ID:

dsi_20065

 Coordinate:

3r:7205218-7205299 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.26

Flybase annnotation

three_prime_UTR [3r_7204937_7205350_-]; exon [3r_7204937_7205424_-]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey-

Sense Strand Reads

######################################################################################################################################################################################
TTAAGTAAACCCCCGCCCTTCCATTTAAAACACATTATATACCTTCTAAAGTAAATATAATACCATATAATATATATGCATACAACAACAACAAAATCAACAACAACAAAAGCAACCACAACAACACGACAGCAACTTCGAGAACAACAACATGGAACCAATGCGGCAACAACAACATCCCG
*******************************************************************.........................................................********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O002
Head
.........................................................................................................................................TCGAGAACAACAACATGGAACCAATG................... 26 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................GAGAACAACAACATGGAACCAATGCGGC............... 28 0 1 3.00 3 1 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................AACACGACAGCAACTTCGAGA....................................... 21 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0
..............................................................................................................................................AACAACAACATGGAACCAATGCGGC............... 25 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0
........................................................................................................................................TTCGAGAACAACAACATGGAACCAATGC.................. 28 0 1 3.00 3 0 0 2 1 0 0 0 0 0 0 0 0
........................................................................................................................................TTCGAGAACAACAACATGGAACCAATG................... 27 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................AACAACAACAAAAGCAACCACAACAA.......................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTCGAGAACAACAACATGGAACCA...................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CAACATGGAACCAATGCGGC............... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGAGAACAACAACATGGAACCAATG................... 25 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................TGGAACCAATGCGGCAACAACAACCTC... 27 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................TAATATATATGCATACAACAACAACA......................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................CAATGCGGCAACAACAACCTC... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AACTTCGAGAACAACAACATGGAACCAA..................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CAACAACAACAAAAGCAACCACAAC............................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GAACAACAACATGGAACCAATGCGG................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GAGAACAACAACATGGAACCAATG................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................AACAACACGACAGCAACTTCGAGAACAA................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGACAGCAACTTCGAGAA...................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................AACCACAACAACACGACAGCAACTTCGAG........................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................ATGCATACAACAACAACAAAATCAA.................................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................TCGAGAACAACAACATGGAACCAATGCA................. 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................AACATGGAACCAATGCGGC............... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCGAGAACAACAACATGGAACCAATGCGGC............... 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................AACACGACAGCAACTTCGAGAA...................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGGAACCAATGCGGCAACA........... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................CACAACAACACGACAGCAACTTCGAGA....................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGACAGCAACTTCGAGAACAACAACATGG........................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTCGAGAACAACAACATGGAAACAA..................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AGCAACTTCGAGAACAACAACATGGAAA........................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................ACGACAGCAACTTCGAGAACAACAAC............................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CGAGAACAACAACATGGAACCAATGCG................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................AACCACAACAACACGACAGCAACTTCAA......................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CACAACAACACGACAGCAACTTCGAGAA...................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................AGCAACTTCGAGAACAACAACATGGAACC....................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................GCAACTTCGAGAACAACAACATGG........................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................CAACAACACGACAGCAACTT............................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................TAAAACACATTATATACCTTCTAAAGTAAA............................................................................................................................... 30 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................ACGACAGCAACTTCGAGAACAACAACA.............................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................AACTTCGAGAACAACAACATGGAA......................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................TATGCATACAACAACAACAAAATCA................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................GGAACCAATGCGGCA.............. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................CACGACAGCAACTTCGAGAAC..................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AGAACAACAACATGGAACCAATGCGGC............... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TATGCATACAACAACAACAAAATCAACAA............................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................ACTTCGAGAACAACAACATGGA.......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGACAGCAACTTCGAGA....................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................AACAAAAGCAACCACAACAACACGACAGC................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GAACAACAACATGGAACCAATGCGGC............... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................CGAGAACAACAACATGGAACCAATGCGGC............... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................AACATGGAACCAATGCGGCAACAAC......... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................AACTTCGAGAACAACAACATGGAACC....................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................TGCATACAACAACAACAAGATCAACA................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................ATCAACAACAACAAAAGCAACCAC............................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCGAGAACAACAACATGGAACCAATGC.................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................TAATATATATGCATACAACAACAACAA........................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AGCAACTTCGAGAACAACAACATGGAA......................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................AACAACATGGAACCAATGCGGCA.............. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................TCGAGAACAACAACATGGAACCA...................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AGCAACTTCGAGAACAACAACATGGAAC........................ 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GAGAACAACAACATGGAA......................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AACATGGAACCAATGCGGCAACAA.......... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACACGACAGCAACTTCGAGAACAAC.................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................CGAGAACAACAACATGGAACCAATGC.................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................ACAAAAGAAACCACAACAACACGACAGC................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTCGAGAACAACAACATGGAACCAA..................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CAACAACAAAATCAACAACA............................................................................. 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................ACAACAAAATCAACAACAAC........................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................AAGTAAATCTAATAACATA................................................................................................................... 19 2 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

AATTCATTTGGGGGCGGGAAGGTAAATTTTGTGTAATATATGGAAGATTTCATTTATATTATGGTATATTATATATACGTATGTTGTTGTTGTTTTAGTTGTTGTTGTTTTCGTTGGTGTTGTTGTGCTGTCGTTGAAGCTCTTGTTGTTGTACCTTGGTTACGCCGTTGTTGTTGTAGGGC
**********************************************************.........................................................******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M053
female body
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................TTTAGTTGTTGTGGCTTTCGT.................................................................... 21 2 2 1.00 2 2 0 0 0 0 0 0 0
..........................................................................................TGCTTTAGTTGTTGTGGCTTTCGT.................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................................CTTGTTGTTGGACCTTGATT..................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................GCTTTAGTTGTTGTGGCTTTCGT.................................................................... 23 3 3 0.67 2 2 0 0 0 0 0 0 0
........................................................................................GTTGTTTTAGTTGTTGTTGT.......................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0 0
...TCTTTTGGGTGCGGGAAGGC............................................................................................................................................................... 20 3 3 0.33 1 0 0 0 1 0 0 0 0
..............................................................................................TTAGTTGTTGTAGGTTTCGTT................................................................... 21 2 3 0.33 1 0 0 1 0 0 0 0 0
............................................................................................................................................CCTTGTTGTTGGACCTTGATT..................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0
..............CGGGAAGGTAAGTCTTG....................................................................................................................................................... 17 2 8 0.25 2 0 0 2 0 0 0 0 0
......................................................................................ATGTTGTTTTAGTTGTTGTT............................................................................ 20 1 5 0.20 1 0 0 0 1 0 0 0 0
...........................................................................................................................................CTCTGGTTGTTTTATCTTGG....................... 20 3 15 0.07 1 0 0 0 0 0 1 0 0
.................................................................................................................................................ATGTGGTACCTTGGTTA.................... 17 2 15 0.07 1 0 0 1 0 0 0 0 0
.........................................GGAGGATTTCATTTA.............................................................................................................................. 15 1 17 0.06 1 0 0 0 0 0 0 1 0
.................................................................................................GTTGTTGTTGTTTTCGT.................................................................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0
..............CGGGAAGGTAAGTCTT........................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 1
................................................................................ATGTTGTTGTTGTTTT...................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................CGTTTGTGTTGTTGTGTTG.................................................... 19 2 20 0.05 1 0 0 1 0 0 0 0 0
........................................................................................................TTGTTTTGGTTGGTGTTATT.......................................................... 20 2 20 0.05 1 0 0 0 0 1 0 0 0
......................................................................................TTGTTGTTTTAGTGGT................................................................................ 16 1 20 0.05 1 0 0 1 0 0 0 0 0
..............CGGGAAGGGAAAGTTTGTT..................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................GTTGTTGTTGTTTTA..................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:7205168-7205349 - dsi_20065 TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AATCAACAACAACAAAAGCAACCACAACAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-AA----------CAACAACATCC-------------------------------------------------------------------------------------CG-------------------
droSec2 scaffold_12:76294-76475 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AATCAACAACAACAAAAGCAACCACAACAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-AA----------CAACAACTTCC-------------------------------------------------------------------------------------CG-------------------
dm3 chr3R:14074012-14074172 + TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-CAA-AATCAA------------------CAACAACA----------------------------------------CG------ACAACA-ACTTCAAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-AA----------CAACAAC--------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4770:7561050-7561209 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAAACAAAAA------------------------ACAAC-------------------------------------------------ACAGCA-ACTTCGAG------------A---A---------C---AACAACATGGAACCAAC--ACGGC-AA----------TAACAACATCT-------------------------------------------------------------------------------------CA-------------------
droYak3 3R:2683623-2683773 + TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAAGAA------------------------------------A----------------------------------------CA------ACAGCA-ACATCAAG------------A---A---------C---AACAACATGGAACCAAC--ACGGC-AG----------GAACAACATCC-------------------------------------------------------------------------------------CA-------------------
droEug1 scf7180000409246:425752-425915 + TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AA------------------------ACAACA----------------------------------------CG------ACAGCAAACATCAAT------AA---CA---A---------G---AACAACTCGGAACCAAA--ACGGC-AA----------CAACAGCATCA--------------------------------------------------------------------------------GC---AA-------------------
droBia1 scf7180000299102:1892802-1892950 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AA------------------------ACAACA----------------------------------------CG------ACAGCA-ACATC---------------------------------AACAACATGGAACCAACACACGGC-AA----------CCACAACC-------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415878:782750-782915 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AAA---------------------CAACAACA----------------------------------------CG------ACAGCA-ACATCAAC------CG---CA---A---------C---AACAACACGGAACCAAA--ACGGC-AA----------CAACAACATCC--------------------------------------------------------------------------------GC---AA-------------------
droEle1 scf7180000491008:2183410-2183559 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATAACATATAATATATATGCATA-CAACA---------ACAACAA-----G---------------------------AACA----------------------------------------CG------ACAGCA-ACATCAAC------------A---G---------C---AACAACACGGAACCAAC--ACGGC-AA----------CAGCAACA-------------------------------------------------------------------------------------------------------------
droRho1 scf7180000773440:41871-42017 + TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----G---------------------------AACA----------------------------------------CG------ACAGCA-ACATC---------------A---A---------C---CACAACGCGGAAGCAAC--ACGGC-AG----------CAACAACA-------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453800:551598-551742 + TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----G---------------------------AACA----------------------------------------CG------ACAGCA-ACATC---------------------------------AACAGCAAGGAACCAAC--ACGGC-AA----------CAACAACAT------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302690:374002-374148 + TTAAGTAACCCCCCGCCCTTCCATTGAAAAA-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACA--------------------------------------ACA----------------------------------------CG------ACAGCA-AA-ACAAC------AG---CA---A---------C---AAAAAACTGGAACCAAC--ACGGC-AT----------CAT---CATCC----------------------------------------------------------------------------------------------------------
droAna3 scaffold_12911:2188514-2188679 - TTAAGTAAACCCCCGCCCTTCCATTTAAAAA-------------------------------------------------------CACA--------------TTATATACCTTCTAAAAGTAAATATAATACCATATAATATATATGCATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACCGAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GTAATCAACGAACGACAAAAACAAGG
droBip1 scf7180000396714:885834-885997 + TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAAAAGTAAATATAATACCATATAATATATATGCATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACAACA-G------------------CA---G---------C---AACAACACCGAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GTAATCAACGAACGACAA-AACAAGG
dp5 2:19382281-19382479 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TAATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CATCA---------A--ACC--------------------------------ACAACA----------------------------------------CG------ACAACA--------GAACAACAA---CA---A---------C---AACCAGAACGAACCACA--------------------------------------------AAAGAGGTACCAGAAACAGCACTACAAAAGATCAGCGGCCGATCCTTTG----------GAGCATCGATAATCG-------------------
droPer2 scaffold_3:2129733-2129931 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TAATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CATCA---------A--ACCA-----------------------------CAACAACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------AACCAGAACGAACCACAAAAGAGGTACCAGAAACAGCACTACAAAAGATCAGCAGCCGATCCTTTG----------GAGCATCGATAATCG-------------------
droWil2 scf2_1100000004921:3686308-3686548 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-C-A--ACA-AACACAAAAATAATAA----CAAGAGAAAACGAAAAAAAAAAACAA-CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATGTATGCATTACAAACACGACAACAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGCATGGCGGAAACTG---------ACCAACAATCAAAAACAACA------------------------------------------------------------CTTAGCACAAAACCAGGACACCGACACCGA-------------------
droVir3 scaffold_13047:19189836-19190072 - TTAAGTAAACCCCCGCCCTTCCATTTAAA-ACAAAACAAAACAAAA--AAAAAAACAAACAAAACAAAACAAAA-----AAACAAACACAAAACAAAAACAAAAACATATACCTTCTAA-AGTAAATATAATA-CATATAATATATATGCATA-CAACA---------ATAAAA--------------------------------ACAACA--CGCAACCG-GGTAGTA-----AACAACAAGTAAAAA----AAAACAACAGCA-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAGAA--T---------------------------------------------------------------------------------------CAACA----------------
droMoj3 scaffold_6540:17383171-17383345 + TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACAAAACAA-AACAAAAACATATACCTTCTAA-AGTAAATATAATA-CATATAATATATATGCATG-CAACA---------ATAAA-A-----G---------------------------AACACGCGCAACCG-GGTAGTA------------------------------------AACAAGAAT------AACAACAAAAACAGCATCATCAGCAACAA--------------------A----------------ACAT---------------------------------------------------------------------------------------CAACA----------------
droGri2 scaffold_14906:3599413-3599638 - TTAAGTAAACCCCCGCCCTTCCATTTAAACA-CACACAAAACAAAAAAAAAACAA----CAAAAAAAAACAAAAAA-------------A--------------ACATATACCTTCTAA-AGTAAATATAATA-CATATAATATATATGCATA-TAACA---------ATAAAAA-----C------------------------AACAACA--CGCAGCCGGGGTAGTATCAACATCAACAACTTGAAACGCGACAACAACAGCA-ACAA---------------CA---A---------C---AAGAAGA---------T--CGGGCGAA----------CAACAACATCT----------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AATCAACAACAACAAAAGCAACCACAACAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-AA----------CAACAACATCC-------------------------------------------------------------------------------------CG-------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................TCGAG------------A---A---------C---AACAACATGGAACCAAT--G......................................................................................................................................2614.00400000001000030000
................................................................................................................................................................................................................................................................................GAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2813.00300010000100010000
................................................................................................................................................................................................................AACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---........................................................................................................................................................................2113.00300000012000000000
...............................................................................................................................................................................................................................................................................................A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2513.00300000000003000000
.............................................................................................................................................................................................................................................................................TTCGAG------------A---A---------C---AACAACATGGAACCAAT--GC.....................................................................................................................................2813.00300000021000000000
.............................................................................................................................................................................................................................................................................TTCGAG------------A---A---------C---AACAACATGGAACCAAT--G......................................................................................................................................2712.00200000002000000000
........................................................................................................................................................................................AACAACAACAAAAGCAACCACAACAA.........................................................................................................................................................................................................................................................2612.00200000000000020000
.............................................................................................................................................................................................................................................................................TTCGAG------------A---A---------C---AACAACATGGAACCA...........................................................................................................................................2412.00200000000000020000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGGC-.................................................................................................................................2012.00200020000000000000
...............................................................................................................................................................................................................................................................................CGAG------------A---A---------C---AACAACATGGAACCAAT--G......................................................................................................................................2512.00200100010000000000
..........................................................................................................................................TAATATATATGCATA-CAACA---------ACAACA.............................................................................................................................................................................................................................................................................................2611.00100000000000001000
.........................................................................................................................................................................................................................................................................A-ACTTCGAG------------A---A---------C---AACAACATGGAACCAA..........................................................................................................................................2811.00100000000000010000
.......................................................................................................................................................................................CAACAACAACAAAAGCAACCACAAC...........................................................................................................................................................................................................................................................2511.00100010000000000000
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACCAAT--GCGG...................................................................................................................................2511.00100010000000000000
................................................................................................................................................................................................................................................................................GAG------------A---A---------C---AACAACATGGAACCAAT--G......................................................................................................................................2411.00100000001000000000
.............................................................................................................................................................................................................AACAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AA........................................................................................................................................................2811.00100000000000010000
............................................................................................................................................................................................................................................................CG------ACAGCA-ACTTCGAG------------A---A---------..............................................................................................................................................................1811.00100000010000000000
.......................................................................................................................................................................................................AACCACAACAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------............................................................................................................................................................................2911.00100010000000000000
..................................................................................................................................................ATGCATA-CAACA---------ACAACAA-----AATCAA.................................................................................................................................................................................................................................................................................2511.00100000000000001000
..............................................................................................................................................................................................................................................................................TCGAG------------A---A---------C---AACAACATGGAACCAAT--GCA....................................................................................................................................2811.00100000000000001000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-.................................................................................................................................1911.00100010000000000000
..............................................................................................................................................................................................................................................................................TCGAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................3011.00100000001000000000
................................................................................................................................................................................................................AACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------..............................................................................................................................................................2211.00100000010000000000
........................................................................................................................................................................................................................................................................................................................TGGAACCAAT--GCGGC-AA----------CA...................................................................................................................1911.00100000000001000000
..........................................................................................................................................................................................................CACAACAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---........................................................................................................................................................................2711.00100000010000000000
............................................................................................................................................................................................................................................................CG------ACAGCA-ACTTCGAG------------A---A---------C---AACAACATGG................................................................................................................................................2911.00100000010000000000
......................................................................................................................................................................................................................................................................AGCA-ACTTCGAG------------A---A---------C---AACAACATGGAAA.............................................................................................................................................2811.00100000000000010000
