ID:

dsi_20052

 Coordinate:

x:11088712-11088996 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.3 -40.3 -40.3

Flybase annnotation

exon [x_11088997_11089368_-]; CDS [x_11088997_11089111_-]; exon [x_11088527_11088711_-]; CDS [x_11088527_11088711_-]; intron [x_11088712_11088996_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAGGGTCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAACGATCACTTGGTCTTTAGTTTAAAGGATATAGAAAACGTACCACATCGTACCACTTTATCCCAACGTAAATATCGTACATACCCTGTATCCCCTTTCAATCATGATTGAGTTCTGAAGAAGGAAGGTATGCTTTCAATTTGGATTCTTGTGACAAACAGATTCCAGCAGTGCCATTTTGGTGTATTCCTATTTGCACTATCACTTACCACCGATACGCCTTATTTGATCTCTTGCCGCTGTGCGTCTCCTCATCATGCATCTTCAATTTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAG
********************************************************..............((((............((((((((.....((((.......(((..............)))......)))).....))))))))(((((...(((.((......))))).)))))..((((((((........(((.(((.((.....))))).))))))).))))....(((((((........)))))))......))))..**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 O002
Head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
.........................................................................................................................................................................................AGGAATGCTTTCAACTTGGAA................................................................................................................................................................................... 21 3 6 45.83 275 274 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................GAGGAATGCTTTCAACTTGGA.................................................................................................................................................................................... 21 3 2 41.00 82 82 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGGAATGCTTTCAACTTGGA.................................................................................................................................................................................... 20 2 1 11.00 11 11 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGGAATGCTTTCAACTTGGAAT.................................................................................................................................................................................. 22 3 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0
.......CACGAAATCGTCGCCCTGGCC..................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 4.00 4 0 3 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................GACGGTCGGCCACATGGGC...... 19 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................TCATGTACCAGACGGTCGGCC.............. 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
........................................................CCACAACGATCACTTGGTCTT.................................................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 0 1 0 2 0 0 0 0 0 0 0
......................................................GTCCACAACGATCACTTGGTC...................................................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0
.....GTCACGAAATCGTCGCCC.......................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGGAATGCTTTCAACTTGGAT................................................................................................................................................................................... 21 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.....GTCACGAAATCGTCGCCCTGG....................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TTTGCACTATCACTTACCACC................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................TGGACAGCTTCATGTACCAGACGGTCGGC............... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GATTGAGTTCTGAAGAAGGAA....................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...GGGTCACGAAATCGTCGCC........................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................CATGTACCAGACGGTCGGCCA............. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................GTAAATATCGTACATACCCTG............................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......TCACGAAATCGTCGCCCT......................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TTTGCACTATCACTTACCAC................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................CTTATTTGATCTCTTGCCT...................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................AAACGTACCACATCGTACCAC............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CAATTTGGATTCTTGTGACA......................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TCAATCATGATTGAATTCTGA............................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................AGCTTCATGTACCAGACGGTC.................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TTGCCGCTGTGCGTCTCCTCA....................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................CCAAGGACAGAGTTGAGTC........................................................................................................................................................................................................................................................................................................................................ 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................TTATGTACCAGACCGTTGGCC.............. 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................TGATCTCTTGCCGCTGTGCGT.............................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............AATCGTCGCCCTGGCCAATCTGCAT............................................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................TAAAGGATATAGAAAACGTACC......................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................CCTTATTTGATCTCTTGCCGC..................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................ATATCGTACATACCCTGTATC......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................ATGTACCAGACGGTCGGCCAC............ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AGGGATGCTTTCAACTTGGAA................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......TCACGAAATCGTCGCCCTGGC...................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................AGACGGTCGGCCACATGGGCA..... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................ATCTTCAATTTCCAGACGAAC............................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................CTTATTTGATCTCTTGCCGCT.................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AAATATCGTACATACCCTGTA........................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................AGACGAACTGGACAGCTTCAT............................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................CTTTAGTTTAGAGGATATAGA.................................................................................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................GAGACGAACTGGACAGCTTC................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................ATAGAAAACGTACCACATCG................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................TTCATGTACCAGACGGTCGGCCACA........... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................TCACTTACCACCGATACGCCT....................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATCCCCTTTCAATCATGATTG....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......CACGAAATCGTCGCCCTGGC...................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................TCCACAACGATCACTTGGTCTT.................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TCACTTACCACCGATACGCCC....................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................ATAGAAAACGTACCACATCGT.................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GTGCGTCTCCTCATCATGCATC.............................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......CACGAAATCGTCGCC........................................................................................................................................................................................................................................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................AAGGAATGCTTTCAACTTGGA.................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....GGTCACGAAATCGTCGCCCT......................................................................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................CCAGACGGTCGGCCACATGGGC...... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................CAGAGACGAACTGGACAGCTTCATGT............................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............ATCGTCGCCCTGGCCAATCTG............................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................TATTCCTATTTGCACTATC.......................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................TTTGGATTCTTGTGACAAACA..................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCATGCATCTTCAATTTCCAG.................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......CACGAAATCGTCGCCGTGGCC..................................................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................AACTGGACAGCTTCATGTACC.......................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................CTTCAATTTCCAGACGAACTG.......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................TGGCCAATCTGCATCCCAAGGACAGAGA.............................................................................................................................................................................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........GAAATCGTCGCCCTGGCCAATCT................................................................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................ACAGATTCCAGCAGTGCCATT................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TTATCTCTTGCCGCTG................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................CAGAGACGAACTGGACAGCTT.................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................GAGGAATGCTTTCAACTTGGAT................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGAATGCTTTCAACTTGGAAT.................................................................................................................................................................................. 21 3 9 0.33 3 3 0 0 0 0 0 0 0 0 0 0
