGAT-TGTG--------TTGCC---AGTCGGTGCCAATGGTTTACAAA--AA-GTC---------CACA---CATTCATCAAAACAATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
A--------T----------ATCAATATGATTAGCTTTAATTGT------------T-----ATTTATATATTTTGTTGTTTATTTTAT---------------------TACGT-TTTATT-TTCCATATACCAATCAAAACA-ATT----C-----AA--------AATATCCA---------AA-----AT------AC---------A----------------------AAACGAACC-------AAATACCCGAAC----------CCTGCAAATG-----------------------------------------------------------------CAATGC--AATGCA----CCACCCAAAATA--CCAACACCCCATATATACAA-CCA-A--------------------CACAAACACCACCA--CAC---------------------CACCCCAACA-A---------------CAA---------------CACG--------------------------------TTA-TTTC-------CGCC----CGGT-TGTG--------TTGCC---AGTCGGTGCCGATGGTTTACAAATCCACGTC---------GACA---TATTCATCAAACAAATASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
A--------A----------TTG----TATTTAATATT---TAT------------TTAC---TCTT----------TGGTTATTTTTAT-TTTATTTGTCTT------TTACGT-TTTATTTTTTCATAT-----TCAATTCAAACG----C-----AAAACAAAACCCTATGCA---------AA-----AT------ACCCAAAAAAAAAAAAAAAAAACAAACAAT---CAAACGAAC---------GAACCCCGAAA-------TACCCTGCAAATGCA----------------------------------------------------------------AATGCACAATCGA----CCAC--AAAATA--C-----------AC-------ATA-C----------------CAACAA---------------------------------------C---------ACACACACA-------------------------CATG--------------------------------TT--TATA-------CG---CCCCGGT-TGTG--------TTGCC---AGTCGGTGCCAACGATTTACAAATCGA-CCACAACAACAACAAAT--CGTTCATCAAACAAATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:37 PM