...................................................................................................................................................................................................................A----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AACAAC....................................................................................................................................................2611.00100000000000010000
...............................................................................................................................................................................................................................................................................CGAG------------A---A---------C---AACAACATGGAACCAAT--GCG....................................................................................................................................2711.00100000000000010000
..........................................................................................................................................................................................................CACAACAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------..............................................................................................................................................................2811.00100000000000001000
......................................................................................................................................................................................................................................................................AGCA-ACTTCGAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2911.00100000010000000000
.......................................................................................................................................................................................................................................................................GCA-ACTTCGAG------------A---A---------C---AACAACATGG................................................................................................................................................2411.00100000000000001000
............................................................................................................................................................................................................CAACAACA----------------------------------------CG------ACAGCA-ACTT............................................................................................................................................................................................2011.00100010000000000000
.........................TAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAA.............................................................................................................................................................................................................................................................................................................................................3011.00100000000000001000
...................................................................................................................................................................................................................A----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AACAACA...................................................................................................................................................2711.00100000000001000000
.........................................................................................................................................................................................................................................................................A-ACTTCGAG------------A---A---------C---AACAACATGGAA..............................................................................................................................................2411.00100010000000000000
.................................................................................................................................................TATGCATA-CAACA---------ACAACAA-----AATCA..................................................................................................................................................................................................................................................................................2511.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................GGAACCAAT--GCGGC-A................................................................................................................................1511.00100000001000000000
..................................................................................................................................................................................................................CA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---..........................................................................................................................................................2111.00100010000000000000
.................................................................................................................................................................................................................................................................................AG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2711.00100000000001000000
.................................................................................................................................................TATGCATA-CAACA---------ACAACAA-----AATCAACAA..............................................................................................................................................................................................................................................................................2911.00100000000000001000
...........................................................................................................................................................................................................................................................................ACTTCGAG------------A---A---------C---AACAACATGGA...............................................................................................................................................2211.00100010000000000000
............................................................................................................................................................................................................................................................CG------ACAGCA-ACTTCGAG------------A---........................................................................................................................................................................1711.00100000010000000000
..............................................................................................................................................................................................AACAAAAGCAACCACAACAACA----------------------------------------CG------ACAGC..................................................................................................................................................................................................2911.00100010000000000000
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2611.00100000000000100000
...............................................................................................................................................................................................................................................................................CGAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2911.00100000000010000000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-AA----------CAAC.................................................................................................................2511.00100000000001000000
.........................................................................................................................................................................................................................................................................A-ACTTCGAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2611.00101000000000000000
.....................................................................................................................................................................................ATCAACAACAACAAAAGCAACCAC..............................................................................................................................................................................................................................................................2411.00100010000000000000
..............................................................................................................................................................................................................................................................................TCGAG------------A---A---------C---AACAACATGGAACCAAT--GC.....................................................................................................................................2711.00100000001000000000
..........................................................................................................................................TAATATATATGCATA-CAACA---------ACAACAA-----.......................................................................................................................................................................................................................................................................................2711.00100000000000010000
......................................................................................................................................................................................................................................................................AGCA-ACTTCGAG------------A---A---------C---AACAACATGGAA..............................................................................................................................................2711.00100000000000010000
.................................................................................................................................................................................................................................................................................................................AACAACATGGAACCAAT--GCGGC-A................................................................................................................................2311.00100000000001000000
..............................................................................................................................................................................................................................................................................TCGAG------------A---A---------C---AACAACATGGAACCA...........................................................................................................................................2311.00100000000000010000
......................................................................................................................................................................................................................................................................AGCA-ACTTCGAG------------A---A---------C---AACAACATGGAAC.............................................................................................................................................2811.00100000010000000000
................................................................................................................................................................................................................................................................................GAG------------A---A---------C---AACAACATGGAA..............................................................................................................................................1811.00100010000000000000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-AA----------CAA..................................................................................................................2411.00100010000000000000
.................................................................................................................................................................................................................ACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AAC.......................................................................................................................................................2511.00100000001000000000
...............................................................................................................................................................................................................................................................................CGAG------------A---A---------C---AACAACATGGAACCAAT--GC.....................................................................................................................................2611.00100000000001000000
.............................................................................................................................................................................................................................................................................TTCGAG------------A---A---------C---AACAACATGGAACCAA..........................................................................................................................................2511.00100000000000010000
.............................................................................................................................................................CA---------ACAACAA-----AATCAACAACA............................................................................................................................................................................................................................................................................2020.50100000100000000000
........................................................................................................................................................................ACAACAA-----AATCAACAACAAC..........................................................................................................................................................................................................................................................................2020.50100010000000000000
droSec2
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AATCAACAACAACAAAAGCAACCACAACAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-AA----------CAACAACTTCC-------------------------------------------------------------------------------------CG-------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGGC-.................................................................................................................................20127.002735190
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2615.0051220
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-.................................................................................................................................1914.0042020
.................................................................................................................................................................................................................................................................................................................AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2214.0041030
..................................................................................................................................................................................................................................................................................................................ACAACATGGAACCAAT--GCGGC-.................................................................................................................................2113.0030120
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGGC-AA----------CAACA................................................................................................................2712.0020020
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGGC-AA----------CAAC.................................................................................................................2612.0020110
...............................................................................................................................................................................................................................................................................................A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2511.0011000
..............................................................................................................................................................................................AACAAAAGCAACCACAACAACA----------------------------------------CG------.......................................................................................................................................................................................................2411.0011000
............................................................................................................................................................................................................................................................CG------ACAGCA-ACTTCGAG------------A---A---------C---..........................................................................................................................................................1911.0010010
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-AA----------C....................................................................................................................2211.0010001
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGGC-AA----------C....................................................................................................................2311.0010010
................................................................................................................................................................................................................................................................................................................................AT--GCGGC-AA----------CAACAACTTCC-------------------------------------------------------------------------------------C....................2111.0011000
............................................................................................................................................................................................................................................................CG------ACAGCA-ACTTCGAG------------A---G---------..............................................................................................................................................................1811.0010001
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-.................................................................................................................................1811.0010010
.................................................................................................................................................................................................................ACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---..........................................................................................................................................................2211.0011000
..............................................................................................................................................ATATATGCATA-CAACA---------ACAA...............................................................................................................................................................................................................................................................................................2011.0011000
.............................................................................................................................................................................................................................................................G------ACAGCA-ACTTCGAG------------A---A---------C---..........................................................................................................................................................1811.0010010
.......................................................................................................................................................................................................................................................................................................................ATGGAACCAAT--GCGGC-AA----------CAACAACTT............................................................................................................2711.0011000
...............................................................................................................................................................................................................................................................................................................................AAT--GCGGC-AA----------CAACAACTTCC-------------------------------------------------------------------------------------CG-------------------2311.0010010
.............................................................................................................................................................................................................................................................................................................C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2311.0010010
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-AA----------.....................................................................................................................2011.0010010
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACC............................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................AG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2711.0010010
.......................................................................................................................................................................................CAACAACAACAAAAGCAACCACAACAA.........................................................................................................................................................................................................................................................2711.0010010
......................................................................................................................................................ATA-CAACA---------ACAACAA-----AATCAAC................................................................................................................................................................................................................................................................................2211.0011000
...........................AA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGT................................................................................................................................................................................................................................................................................................................................................2511.0010010
............................................................................................................ATACCTTCTAA-AGTAAATATAATACCAT..................................................................................................................................................................................................................................................................................................................................2811.0011000
......................ATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTT........................................................................................................................................................................................................................................................................................................................................................2311.0011000
..............................................................................................................................................................................................AACAAAAGCAACCACAACAACA----------------------------------------...............................................................................................................................................................................................................2211.0011000
...............................................................................................................................................................................................................CAACA----------------------------------------CG------ACAGCA-ACTTCGA.........................................................................................................................................................................................2011.0011000
...........................................................................................................................................................................................AACAACAAAAGCAACCACAACAACA----------------------------------------CG------AC.....................................................................................................................................................................................................2911.0011000
..........................................................................................................................................................................................................................................................................................................................GAACCAAT--GCGGC-AA----------CAACA................................................................................................................2011.0010010
.................................................................................................................................................................................................................................................................................................................AACAACATGGAACCAAT--GCGGG-.................................................................................................................................2211.0010010
....................................................................................................................................................................................AATCAACAACAACAAAAGCAACCACA.............................................................................................................................................................................................................................................................2611.0010010
........................................................................................................................................................................................................................................................................CA-ACTTCGAG------------A---A---------C---AACAACATGG................................................................................................................................................2311.0011000
...........................................................................................................................................AATATATATGCATA-CAACA---------ACAACAA-----A......................................................................................................................................................................................................................................................................................2711.0011000
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-AA----------CAACA................................................................................................................2511.0011000
...............................................................................................................................................................................................................CAACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---........................................................................................................................................................................2211.0010100
..................................................................................................................................................................................................................CA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---..........................................................................................................................................................2111.0010010
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGG...................................................................................................................................1911.0010010
..............................................................................................................................................................................................................................................................................TCGAG------------A---A---------C---AACAACATGG................................................................................................................................................1811.0010010
...................................................................................................................CTAA-AGTAAATATAATACCAT..................................................................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-AA----------CAA..................................................................................................................2411.0010100
............................................................................................................................................................................................................................................................CG------ACAGCA-ACTTCGAG------------A---A---------..............................................................................................................................................................1811.0010010
...................................................................................................................................................................................................................................................................................................A---------C---AACAACATGGAACCAAT--GCGGC-.................................................................................................................................2411.0011000
.............................................................................................................................................................................................................................................................G------ACAGCA-ACTTCGAG------------A---A---------C---AA........................................................................................................................................................2011.0010010
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-AA----------CAAC.................................................................................................................2411.0010010
................................................................................................................................................................................................................AACA----------------------------------------CG------ACAGCA-ACTTCGAG------------A---A---------C---AA........................................................................................................................................................2511.0010010
.............................................................................................................................................................................AA-----AATCAACAACAACAAAAG.....................................................................................................................................................................................................................................................................2050.2010010
dm3
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-CAA-AATCAA------------------CAACAACA----------------------------------------CG------ACAACA-ACTTCAAG------------A---A---------C---AACAACATGGAACCAAT--GCGGC-AA----------CAACAAC--------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-AA----------CA...................................................................................................................22159.0059000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100039120000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000100000000000000000000000000000000000000000010000010000000000000000000001000
............................................................................................................................................................................................................................................................CG------ACAACA-ACTTCAAG------------A---A---------C---AA........................................................................................................................................................21152.0052000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022246000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-AA----------C....................................................................................................................22149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000007151905000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................ACA----------------------------------------CG------ACAACA-ACTTCAAG------------A---A---------C---A.........................................................................................................................................................23145.0045000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110025117000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-AA----------CAACA................................................................................................................25140.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002386000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000
..................................................................................................................................................................................................................................................................................................................ACAACATGGAACCAAT--GCGGC-A................................................................................................................................22135.003500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000041001890000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGGC-A................................................................................................................................21134.0034000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000030012113000000000000000000000000000000000000000000000000000000000000020000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-.................................................................................................................................18133.0033000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000131700000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CATGGAACCAAT--GCGGC-AA----------CA...................................................................................................................21131.0031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100014160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ATGGAACCAAT--GCGGC-AA----------CAAC.................................................................................................................22128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000047903000003000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACAACATGGAACCAAT--GCGGC-AA----------CA...................................................................................................................25128.002800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001591000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010
............................................................................................................................................................................................................................................................CG------ACAACA-ACTTCAAG------------A---A---------C---A.........................................................................................................................................................20128.002800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000085002310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-AA----------CAAC.................................................................................................................25127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000001101100000000000000000000000001010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-A................................................................................................................................19126.002600000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010600012100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000010000000
........................................................................................................................................................................................................................................................................................................................TGGAACCAAT--GCGGC-AA----------CAACA................................................................................................................22123.002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007114000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CG------ACAACA-ACTTCAAG------------A---A---------C---AACA......................................................................................................................................................23121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000856000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGGC-.................................................................................................................................20118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000007500010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACAACATGGAACCAAT--GCGGC-.................................................................................................................................21118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000003030330000000020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000
..................................................................................................................................................................................................................CA----------------------------------------CG------ACAACA-ACTTCAAG------------A---A---------C---A.........................................................................................................................................................22118.001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGGC-AA----------CA...................................................................................................................24118.001800000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
......................................................................................................................................................................................................................................................................................................................CATGGAACCAAT--GCGGC-AA----------CAACA................................................................................................................24117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................TCAA------------------CAACAACA----------------------------------------CG------ACAACA-ACTTCAA.........................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................AA-CAA-AATCAA------------------CAACAACA----------------------------------------CG------ACAACA-AC..............................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................................................................................................................................................................................................................CG------ACAACA-ACTTCAAG------------A---A---------C---AACCC.....................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TA-CAACA---------ACAACAA-CAA-AATCAA------------------CAACA..........................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................CAA-AATCAA------------------CAACAACA----------------------------------------CG------.......................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................A--------------TTATATACCTTCTAA-AGTAAA.............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TATATGCATA-CAACA---------ACAACAA-CAA-AA.....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CAAG------------A---A---------C---AACAACATGGAACCAAT--GCG....................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAT--GCGGC-AA----------CG...................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................CAACAA-CAA-AATCAA------------------CAACAACA----------------------------------------CG------ACA....................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................A-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAA.............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................A-CAA-AATCAA------------------CAACAACA----------------------------------------...............................................................................................................................................................................................................1841.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................ACA---------ACAACAA-CAA-AATCAA------------------CAACAACA----------------------------------------CG------.......................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TGCATA-CAACA---------ACAACAA-CAA-AATC...................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................TCAAG------------A---A---------C---AACAACATGGAACCAAT--GCGG...................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACCAAT--.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCG....................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............CCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCT.........................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACAACATGGAACCAAT--GCAA...................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TCTAA-AGTAAATATAATACCATATAATA............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAT--GCGG...................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAT--GCGGC-AA----------CAAA.................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CA----------------------------------------CG------ACAACA-ACTTCAAG------------A---A---------C---AACAA.....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAAACAAAAA------------------------ACAAC-------------------------------------------------ACAGCA-ACTTCGAG------------A---A---------C---AACAACATGGAACCAAC--ACGGC-AA----------TAACAACATCT-------------------------------------------------------------------------------------CA-------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................A---------C---AACAACATGGAACCAAC--ACGGC-A................................................................................................................................2513.0031000200
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACCAAC--ACGGC-.................................................................................................................................2613.0031101000
.................................................................................................................................................................................................................................................................................................................AACAACATGGAACCAAC--ACGGC-.................................................................................................................................2212.0020000020
...............................................................................................................................................................................................................................................................................................A---A---------C---AACAACATGGAACCAAC--ACGGC-A................................................................................................................................2612.0020000110
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAC--ACGGC-A................................................................................................................................2012.0020000200
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACCAAC--A......................................................................................................................................2211.0011000000
.............................................................................................................................................................CA---------ACAACAAACAAAAA------------------------ACAAC-------------------------------------------------ACAGC..................................................................................................................................................................................................2611.0011000000
........................................................................................CA--------------TTATATACCTTCTAA-AGTAAATAT..........................................................................................................................................................................................................................................................................................................................................2611.0011000000
...................................................................................................................................................................................AAA------------------------ACAAC-------------------------------------------------ACAGCA-ACTTCGAG------------A---A---------..............................................................................................................................................................2411.0011000000
.........................................................................................................................................................................................................................................................................A-ACTTCGAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2611.0010100000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAC--ACGGC-A................................................................................................................................2111.0010000100
.....................................................................................................................................................CATA-CAACA---------ACAACAAACAAAAA------------------------AC...........................................................................................................................................................................................................................................................2511.0010100000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAC--ACGGC-.................................................................................................................................1911.0010100000
........................................................................................................................................................................................................................................................................................................................TGGAACCAAC--ACGGC-AA----------TAACAACATC...........................................................................................................2711.0011000000
.............................................................................................................................................................................................................................................................................................................C---AACAACATGGAACCAAC--ACGGC-AA----------.....................................................................................................................2511.0011000000
...............................................................................................................................................TATATGCATA-CAACA---------ACAACAAACAA........................................................................................................................................................................................................................................................................................2611.0011000000
...................................................................................................................................................................................................................................................................................................A---------C---AACAACATGGAACCAAC--ACGGC-.................................................................................................................................2411.0010100000
...........................................................................................................................................................................................................................................................................ACTTCGAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2511.0010100000
.......................................................................................................................................................................................................................................................................GCA-ACTTCGAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2811.0011000000
.........................................................................................................................................................................................................................................................................A-ACTTCGAG------------A---A---------C---AACAACATG.................................................................................................................................................2111.0010000010
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAC--ACGGC-AA----------T....................................................................................................................2311.0010000010
.............................................................................................................TACCTTCTAA-AGTAAATATA.........................................................................................................................................................................................................................................................................................................................................2011.0011000000
.........................................................................................................................................................................................................................................................................................................................GGAACCAAC--ACGGC-AA----------TAAC.................................................................................................................2011.0010100000
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACC............................................................................................................................................1811.0010100000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAC--ACGGC-.................................................................................................................................2011.0010000100
.....................................................................................................................................................................................A------------------------ACAAC-------------------------------------------------ACAGCA-ACTTCGAG------------A---A---------C---..........................................................................................................................................................2311.0010001000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAC--ACGGC-AA----------TAACA................................................................................................................2611.0011000000
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACCAAC--ACGGC-A................................................................................................................................2711.0010000010
.....................................................................................................................................................................................A------------------------ACAAC-------------------------------------------------ACAGCA-ACTTCGA.........................................................................................................................................................................................1911.0010000100
..................................................................................................................................................................................................................C-------------------------------------------------ACAGCA-ACTTCGAG------------A---A---------C---AACAACA...................................................................................................................................................2511.0011000000
....................................................................................................................................................................................AA------------------------ACAAC-------------------------------------------------ACAGCA-ACTTCGA.........................................................................................................................................................................................2011.0010100000
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AACAACATGGAACCAAC--ACGGC-AA----------C....................................................................................................................2911.0010100000
.....................................................................................................................................................................................A------------------------ACAAC-------------------------------------------------ACAGCA-ACTTCGAG------------A---A---------C---AACAAC....................................................................................................................................................2911.0011000000
.................................................................................................................................................................................AAAAA------------------------ACAAC-------------------------------------------------ACAGCA-ACTTC...........................................................................................................................................................................................2111.0010000010
......................................................................................................................................................ATA-CAACA---------ACAACAAACAAAAA------------------------ACAAC-------------------------------------------------.......................................................................................................................................................................................................2711.0010100000
............................................................................................................................................................................CAAACAAAAA------------------------ACAAC-------------------------------------------------ACAGC..................................................................................................................................................................................................2011.0010100000
................................................................................................................................................................................................................................................................................GAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2011.0011000000
.....................................................................................................................................................................................................................................................................................................................ACATGGAACCAAC--ACGGC-.................................................................................................................................1811.0010000010
droYak3
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAAGAA------------------------------------A----------------------------------------CA------ACAGCA-ACATCAAG------------A---A---------C---AACAACATGGAACCAAC--ACGGC-AG----------GAACAACATCC-------------------------------------------------------------------------------------CA-------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAC--ACGGC-AG----------G....................................................................................................................2213.00301100010000
.........................................................................................................................................ATAATATATATGCATA-CAACA---------ACAAG..............................................................................................................................................................................................................................................................................................2612.00202000000000
.............................................................................................................................................................................................................................................................................ATCAAG------------A---A---------C---AACAACATGGAAC.............................................................................................................................................2211.00101000000000
.............................................................................................................................................................................................................................................................................................................C---AACAACATGGAACCAAC--ACGGC-.................................................................................................................................2311.00100000010000
................................................................................................................................................................................................................................................................................AAG------------A---A---------C---AACAACATGGAACCAAC--AC.....................................................................................................................................2511.00100000010000
.............................................................................................................................................................................................................................................................A------ACAGCA-ACATCAAG------------A---A---------C---AACAACAT..................................................................................................................................................2611.00101000000000
..........................................................................................................ATATACCTTCTAA-AGTAAATATA.........................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................................................................................CAAGAA------------------------------------A----------------------------------------CA------ACAGCA-ACATCAAG------------A---A---------C---..........................................................................................................................................................2611.00100100000000
...........................................................................................................................................................................................................................................................................................................................AACCAAC--ACGGC-AG----------GAACAACATCC-------------------------------------------------------------------------------------CA-------------------2711.00101000000000
.....TAAACCCCCGCCCTTCCATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAC--ACGGC-A................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................CA-ACATCAAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2711.00101000000000
...................................................................................................................................................................................................................................................................................................A---------C---AACAACATGGAACCAAC--ACGGC-AG----------GA...................................................................................................................2811.00100100000000
......................................................................................................................................................................................................................................................................................................................CATGGAACCAAC--ACGGC-AG----------GA...................................................................................................................2111.00101000000000
...............................................................................................................................................................................................................................................................................CAAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2111.00100100000000
............................................................................................................................................................................................................................................................................................................................ACCAAC--ACGGC-AG----------GAACAACATCC-------------------------------------------------------------------------------------.....................2411.00101000000000
..................................................................................................................................................ATGCATA-CAACA---------ACAAGAA------------------------------------A----------------------------------------CA------ACA....................................................................................................................................................................................................2511.00101000000000
......AAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
........................................................................................................................................................................ACAAGAA------------------------------------A----------------------------------------CA------ACAGCA-ACATC...........................................................................................................................................................................................2111.00100100000000
......................................................................................................................................................................................................................................................................................................................CATGGAACCAAC--ACGGC-AG----------GAAC.................................................................................................................2311.00101000000000
....................................................................................................................................................................................................................................................................................................................AACATGGAACCAAC--ACGGC-AG----------.....................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................CAACATGGAACCAAC--ACGGC-AG----------GAA..................................................................................................................2511.00101000000000
..............................A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGT................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
........................................................................................CA--------------TTATATACCTTCTAA-AGT................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................C---AACAACATGGAACCAAC--AC.....................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................................................A---------C---AACAACATGGAACCAAC--ACGGC-AG----------.....................................................................................................................2611.00101000000000
...........................................................................................................................................................................................................................................................................ACATCAAG------------A---A---------C---AACAACATGGAACC............................................................................................................................................2511.00101000000000
..............................................................................................................................................ATATATGCATA-CAACA---------ACAAGAA------------------------------------........................................................................................................................................................................................................................................................2311.00100010000000
......................................................................................................................................................ATA-CAACA---------ACAAGAA------------------------------------A----------------------------------------CA------ACAGCA-AC..............................................................................................................................................................................................2611.00101000000000
..............................................................................................................ACCTTCTAA-AGTAAATATA.........................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................TCAAG------------A---A---------C---AACAACATGGAACCAAC--A......................................................................................................................................2611.00101000000000
.................................................................................................................TTCTAA-AGTAAATATAATACCATAT................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.......................................................................................................................................................................................................................................................................................................................ATGGAACCAAC--ACGGC-AG----------G....................................................................................................................1911.00101000000000
.............................................................................................................................................................................AA------------------------------------A----------------------------------------CA------ACAGCA-ACATCAAG------------A---A---------..............................................................................................................................................................2111.00100010000000
......................................................................................................................................................................................................................................................................AGCA-ACATCAAG------------A---A---------C---AACAA.....................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................C---AACAACATGGAACCAAC--ACGGC-AG----------G....................................................................................................................2611.00101000000000
...................................................................................................................................................TGCATA-CAACA---------ACAAGAA------------------------------------A----------------------------------------CA------ACAGCA-A...............................................................................................................................................................................................2811.00101000000000
............................................................................................................................................................................................................................................................................CATCAAG------------A---A---------C---AACAACATGGAACCAAC--A......................................................................................................................................2811.00101000000000
..........................................................................................................................................................................................................................................................................................................................GAACCAAC--ACGGC-AG----------GAACAACATCC-------------------------------------------------------------------------------------C....................2711.00100100000000
...................................................................................................................................................................................................................................................................................................A---------C---AACAACATGGAACCAAC--ACGGC-A................................................................................................................................2511.00100000010000
.............................................................................................................................................................................................................................................................................ATCAAG------------A---A---------C---AACAACATGGA...............................................................................................................................................2011.00101000000000
...............................................................................................................................................................................................................................................................................CAAG------------A---A---------C---AACAACATGGAACCAAC--ACGG...................................................................................................................................2811.00100000010000
..................................................................................................................................ATACCATATAATATATATG......................................................................................................................................................................................................................................................................................................................1911.00101000000000
..............................................................................................................................................................................A------------------------------------A----------------------------------------CA------ACAGCA-ACATCAAG------------A---A---------C---..........................................................................................................................................................2120.50100000010000
.............................................................................................................................................................................................................................................................A------ACAGCA-ACATCAAG------------A---A---------C---..........................................................................................................................................................1820.50100100000000
............................................................................................................................................................................................................................................................CA------ACAGCA-ACATCAAG------------A---A---------C---..........................................................................................................................................................1920.50101000000000
droEug1
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AA------------------------ACAACA----------------------------------------CG------ACAGCAAACATCAAT------AA---CA---A---------G---AACAACTCGGAACCAAA--ACGGC-AA----------CAACAGCATCA--------------------------------------------------------------------------------GC---AA-------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AA------------------------ACAACA----------------------------------------CG------ACAGCA-ACATC---------------------------------AACAACATGGAACCAACACACGGC-AA----------CCACAACC-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----AAA---------------------CAACAACA----------------------------------------CG------ACAGCA-ACATCAAC------CG---CA---A---------C---AACAACACGGAACCAAA--ACGGC-AA----------CAACAACATCC--------------------------------------------------------------------------------GC---AA-------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATAACATATAATATATATGCATA-CAACA---------ACAACAA-----G---------------------------AACA----------------------------------------CG------ACAGCA-ACATCAAC------------A---G---------C---AACAACACGGAACCAAC--ACGGC-AA----------CAGCAACA-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----G---------------------------AACA----------------------------------------CG------ACAGCA-ACATC---------------A---A---------C---CACAACGCGGAAGCAAC--ACGGC-AG----------CAACAACA-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACAACAA-----G---------------------------AACA----------------------------------------CG------ACAGCA-ACATC---------------------------------AACAGCAAGGAACCAAC--ACGGC-AA----------CAACAACAT------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTAAGTAACCCCCCGCCCTTCCATTGAAAAA-------------------------------------------------------CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CAACA---------ACA--------------------------------------ACA----------------------------------------CG------ACAGCA-AA-ACAAC------AG---CA---A---------C---AAAAAACTGGAACCAAC--ACGGC-AT----------CAT---CATCC----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTAAGTAAACCCCCGCCCTTCCATTTAAAAA-------------------------------------------------------CACA--------------TTATATACCTTCTAAAAGTAAATATAATACCATATAATATATATGCATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACCGAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GTAATCAACGAACGACAAAAACAAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................AACA-A------------------CA---A---------C---AACAACACCGAACC............................................................................................................................................2313.003030000
............................................................................................................................................................................C--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACCGAACC............................................................................................................................................2913.003030000
.........................................................................................................................................................................................................................................................................................................................CGAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------G.........................2512.002000002
......................................................................................................................................................ATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACAAC..................................................................................................................................................................................................2112.002020000
TTAAGTAAACCCCCGCCCTTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.........................................................................................................................................................................................................................................................................A-A------------------CA---A---------C---AACAACACCGAACCAAC--ACGGC-.................................................................................................................................2811.001100000
.......................................................................................................................................................................................................................................................................................................................ACCGAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GC........................2811.001010000
..........................................................................................................................................................................................................................................................................................................................GAACCAAC--ACGGC-AG----------CAA---CATC...........................................................................................................2211.001010000
............................................................................................................................................................................C--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACCGAA..............................................................................................................................................2711.001010000
..........................................................................................................................................................................................................................................................................................................................................AG----------CAA---CATCC--------------------------------------------------------------------------------GTAATCAACGAACGACAA........2811.001100000
...........................................................................................................................................................................................................................................................................................................................AACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------..........................2211.001010000
................................................................................................................................................ATATGCATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------AC.....................................................................................................................................................................................................2411.001010000
.............................................................................................................................................................CA---------AGAAC--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AC........................................................................................................................................................2311.001001000
..............................................................................................................................................................................................................................................................................................CA---A---------C---AACAACACCGAACCAAC--ACGGC-A................................................................................................................................2711.001010000
........................................................................................CA--------------TTATATACCTTCTAAAAGTAA..............................................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGAACGACAAAAAC....1911.001010000
..........................................................................................................................................................................................................................................................................................................................GAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GT........................2511.001010000
......................................................................................................................................................ATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---........................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACCGAACC............................................................................................................................................2811.001010000
............................................................................................................................................................................C--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACCGAAC.............................................................................................................................................2811.001010000
..........................................................................................................................................................................AAC--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACC.................................................................................................................................................2611.001010000
....................................................................................................................................................................................................................................................................ACAACA-A------------------CA---A---------C---AACAACACCGAACC............................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATCAACGAACGACAAAAACAAG.2511.001010000
.....................................................................................................................................................................................................................................................................................................................ACACCGAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------..........................2811.001010000
..............................................................................................................................................................................................................................................................................................................................CAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GC........................2111.001010000
...........................................................................................................................................................................AC--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACCGAAC.............................................................................................................................................2911.001010000
................................................................................................................................................ATATGCATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACAAC..................................................................................................................................................................................................2711.001010000
............................AAA-------------------------------------------------------CACA--------------TTATATACCTTCTAAAA..................................................................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................AATACCATATAATATATATGC.....................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................AG----------CAA---CATCC--------------------------------------------------------------------------------GTAATCAACGAAC.............2311.001010000
................................................................................................................................................ATATGCATA-CAACA---------AGAAC--------------------------------------A----------------------------------------C..............................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................C--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GTAATCAACGAAC.............2911.001010000
....................................................................................................................................................................................................................................................................................................................AACACCGAACCAAC--ACGGC-AG----------CAA---C..............................................................................................................2511.001010000
.......................................................................................................................................................................................................................................................................ACA-A------------------CA---A---------C---AACAACACCGAACCA...........................................................................................................................................2311.001001000
............................................................................................................................................................................................................................................................................................................................ACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GTA.......................2411.001000100
........................................................................................CA--------------TTATATACCTTCTAAAA..................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................TTCCATTTAAAAA-------------------------------------------------------CACA--------------TTATATACC..........................................................................................................................................................................................................................................................................................................................................................2611.001010000
...........................................................................................................................................................................................................................................................................A------------------CA---A---------C---AACAACACCGAACC............................................................................................................................................1911.001010000
...........................................................................................................................................................................................................................................................................................................................................G----------CAA---CATCC--------------------------------------------------------------------------------GTAATCAACGAAC.............2211.001010000
........................................................................................................................................................................AGAAC--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACAACACC.................................................................................................................................................2811.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAACGAACGACAAAAACAAGG2411.001010000
...................................................................................................................................................................................................................................................................................................................CAACACCGAACCAAC--ACGGC-AG----------CAA---C..............................................................................................................2611.001010000
........................................................................................................................................................................................................................................................................................................................CCGAACCAAC--ACGGC-AG----------CAA---CA.............................................................................................................2211.001001000
.............................................................................................................................................................................................................................................................................................................................................................ATCC--------------------------------------------------------------------------------GTAATCAACGAACGACA.........2111.001100000
...............................................................................................................................................................................................................................................................................................................................AAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------..........................1811.001010000
...................................................................................................................................................TGCATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACAAC..................................................................................................................................................................................................2411.001010000
....................................................................................................................................................................................................................................................................................................................AACACCGAACCAAC--ACGGC-AG----------C....................................................................................................................2211.001010000
........................................................................................................................................................................................................................................................................................................................CCGAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------G.........................2611.001000001
........................................................................................................................................................................................................................................................................CA-A------------------CA---A---------C---AACAACACCGAACCAAC--ACGG...................................................................................................................................2811.001010000
......................................................................................................................................................ATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACA....................................................................................................................................................................................................1911.001010000
..............................................................................................................................................................................................................................................................................................CA---A---------C---AACAACACCGAACCAAC--ACGGC-AG----------C....................................................................................................................2911.001010000
...................................................................................................................................................................................................................................................................................................................CAACACCGAACCAAC--ACGGC-AG----------CAA---CA.............................................................................................................2711.001010000
........................................................................................................................................................................................................................................................................CA-A------------------CA---A---------C---AACAACACCGAACCAAC--ACGGC-.................................................................................................................................2911.001010000
........................................................................................................................................................................................................................................................................CA-A------------------CA---A---------C---AACAACACCGAA..............................................................................................................................................1920.501001000
....................................................................................................................................................................................................................................................................ACAACA-A------------------CA---A---------C---AACAACACCGAAC.............................................................................................................................................2420.501010000
......................................................................................................................................................................................................................................................................AACA-A------------------CA---A---------C---AACAACACCGA...............................................................................................................................................2040.251010000
.............................................................................................................................................................................................................................................................A------ACAACA-A------------------CA---A---------C---AACAACACC.................................................................................................................................................21200.102020000
...........................................................................................................................................................................AC--------------------------------------A----------------------------------------CA------ACAACA-A------------------CA---A---------C---AACA......................................................................................................................................................20200.051010000
droBip1
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TTATATACCTTCTAAAAGTAAATATAATACCATATAATATATATGCATA-CAACA---------AGAAC--------------------------------------A----------------------------------------CA------ACAACA-G------------------CA---G---------C---AACAACACCGAACCAAC--ACGGC-AG----------CAA---CATCC--------------------------------------------------------------------------------GTAATCAACGAACGACAA-AACAAGGSizeHit CountTotal NormTotal
No Reads
dp5
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TAATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CATCA---------A--ACC--------------------------------ACAACA----------------------------------------CG------ACAACA--------GAACAACAA---CA---A---------C---AACCAGAACGAACCACA--------------------------------------------AAAGAGGTACCAGAAACAGCACTACAAAAGATCAGCGGCCGATCCTTTG----------GAGCATCGATAATCG-------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................TAATATATATGCATA-CATCA---------A--ACC--------------------------------A............................................................................................................................................................................................................................................................2513.0030000000300
...................................................................................................................................................................................................................................................................................................................................................................................................CTACAAAAGATCAGCGGCC.....................................................1912.0020100100000
.................................................................................................................................................................................................................................................................................................................................A--------------------------------------------AAAGAGGTACCAGAAAC............................................................................1812.0020000020000
..............................................................................................................................................ATATATGCATA-CATCA---------A--ACC--------------------------------ACAACA----------------------------------------C..............................................................................................................................................................................................................2712.0020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCGGCCGATCCTTTG----------G.................................2112.0020200000000
...............................................................................................................................................................................................................................................................................................A---A---------C---AACCAGAACGAACCACA--------------------------------------------AAAGAG.......................................................................................2612.0020000002000
.................................................................................................................................................................................................................................................................................................................AACCAGAACGAACCACA--------------------------------------------AAAGAGGTA....................................................................................2612.0020100000100
...................................................................................................................................................................................................................................................................................................................................................................................................CTACAAAAGATCAGCGGCCG....................................................2012.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTTTG----------GAGCATCGATAATC....................2212.0020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCCGATCCTTTG----------G.................................1811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................AAGAGGTACCAGAAACAGCA........................................................................2011.0010000100000
.................................................................................................................................................................................................................................................................................................................................A--------------------------------------------AAAGAGGTACCAGAAACAGCACTAC....................................................................2611.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................AACAGCACTACAAAAGATCAGC.........................................................2211.0010000100000
...............................................................................................................................................TATATGCATA-CATCA---------A--ACC--------------------------------ACAACA----------------------------------------A..............................................................................................................................................................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCGGCCGATCCTTTG----------GAGCAT............................2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGGCCGATCCTTTG----------GAGCATCGA.........................2711.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGATCCTTTG----------GAGCATCGATA.......................2411.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACTACAAAAGATCAGCGGC......................................................1911.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGGCCGATCCTTTG----------G.................................2011.0010100000000
......................................................................................................................................................ATA-CATCA---------A--ACC--------------------------------ACAACA----------------------------------------CG------ACA....................................................................................................................................................................................................2311.0010100000000
..............................................................................................................................................................................................................................................................................................................................CACA--------------------------------------------AAAGAGGTACCAGAAACAGC.........................................................................2411.0010100000000
.................................................................................................................................................TATGCATA-CATCA---------A--ACC--------------------------------ACAACA----------------------------------------CG------A......................................................................................................................................................................................................2611.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCCGATCCTTTG----------GAGCATCGA.........................2611.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGATCCTTTG----------GAGCATCG..........................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................CCACA--------------------------------------------AAAGAGGTACCAGAAACAGC.........................................................................2511.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCGATCCTTTG----------GAGCATCG..........................2411.0010000001000
......................................................................................................................................................................................................................................................................AACA--------GAACAACAA---CA---A---------C---AACCA.....................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCCGATCCTTTG----------GAGCATCGAT........................2711.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGGCCGATCCTTTG----------GAGC..............................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................ACGAACCACA--------------------------------------------AAAGAGGTACCAG................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................CG------ACAACA--------GAACAACAA---CA---A---------C---AACCA.....................................................................................................................................................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGGCCGATCCTTTG----------GAGCATC...........................2611.0010100000000
............................................................................................................................................................................................................................................................................................................................ACCACA--------------------------------------------AAAGAGGTACCAGAAACAGCA........................................................................2711.0010100000000
....................................................................................................................................................................................................................................................................ACAACA--------GAACAACAA---CA---A---------C---AACCAGA...................................................................................................................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................GCACTACAAAAGATCAGCGGC......................................................2111.0010000000001
..............................................................................................................................................................................................................................................................................................................................................................................AAAGAGGTACCAGAAACAGCAC.......................................................................2211.0010001000000
..................................................................................................................................................................................................................................................................................................................................................................................................ACTACAAAAGATCAGCGGCC.....................................................2011.0010000100000
.......................................................................................................................................................................................................................................................................................................................AACGAACCACA--------------------------------------------AAAGAGGTACCA.................................................................................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................AACGAACCACA--------------------------------------------AAAGAGGTACC..................................................................................2211.0010100000000
..................................................................................................................................................................................................................CA----------------------------------------CG------ACAACA--------GAACAACAA---CA---A---------C---A.........................................................................................................................................................2411.0010100000000
...................................................................................................................................................TGCATA-CATCA---------A--ACC--------------------------------ACAACA----------------------------------------...............................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................AAGAGGTACCAGAAACAGCAC.......................................................................2111.0010001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCCGATCCTTTG----------GA................................1911.0010100000000
.....................................................................................................................................................................................................................................................................CAACA--------GAACAACAA---CA---A---------C---AACCAGAAC.................................................................................................................................................2711.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGATCCTTTG----------GAGCATC...........................2011.0010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................TACAAAAGATCAGCGGCCGATCCTTT.............................................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................GAACCACA--------------------------------------------AAAGAGGTACCAGAAACA...........................................................................2611.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTTG----------GAGCATCGATAATCG-------------------2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGCACTACAAAAGATCAGCGGCC.....................................................2311.0010000100000
................................................................................................................................................................................................................................................................................................................................CA--------------------------------------------AAAGAGGTACCAGAAACAGC.........................................................................2211.0010000100000
...............................................................................................................................................................................................................................................................................................................................ACA--------------------------------------------AAAGAGGTACCAGAAACAG..........................................................................2211.0010001000000
........................................................................................................................................................................................................................................................................................................................ACGAACCACA--------------------------------------------AAAGAGGTACCAGAA..............................................................................2511.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................................................TACAAAAGATCAGCGGCCGATC.................................................2211.0010100000000
.........................................................................................................................................................................................................................................................................................AA---CA---A---------C---AACCAGAACGAACCACA--------------------------------------------A............................................................................................2411.0010100000000
.............................................................................................................................................................................C--------------------------------ACAACA----------------------------------------CG------ACAACA--------GAACAACA.................................................................................................................................................................................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGGCCGATCCTTTG----------GAGCATCG..........................2711.0010000001000
............................................................................................................................................................................................................................................................................................................................ACCACA--------------------------------------------AAAGAGGTACCAGAA..............................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................AACA--------GAACAACAA---CA---A---------C---AACCAG....................................................................................................................................................2311.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCCGATCCTTTG----------GAGCATCGATAAT.....................2911.0010000001000
.................................................................................................................................................................................................................ACA----------------------------------------CG------ACAACA--------GAACAACAA---CA---A---------C---AA........................................................................................................................................................2611.0010000000010
...................................................................................................................................................................................................................................................................................................A---------C---AACCAGAACGAACCACA--------------------------------------------.............................................................................................1911.0010010000000
.................................................................................................................................................................................................................ACA----------------------------------------CG------ACAACA--------GAACAAC..................................................................................................................................................................................1811.0011000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCGGCCGATCCTTTG----------GA................................2211.0010010000000
..........................................................................................................................................................................................................................................................................................A---CA---A---------C---AACCAGAACGAAC.............................................................................................................................................1811.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................AACAGCACTACAAAAGATCAGCGGCC.....................................................2611.0010100000000
.........................................................................................................................................................................................................................................................................A--------GAACAACAA---CA---A---------C---AACCAGAACGA...............................................................................................................................................2511.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCGATCCTTTG----------GAGCATCG..........................2311.0010100000000
............................................................................................................................................................................................................................................................CG------ACAACA--------GAACAACAA---CA---A---------..............................................................................................................................................................2020.5010100000000
.........................................................................................................................................................................................................................................................................A--------GAACAACAA---CA---A---------C---AACCAGA...................................................................................................................................................2130.3310100000000
...................................................................................................................................................................................................................................................................................AACAACAA---CA---A---------C---AACCAGAAC.................................................................................................................................................2140.2510001000000
.........................................................................................................................................................................................................................................................................A--------GAACAACAA---CA---A---------C---AACCA.....................................................................................................................................................1970.1410001000000
droPer2
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACA--------------TAATATACCTTCTAA-AGTAAATATAATACCATATAATATATATGCATA-CATCA---------A--ACCA-----------------------------CAACAACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------AACCAGAACGAACCACAAAAGAGGTACCAGAAACAGCACTACAAAAGATCAGCAGCCGATCCTTTG----------GAGCATCGATAATCG-------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................ACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------AACC..........................................................................................................2513.003300000
......................................................................................................................................................................................................................................................................AACA--------G------------A---A---------C---AACAAC--------------------------------------AACCAGAAC.....................................................................................................2313.003300000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAGCCGATCCTTTG----------GAGC..............................2413.003111000
............................................................................................................................................................................................................................................................CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------AACCAGAAC.....................................................................................................2713.003300000
............................................................................................................................................................................................................................................................CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------AACC..........................................................................................................2213.003300000
............................................................................................................................................................................................................................................................CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------..............................................................................................................1823.006600000
.................................................................................................................................................................................................................................................................................................................................................................................................CACTACAAAAGATCAGCAGCCGATCCTT..............................................2812.002020000
.....................................................................................................................................................CATA-CATCA---------A--ACCA-----------------------------CAACAACA----------------------------------------CG------AC.....................................................................................................................................................................................................2612.002200000
.....................................................................................................................................................................................................................................................................CAACA--------G------------A---A---------C---AACAAC--------------------------------------AACC..........................................................................................................1912.002200000
.......................................................................................................................................................................................................................................................................ACA--------G------------A---A---------C---AACAAC--------------------------------------AACCAGG.......................................................................................................2011.001100000
.......................................................................................................................................................TA-CATCA---------A--ACCA-----------------------------CAACAACA----------------------------------------C..............................................................................................................................................................................................................2111.001010000
..AAGTAAACCCCCGCCCTTCCAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................................................................................................................................................................ACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------AAC...........................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................AAGATCAGCAGCCGATCCTTTG----------GAGC..............................2611.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACAGCACTACAAAA................................................................1811.001001000
...................................................................................................................................................................................................................A----------------------------------------CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------AACCAGA.......................................................................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAGCCGATCCTTTG----------GAGCATCGA.........................2711.001000001
......................................................................................................................................................ATA-CATCA---------A--ACCA-----------------------------CAACAACA----------------------------------------CG------A......................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................AACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AAC.......................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................CACTACAAAAGATCAGCAC.......................................................1911.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAGCCGATCCTTTG----------GA................................2211.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCCGATCCTTTG----------..................................1911.001001000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCCGATCCTTTG----------GAGCATCGAT........................2711.001000001
...............................................................................................................................................................................................................CAACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AAC.......................................................................................................................................................2011.001100000
......................................................................................................................................................ATA-CATCA---------A--ACCA-----------------------------CAACAACA----------------------------------------CG------G......................................................................................................................................................................................................2411.001100000
.............................................................................................................................................................................................................AACAACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------..............................................................................................................2511.001100000
.......................................................................................................................................................................................................................................................................ACA--------G------------A---A---------C---AACAAC--------------------------------------AACCAGA.......................................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................AACAAC--------------------------------------AACCAGAACGAACCAC..............................................................................................2211.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................ACTACAAAAGATCAGCAGCCG....................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAGATCAGCAGCCGA...................................................1911.001001000
................................................................................................................................................................................................................AACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------..............................................................................................................2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAGCCGATCCTTTG----------..................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................CCAGAAACAGCACTACAAA.................................................................1911.001001000
................................................................................................................................................................................................................AACA----------------------------------------CG------ACAACA--------G------------A---A---------C---AACAAC--------------------------------------AACCAGA.......................................................................................................2911.001100000
droWil2
TTAAGTAAACCCCCGCCCTTCCATTTAAA-C-A--ACA-AACACAAAAATAATAA----CAAGAGAAAACGAAAAAAAAAAACAA-CACA--------------TTATATACCTTCTAA-AGTAAATATAATACCATATAATATGTATGCATTACAAACACGACAACAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGCATGGCGGAAACTG---------ACCAACAATCAAAAACAACA------------------------------------------------------------CTTAGCACAAAACCAGGACACCGACACCGA-------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................AGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTATC---------------............................................................................................................................................................................2117.00700070
..................................................................................................................................................................................................................................................................................................................GCATGGCGGAAACTG---------ACCAACAAT........................................................................................................................2413.00300030
................................................................................................................................................................................................................ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---..........................................................................................................................................................1913.00300030
........................................................................................................................................................................................................................................................................GA-TTATC---------------A---G---------C---TGCATGGCGGA...............................................................................................................................................2113.00300030
.................................................................................................................................................................GACAACAACAACAGAAGAA.......................................................................................................................................................................................................................................................................................1912.00200110
.................................................................................................................................................................................................................TCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGCATGGC..................................................................................................................................................2612.00201010
................................................................................................................................................................................................................ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGCATGGC..................................................................................................................................................2712.00200020
.........................................................................................................................................................................CAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGG..................................................................................................................................................................................................2212.00200110
.........................................................................................................................................................................................................................................................................A-TTATC---------------A---G---------C---TGCATGGCGGAAACT...........................................................................................................................................2412.00200110
............................................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------------CTTAGCACAAAACCAGGA...............................2012.00200020
..................................................................................................................................................................................................................CA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGCATGGC..................................................................................................................................................2512.00200020
...............................................................................................................................................................................................................................................................................................A---G---------C---TGCATGGCGGAAACTG---------ACCAAC...........................................................................................................................2512.00201100
...............................................................................................................................................................................................................................................................................................A---G---------C---TGCATGGCGGAAACTG---------ACCAACA..........................................................................................................................2612.00200020
.................................................................................................................................................................................GAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTATC---------------............................................................................................................................................................................2012.00200011
..................................................................................................................................................................ACAACAACAACAGAAGAAG---------------------------AT.........................................................................................................................................................................................................................................................2112.00200200
...............................................................................................................................................................................................................................................................................C---------------A---G---------C---TGCATGGCGGAAACT...........................................................................................................................................1912.00201100
......................................................................................................................................................................CAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGG..................................................................................................................................................................................................2511.00100010
..........................................................................................................................................................................................................................................................................................................................................................AACA------------------------------------------------------------CTTAGCACAAAACCA..................................1911.00100010
...........................................................................................................................................................AAACACGACAACAACAACAGAA..........................................................................................................................................................................................................................................................................................2211.00100010
..........................................................................................................................................................CAAACACGACAACAACAACAGAAG.........................................................................................................................................................................................................................................................................................2411.00100010
.............................................................................................................................................................ACACGACAACAACAACAGAAGAAG---------------------------A..........................................................................................................................................................................................................................................................2511.00100010
...................................................................................................................................................................................................................................................................................................................................................CAAAAACAACA------------------------------------------------------------CTTAGCACAAAAC....................................2411.00100010
............................................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------------CTTAGCACAAAACCAG.................................1811.00100010
........................................................................................................................................................................................................................................................................GA-TTATC---------------A---G---------C---TGCATGGC..................................................................................................................................................1811.00100010
........................................................................................................................................................................ACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGG..................................................................................................................................................................................................2311.00100010
.....................................................................................................................................................................ACAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------C.....................................................................................................................................................................................................2311.00100010
.................................................................................................................................................................................................................................................................................................................TGCATGGCGGAAACTG---------ACCAACAAT........................................................................................................................2511.00100010
...........................................................................................................................................................AAACACGACAACAACAACAGAAGAA.......................................................................................................................................................................................................................................................................................2511.00100010
...................................................................................................................................................................................................................................................................................................................................................CAAAAACAACA------------------------------------------------------------CTTAGCA..........................................1811.00100010
...................................................................................................................................................................................................................................................................................................................................................CAAAAACAACA------------------------------------------------------------CTTAGCAC.........................................1911.00101000
...............................................AATAATAA----CAAGAGAAAACGAAA.................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCACAAAACCAGGACA.............................2011.00100010
.....................................................................................................................................................................................................................................................................CAGGA-TTATC---------------A---G---------C---TGCATGGCGG................................................................................................................................................2311.00101000
...............................................................................................................................................................ACGACAACAACAACAGAAGAAG---------------------------...........................................................................................................................................................................................................................................................2211.00100010
.....................................A-AACACAAAAATAATAA----CAAGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
............................................................AAGAGAAAACGAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
....................................................................................................................................................................AACAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAG...................................................................................................................................................................................................2611.00100010
...........CCCGCCCTTCCATTTAAA-C-A--ACA-....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
..................................................AATAA----CAAGAGAAAACGA...................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
......................................................................................................................................................................CAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------......................................................................................................................................................................................................2111.00100100
...................................................................................................................................................................CAACAACAACAGAAGAAG---------------------------AT.........................................................................................................................................................................................................................................................2011.00100100
...........................................................................................................................................................................................................................................................................................................................................................ACA------------------------------------------------------------CTTAGCACAAAACCAGGAC..............................2211.00100001
.................................................................................................................................................................................................................TCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---T.........................................................................................................................................................1911.00100010
.................................................................................................................................................................................................................................................................................................................................................ATCAAAAACAACA------------------------------------------------------------CTTAGC...........................................1911.00101000
.................................................................................................................................................................................................................................................................................................................TGCATGGCGGAAACTG---------ACCAAC...........................................................................................................................2211.00100010
.......................................................................................................................................................................AACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAG...................................................................................................................................................................................................2311.00100100
..................................................AATAA----CAAGAGAAAACGAA..................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................................................................................................................................................ACACGACAACAACAACAGAA..........................................................................................................................................................................................................................................................................................2011.00100010
.......................................................................................................................................................................AACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-T...............................................................................................................................................................................................2611.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................TAGCACAAAACCAGGACACCGA.........................2211.00100100
...................................................................................................................................................................................................................................................................................................................................................CAAAAACAACA------------------------------------------------------------CTTAGCACAAAACCAG.................................2711.00100010
.........................................CACAAAAATAATAA----CAAGA...........................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.................................................................................................................................................................GACAACAACAACAGAAGA........................................................................................................................................................................................................................................................................................1811.00101000
.............................................................................................................................................................ACACGACAACAACAACAGAAGAAG---------------------------AT.........................................................................................................................................................................................................................................................2611.00100010
...........................................................................................................................................................................ACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTAT............................................................................................................................................................................................2511.00101000
......................................................................................................................................................................................................................................................................................................................................................AAACAACA------------------------------------------------------------CTTAGCACAAA......................................1911.00100010
............................................AAAAATAATAA----CAAGAGAAAACGAAAA................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
...................................................................................................................................................................................................................................................................................................................................................CAAAAACAACA------------------------------------------------------------CTTAGCACA........................................2011.00100010
.........................................................................................................................................................................CAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------......................................................................................................................................................................................................1811.00100010
.........................................................................................................................................................................................................................................................................A-TTATC---------------A---G---------C---TGCATGGCGGA...............................................................................................................................................2011.00100100
.............................................................................................................................................................................................................................................................................................................C---TGCATGGCGGAAACTG---------ACC..............................................................................................................................2011.00100100
....................................................................................................................................................GCATTACAAACACGACAACAACAACA.............................................................................................................................................................................................................................................................................................2611.00101000
..............................................................................................................................................................................GAAGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---T.........................................................................................................................................................2711.00100100
............................................AAAAATAATAA----CAAGAGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.................................................................................................................................................................GACAACAACAACAGAAGAAG---------------------------AT.........................................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................CAACAACAACAGAAGAAG---------------------------ATCA----------------------------------------C..............................................................................................................................................................................................................2311.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTTAGCACAAAACCAGGAC..............................1911.00110000
.....................................................................................................................................................................ACAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGG..................................................................................................................................................................................................2611.00100100
................................................................................................................................................................................................................ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGCATGGCG.................................................................................................................................................2811.00100010
....................................................................................................................................................................AACAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGG..................................................................................................................................................................................................2711.00101000
...................................................................................................................................................................................................................................................................................................................................................CAAAAACAACA------------------------------------------------------------CTTAGCACAA.......................................2111.00100100
......................................................................................................................................................................................................................................................................................................................................................AAACAACA------------------------------------------------------------CTTAGCACAAAACCA..................................2311.00100010
..........................................................................................................................................................................................................................................................................................................................................................AACA------------------------------------------------------------CTTAGCACAAAACCAGGA...............................2211.00100001
................................................................................................................................................................CGACAACAACAACAGAAGAAG---------------------------ATCA----------------------------------------...............................................................................................................................................................................................................2511.00101000
.............................................................................................................................................................................................................................................................C-------CAGGA-TTATC---------------A---G---------C---TGCATGGC..................................................................................................................................................2211.00100010
...........................................CAAAAATAATAA----CAAGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............................................AATAATAA----CAAGAGAAAACGA...................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
............................................................................................................................................................................................................................................................................TATC---------------A---G---------C---TGCATGGCGGAAACTG---------.................................................................................................................................2311.00101000
.............................................................................................................................................................................................................................................................C-------CAGGA-TTATC---------------A---G---------C---TGCATG....................................................................................................................................................2011.00100100
....................................................TAA----CAAGAGAAAACGAAAA................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................................................................AGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGC.......................................................................................................................................................2711.00100010
.................................................................................................................................................................................................................................................................................................................................................ATCAAAAACAACA------------------------------------------------------------CTTAGCACAAA......................................2411.00100100
................................................................................................................................................................................................................ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---T.........................................................................................................................................................2011.00100010
.............................................................................................................................................................ACACGACAACAACAACAGA...........................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................GGA-TTATC---------------A---G---------C---TGCATGGCGGA...............................................................................................................................................2211.00100100
...................................................................................................................................................................................AG---------------------------ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------..............................................................................................................................................................2011.00100010
................................................................................................................................................................CGACAACAACAACAGAAGAAG---------------------------AT.........................................................................................................................................................................................................................................................2311.00100010
................................................ATAATAA----CAAGAGAAAACGA...................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.......................................................................................................................................................................................................................................................................................................................................................AACAACA------------------------------------------------------------CTTAGCACAAAACCAG.................................2311.00100010
.................................................................................................................................................................GACAACAACAACAGAAGAAG---------------------------ATC........................................................................................................................................................................................................................................................2311.00100010
....................................................................................................................................................................................................................................................................................................................................................AAAAACAACA------------------------------------------------------------CTTAGCACA........................................1911.00100010
................................................................................................................................................................................AGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTAT............................................................................................................................................................................................2011.00100010
........................................ACACAAAAATAATAA----CAAGAGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
............................................................AAGAGAAAACGAAAAAAAAA...........................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..................................................................................................................................................................................................................................................................................................................GCATGGCGGAAACTG---------ACCA.............................................................................................................................1911.00100010
..................................................................................................................................ATACCATATAATATGTATGC.....................................................................................................................................................................................................................................................................................................................2011.00100100
........................................................................................................................................................................................................................................................................................................................................................ACAACA------------------------------------------------------------CTTAGCACAAAACC...................................2011.00100010
................................................................................................................................................................................................................ATCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGC.......................................................................................................................................................2211.00100010
..................................................................................................................................................ATGCATTACAAACACGACA......................................................................................................................................................................................................................................................................................................1911.00100010
.................................................................................................................................................................GACAACAACAACAGAAGAAG---------------------------ATCA----------------------------------------CC-------C.....................................................................................................................................................................................................2711.00100010
.................................................................................................................................................................................................................TCA----------------------------------------CC-------CAGGA-TTATC---------------A---G---------C---TGCATGGCG.................................................................................................................................................2711.00101000
..........................................................................................................................................................................AACAGAAGAAG---------------------------ATCA----------------------------------------CC-------CAGGA-TTAT............................................................................................................................................................................................2611.00100001
.................................................................................................................................................................................................................................................................................................................TGCATGGCGGAAACTG---------AC...............................................................................................................................1811.00100010
..............................................................................................................................................................CACGACAACAACAACAGAAG.........................................................................................................................................................................................................................................................................................2011.00100010
................................................................................................................................................................................................................................................................................................................................................AATCAAAAACAACA------------------------------------------------------------CTTAGCACAA.......................................2411.00100010
...............................................................................................................................................................................................................................................................................................A---G---------C---TGCATGGCGGAAACT...........................................................................................................................................1811.00110000
.........................................CACAAAAATAATAA----CAAGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
......................................................................................................................................................................................................................................................................AGGA-TTATC---------------A---G---------C---TGCATGGCG.................................................................................................................................................2111.00100010
.............................................................................................................................................................................................................................................................................................................C---TGCATGGCGGAAACTG---------AC...............................................................................................................................1911.00100010
.......................................AACACAAAAATAATAA----CAAGAGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
....................................................................................................................................................................................................................................................................................................................ATGGCGGAAACTG---------ACCAACA..........................................................................................................................2011.00100010
.....................................................................................................................................................................................................................................................................................................................TGGCGGAAACTG---------ACCAAC...........................................................................................................................1811.00110000
............................................................................................................................................................................................................................................................................................................................AACTG---------ACCAACAATCAAAAACAACA------------------------------------------------------------CTT..............................................2811.00101000
.................................................................................ACAA-CACA--------------TTATATACCTT........................................................................................................................................................................................................................................................................................................................................................1920.50100010
.....................................................................................................................................................................ACAACAACAGAAGAAG---------------------------AT.........................................................................................................................................................................................................................................................1830.33100010
....................................................................................................................................................................AACAACAACAGAAGAAG---------------------------AT.........................................................................................................................................................................................................................................................1930.33100010
....................................................................................................................................................................AACAACAACAGAAGAAG---------------------------A..........................................................................................................................................................................................................................................................1860.17100010
droVir3
TTAAGTAAACCCCCGCCCTTCCATTTAAA-ACAAAACAAAACAAAA--AAAAAAACAAACAAAACAAAACAAAA-----AAACAAACACAAAACAAAAACAAAAACATATACCTTCTAA-AGTAAATATAATA-CATATAATATATATGCATA-CAACA---------ATAAAA--------------------------------ACAACA--CGCAACCG-GGTAGTA-----AACAACAAGTAAAAA----AAAACAACAGCA-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAGAA--T---------------------------------------------------------------------------------------CAACA----------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................AACA--CGCAACCG-GGTAGT......................................................................................................................................................................................................................................1813.003001000000000001100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAA..................................................................................................................2412.002001000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................AAACAACAGCA-ACAACAAG------------A---A---------C---AGC.......................................................................................................................................................2512.002001100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AA--------------------------------ACAACA--CGCAACCG-GGTAGTA-----AA..............................................................................................................................................................................................................................2512.002000000000000000000000110000000000000000000000000000000000000000
..........................................................................................................................................................................AAAA--------------------------------ACAACA--CGCAACCG-GGTA........................................................................................................................................................................................................................................2212.002000000000000000100000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................CAACAAG------------A---A---------C---AGCA------------T--CTGG...................................................................................................................................1912.002000000000000000000000200000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AACAAG------------A---A---------C---AGCA------------T--CTGGC-.................................................................................................................................1912.002000000000000000000000000000000000200000000000000000000000000000
......................................................................................................AAACATATACCTTCTAA-AGTAAAT............................................................................................................................................................................................................................................................................................................................................2412.002000100000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................................AACCG-GGTAGTA-----AACAACAAGT......................................................................................................................................................................................................................2212.002000200000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................A---A---------C---AGCA------------T--CTGGC-AA----------CAAGA................................................................................................................2012.002001000000000000000000000000000001000000000000000000000000000000
......................................................................................................................................................................................................................................................................AGCA-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-.................................................................................................................................2512.002000000000000000001000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GCA-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-.................................................................................................................................2412.002000100000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................A-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-.................................................................................................................................2212.002001000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................CA-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-.................................................................................................................................2312.002000100000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GCA-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------C....................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................AACAAAAACAAAAACATATACCTTC.......................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................A---A---------C---AGCA------------T--CTGGC-AA----------CAAGAA--T---------------------------------------------------------------------------------------CAACA----------------2711.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................CAAAACAAAAACAAAAACATATACC..........................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................A---------C---AGCA------------T--CTGGC-AA----------CAAGAA--T---------------------------------------------------------------------------------------.....................2111.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................AAACAAAAACATATACCTTCTAA-...................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CA...................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAA--------------------------------ACAACA--CGCAACCG-GGT.........................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................AAAACAACAGCA-ACAACAAG------------A---A---------C---AGC.......................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAG.................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................A---A---------C---AGCA------------T--CTGGC-AA----------CAAGAA--.............................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.................CTTCCATTTAAA-ACAAAACAAAACA................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................CCATTTAAA-ACAAAACAAAACAAAA--...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................CAAAAACATATACCTTCTAA-AGTAAAT............................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAA--------------------------------ACAACA--CGCAACCG-GGTAGTA-----AA..............................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CCG-GGTAGTA-----AACAACAAGTAA....................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................ACA--CGCAACCG-GGTAGTA-----A...............................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ACAACAGCA-ACAACAAG------------A---A---------C---AGCA------------T--CT.....................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
......................................................................................CACAAAACAAAAACAAAAACATATACCTT........................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................AACA--CGCAACCG-GGTAGTA-----................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................ACA--CGCAACCG-GGTAGTA-----AACA............................................................................................................................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAGAA--T---------------------------------------------------------------------------------------.....................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CAACAAG------------A---A---------C---AGCA------------T--CTGGC-.................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................A--------------------------------ACAACA--CGCAACCG-GGT.........................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................AAACAAAAACATATACCTT........................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AACAAG------------A---A---------C---AGCA------------T--CTGGC-A................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................ATATACCTTCTAA-AGTAAAT............................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CA-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAA..................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AAAA--------------------------------ACAACA--CGCAACCG-GGTAGC......................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................AAACATATACCTTCTAA-AGT................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................A---------ATAAAA--------------------------------ACAACA--CGCAACCG-GGTA........................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................A-----AACAACAAGTAAAAA----AAAA.........................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................ATA-CAACA---------ATAAAA--------------------------------ACAACA--CGC..................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAGA................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AACATATACCTTCTAA-AGTA...............................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAGA................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CA-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------C....................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................A---------ATAAAA--------------------------------ACAACA--CGCAACCG-G...........................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....GTAAACCCCCGCCCTTCCATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AGTAAAAA----AAAACAACAGCA-................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................ATA-CAACA---------ATAAAA--------------------------------ACAACA--CGCAACCG-G...........................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AG------------A---A---------C---AGCA------------T--CTGGC-AA----------CA...................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................ATATACCTTCTAA-AGTAAATATA.........................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................ACCG-GGTAGTA-----AACAACA.........................................................................................................................................................................................................................1811.001000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAG.................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................AA----AAAACAACAGCA-ACAACAAG------------A---A---------C---AGC.......................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AAA--------------------------------ACAACA--CGCAACCG-GGTAGT......................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CAACAGCA-ACAACAAG------------A---A---------C---AGCA------------T--CTG....................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................A---A---------C---AGCA------------T--CTGGC-AA----------CAAG.................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................G------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAGAA--.............................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................ACATATACCTTCTAA-AGTA...............................................................................................................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------C....................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
.................................................................AAAACAAAA-----AAACAAACACAAAACA............................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................AACAAAA-----AAACAAACACAAAACAA...........................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------.....................................................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AACCG-GGTAGTA-----AACAACAAGTAAAA..................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CA...................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AAAACATATACCTTCTAA-AGTAAATATA.........................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CAACA--CGCAACCG-GGTAGTA-----AAC.............................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................AACAACAGCA-ACAACAAG------------A---A---------C---AGCA------------T--CT.....................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................AAACAACAGCA-ACAACAAG------------A---A---------C---AGCA------------T--CT.....................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAGA................................................................................................................2611.001000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................TATATGCATA-CAACA---------ATAAAA--------------------------------ACAACA--CG...................................................................................................................................................................................................................................................2911.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................CAAAAACATATACCTTCTAA-AGTA...............................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAG------------A---A---------C---AGCA------------T--CTGGC-AA----------.....................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................ACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAAGA................................................................................................................2511.001000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------C....................................................................................................................2011.001000000000000000000000000000000000000000000010000000000000000000
......................................................................................................................................................................................................................CGCAACCG-GGTAGTA-----AAC.............................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................AG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAA..................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AAAACATATACCTTCTAA-AGT................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................AACAAAAACATATACCTTCTAA-AGTAA..............................................................................................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................A-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------CAA..................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................A-ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-AA----------C....................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................ACAACAAG------------A---A---------C---AGCA------------T--CTGGC-.................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................AAACAAACACAAAACAAAAAC.......................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ACAACAGCA-ACAACAAG------------A---A---------C---AGC.......................................................................................................................................................2320.501000000000000000001000000000000000000000000000000000000000000000
............................................AA--AAAAAAACAAACAAAACAAAACA....................................................................................................................................................................................................................................................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
.........................................................AACAAAACAAAACAAAA-----AAACAA......................................................................................................................................................................................................................................................................................................................................................................................2330.331000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................AGCA-ACAACAAG------------A---A---------C---AGCA------------T--.......................................................................................................................................2030.331000000000000000000000000000000000010000000000000000000000000000
.......................TTTAAA-ACAAAACAAAACA................................................................................................................................................................................................................................................................................................................................................................................................................................1940.251000000000000000000000010000000000000000000000000000000000000000
....................................................................................AACACAAAACAAAAACAAA....................................................................................................................................................................................................................................................................................................................................................................1970.141001000000000000000000000000000000000000000000000000000000000000
.................................................................AAAACAAAA-----AAACAAACAC..................................................................................................................................................................................................................................................................................................................................................................................1980.131001000000000000000000000000000000000000000000000000000000000000
................................AAAACAAAACAAAA--AAAAAAACAA.................................................................................................................................................................................................................................................................................................................................................................................................................2490.111001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AAA----AAAACAACAGCA-ACAACA..........................................................................................................................................................................................21100.101000000000000000000000000100000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AAAAA----AAAACAACAGCA-AC..............................................................................................................................................................................................19120.081000000000000001000000000000000000000000000000000000000000000000
....................................................AAACAAACAAAACAAAACA....................................................................................................................................................................................................................................................................................................................................................................................................19120.081001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AAAA----AAAACAACAGCA-ACA.............................................................................................................................................................................................19130.081001000000000000000000000000000000000000000000000000000000000000
.....................................................AACAAACAAAACAAAACA....................................................................................................................................................................................................................................................................................................................................................................................................18170.061000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................ACAACAGCA-ACAACAAG------------A---A---------C---A.........................................................................................................................................................21190.051000000000000000001000000000000000000000000000000000000000000000
............................A-ACAAAACAAAACAAAA--AAA........................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000100000000000000000000000000000000000000000000000
.........................................................AACAAAACAAAACAAAA-----AAA.........................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AA----AAAACAACAGCA-ACAA............................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TTAAGTAAACCCCCGCCCTTCCATTTAAA-A-------------------------------------------------------CACAAAACAA-AACAAAAACATATACCTTCTAA-AGTAAATATAATA-CATATAATATATATGCATG-CAACA---------ATAAA-A-----G---------------------------AACACGCGCAACCG-GGTAGTA------------------------------------AACAAGAAT------AACAACAAAAACAGCATCATCAGCAACAA--------------------A----------------ACAT---------------------------------------------------------------------------------------CAACA----------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................AAA-A-----G---------------------------AACACGCGCAACCG-GGTA........................................................................................................................................................................................................................................2312.002100001
..........................................................................................................................................................................AAA-A-----G---------------------------AACACGCGCAACCG-GGT.........................................................................................................................................................................................................................................2212.002100001
........................................................................................................................................................................ATAAA-A-----G---------------------------AACACGCGCAACCG-GGT.........................................................................................................................................................................................................................................2412.002200000
........................................................................................................................................................................ATAAA-A-----G---------------------------AACACGCGCAACC..............................................................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................G---------------------------AACACGCGCAACCG-GGT.........................................................................................................................................................................................................................................1811.001100000
.........................................................................................................................................................................................................................................................................................................TCATCAGCAACAA--------------------A----------------ACAT---------------------------------------------------------------------------------------CAACA----------------2311.001100000
...........................................................................................................TATACCTTCTAA-AGTAAATATAATA-CA...................................................................................................................................................................................................................................................................................................................................2711.001100000
....................................................................................................................................................................................G---------------------------AACACGCGCAACCG-GGTAGT......................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................AACAGCATCATCAGCAACAA--------------------A----------------ACAT---------------------------------------------------------------------------------------C....................2611.001100000
.................................................................................................................................AATA-CATATAATATATATGC.....................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................................................................................................................A-A-----G---------------------------AACACGCGCAACCG-GGTA........................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................................................................................................AACAAGAAT------AACAACAAAAACAGCAT.................................................................................................................................................................2611.001100000
......................................................................................................................................................ATG-CAACA---------ATAAA-A-----G---------------------------AACACGCGC..................................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................................................................ACACGCGCAACCG-GGTAGTA------------------------------------AACAAGA..........................................................................................................................................................................................2711.001100000
...............................................................................................................................................................................................................................GGTAGTA------------------------------------AACAAGAAT------AACAACA...........................................................................................................................................................................2311.001100000
............................................................................................ACAA-AACAAAAACATATACCTT........................................................................................................................................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................................................ACAGCATCATCAGCAACAA--------------------A----------------ACAT---------------------------------------------------------------------------------------CAAC.................2811.001100000
........................................................................................................................................................................ATAAA-A-----G---------------------------AACACGCGCAACCG-GGTAGT......................................................................................................................................................................................................................................2711.001100000
....................................................................................................................................................................................G---------------------------AACACGCGCAACCG-GGTAGTA------------------------------------AAC..............................................................................................................................................................................................2511.001000010
..............................................................................................................................................................A---------ATAAA-A-----G---------------------------AACACGCGCAACCG-GGTAGT......................................................................................................................................................................................................................................2811.001000001
..............................................................................................................................................ATATATGCATG-CAACA---------ATAAA-A-----G---------------------------AACACG.....................................................................................................................................................................................................................................................2911.001100000
...........................................................................................................................................................................AA-A-----G---------------------------AACACGCGCAACCG-GGT.........................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................AT------AACAACAAAAACAGCATCATC.............................................................................................................................................................2311.001100000
..............................................................................................................................................................A---------ATAAA-A-----G---------------------------AACACGCGCAACCG-GGT.........................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................................AGTA------------------------------------AACAAGAAT------AACAACAAA.........................................................................................................................................................................2211.001100000
.................................................................................................................................................................................................................................................................................AT------AACAACAAAAACAGCATCAT..............................................................................................................................................................2211.001100000
.................................................................................................................................................................................................................................................................................................AAACAGCATCATCAGCAAC.......................................................................................................................................................1911.001000100
....................................................................................................AAAAACATATACCTTCTAA-AGTAAATAT..........................................................................................................................................................................................................................................................................................................................................2811.001100000
...............................................................................................................................................................................................................................................................................................AAAAACAGCATCATCAGCAACAA--------------------A----------------A...............................................................................................................2511.001100000
........................................................................................................................................................................ATAAA-A-----G---------------------------AACACGCGCAACCG-G...........................................................................................................................................................................................................................................2211.001000001
droGri2
TTAAGTAAACCCCCGCCCTTCCATTTAAACA-CACACAAAACAAAAAAAAAACAA----CAAAAAAAAACAAAAAA-------------A--------------ACATATACCTTCTAA-AGTAAATATAATA-CATATAATATATATGCATA-TAACA---------ATAAAAA-----C------------------------AACAACA--CGCAGCCGGGGTAGTATCAACATCAACAACTTGAAACGCGACAACAACAGCA-ACAA---------------CA---A---------C---AAGAAGA---------T--CGGGCGAA----------CAACAACATCT----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................A---------------CA---A---------C---AAGAAGA---------T--CGGGCGAA----------CAACA................................................................................................................2612.00211
..............................................................................................................................................................................................................ACAACA--CGCAGCCGGGGTAGTATCA..................................................................................................................................................................................................................................2512.00202
........................................................................................................................................................................................................................................................AACGCGACAACAACAGCA-ACAA---------------C............................................................................................................................................................................2311.00110
...............................................................................................................................................................................................................CAACA--CGCAGCCGGGGTAGTATC...................................................................................................................................................................................................................................2311.00110
.............................................................................................................................................................................................................................................................................................................C---AAGAAGA---------T--CGGGCGAA----------CA...................................................................................................................1911.00110
.......................................................................................................................................................................................................................................................................GCA-ACAA---------------CA---A---------C---AAGAAGA---------T--CG.....................................................................................................................................2111.00110
........................................................................................................ACATATACCTTCTAA-AGTA...............................................................................................................................................................................................................................................................................................................................................1911.00110
.......................................................................................................................................................................................................................................................................GCA-ACAA---------------CA---A---------C---AAGAAGA---------T--C......................................................................................................................................2011.00110
..............................................................................................................................................................................A-----C------------------------AACAACA--CGCAGCCGGG...........................................................................................................................................................................................................................................1911.00110
................................................................................................................................................................................................................................................CAACTTGAAACGCGACAACAACAGCA-ACA.............................................................................................................................................................................................2911.00110
...................................................................................................................................................................................................................................................................................................................GAAGA---------T--CGGGCGAA----------CAACA................................................................................................................1911.00101
..................................................................................................................................................................................................................CA--CGCAGCCGGGGTAGTATCAACATC.............................................................................................................................................................................................................................2611.00110
..................................................................................................................................................................................................................................................................................................................AGAAGA---------T--CGGGCGAA----------CAAC.................................................................................................................1911.00110
..............................................................................................................................................................................................................................................................................A---------------CA---A---------C---AAGAAGA---------T--CGGGCGAA----------.....................................................................................................................2111.00110
....................................................................................................................................................................................................................................................................................................................AAGA---------T--CGGGCGAA----------CAACAACATC...........................................................................................................2311.00110
....................................................................................................................................................................................................................................................................................................................................CGGGCGAA----------CAACAACATC...........................................................................................................1811.00110
..................................................................................................................................................................................................................CA--CGCAGCCGGGGTAGTATCAACATCA............................................................................................................................................................................................................................2711.00110
......................................................................................................................................................................................................................CGCAGCCGGGGTAGTATC...................................................................................................................................................................................................................................1811.00110
..............................................................................................................................................................................A-----C------------------------AACAACA--CGCAGCCGGGGT.........................................................................................................................................................................................................................................2111.00110
..................................................................................................................................................................................................................................................................................................................AGAAGA---------T--CGGGCGAA----------CAACAACA.............................................................................................................2311.00110
.................................................................................................................................................................................................................ACA--CGCAGCCGGGGTAGT......................................................................................................................................................................................................................................1811.00110
......................................................................................................................................................................................................................................................GAAACGCGACAACAACAGCA-ACA.............................................................................................................................................................................................2311.00110
..............................................................................................................................................................................................................ACAACA--CGCAGCCGGGGTAGTATC...................................................................................................................................................................................................................................2411.00101
............................................................................................................................................................................AAA-----C------------------------AACAACA--CGCAGCCGGGGTA........................................................................................................................................................................................................................................2411.00110
.......................................................................................................................................................................................................................................................AAACGCGACAACAACAGC..................................................................................................................................................................................................1820.50110
.........................................................................................................................................................................................................................................................................A-ACAA---------------CA---A---------C---AAGAAGA---------T--C......................................................................................................................................1830.33110

Generated: 05/18/2015 at 09:55 AM