.................................................................TCACTTGGTCCATCGTTTAA............................................................................................................................................................................................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................AGGAATGCTTTCAACTTGG..................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGAATGCTTTCAACTTGGA.................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
.GAGGGTCACGAGGTCGTCGT............................................................................................................................................................................................................................................................................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................TGGATTCTTGTTCCAAAGAG.................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................................................................................................................................................................................................................CCCGATGAACCGGACAGCT................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................GAATGCTTTCAACTTGGA.................................................................................................................................................................................... 18 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCTCCCAGTGCTTTAGCAGCGGGACCGGTTAGACGTAGGGTTCCTGTCTCCACTCAGGTGTTGCTAGTGAACCAGAAATCAAATTTCCTATATCTTTTGCATGGTGTAGCATGGTGAAATAGGGTTGCATTTATAGCATGTATGGGACATAGGGGAAAGTTAGTACTAACTCAAGACTTCTTCCTTCCATACGAAAGTTAAACCTAAGAACACTGTTTGTCTAAGGTCGTCACGGTAAAACCACATAAGGATAAACGTGATAGTGAATGGTGGCTATGCGGAATAAACTAGAGAACGGCGACACGCAGAGGAGTAGTACGTAGAAGTTAAAGGTCTGCTTGACCTGTCGAAGTACATGGTCTGCCAGCCGGTGTACCCGTAGCTC
****************************************************************************************************************..............((((............((((((((.....((((.......(((..............)))......)))).....))))))))(((((...(((.((......))))).)))))..((((((((........(((.(((.((.....))))).))))))).))))....(((((((........)))))))......))))..******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.....................................................TCAGGTGTTGCTAGTGAACCA....................................................................................................................................................................................................................................................................................................................... 21 0 1 11.00 11 10 0 0 0 1 0 0 0 0 0 0
.....................................................CCAGGTGTTGCTAGTGAACCA....................................................................................................................................................................................................................................................................................................................... 21 1 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTGTCTAAGGTCGTCACGGTA.................................................................................................................................................... 21 0 1 4.00 4 3 0 0 0 1 0 0 0 0 0 0
................CAGCGGGACCGGTTAGACGTA............................................................................................................................................................................................................................................................................................................................................................ 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTCTAAGGTCGTCACGGTAA................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CCTGTCGAAGTACATGGTCTG...................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...................................................ACTCAGGTGTTGCTAGTGAAT......................................................................................................................................................................................................................................................................................................................... 21 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCCTTACGAAAGTTGAACCT.................................................................................................................................................................................... 20 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
..............................................................................................................ATGGTGAAATAGGGTTGCATT.............................................................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................GGTACATGGTCTGCCAGCCG............... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTGTCTAAGGTCGTCACGGT..................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTCACGGTAAAACCACATAAG........................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CTAACTCAAGACTTCTTCCTT....................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TGCGGAATAAACTAGAGAACG........................................................................................ 21 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................ATGCGGAATAAACTAGAGAAC......................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTAAGAACACTGTTTGTCTAAGG............................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTCTAAGGTGGTCACGGTAA................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTATGCGGAATAAACTAGAGAAC......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................CCCTGTCTCCACTCAGGTGTT................................................................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................AGTACATGGTCTGCCAGCCGGT............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATGGTGTAGCATGGTGAA........................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................AATCAAATTTCCTATATCTTT................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTCTAAGGTCGTCACGGTA.................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................CGGTCTGCCAGCCGGTGTAC......... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TATGCGGAATAAACTAGAGAAC......................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCCATACGAAAGTTAAACCTA................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................CTTTTGCATGGTGTAGCATGGT.............................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................GGACATAGGGGAAAGTTAGTA............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................TGGTCTGCCAGCCGGTGTAC......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTGTCTAAGGTCGTCACGGTA.................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CTCAAGACTTCTTCCTTCCAT................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................CATGGTCTGCCAGCCGGTGTA.......... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................CATGCGGAATAAACTAGAGAA.......................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CCTGTCGAAGTACATGGTCTGCCAGC................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................CCTGTCTCCACTCAGGTGTTG.................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTCTAAGGTCGTCACGGTAAA.................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................TATCTTTTGCATGGTGTAGCA.................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TATGCGGAATAAACTAGAGAA.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGTCTAAGGTCGTCACGGTAA................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................GCATGGTGTAGCATGGTGAAATA........................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGGTGAAATAGGGTTGCATT.............................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................ACTCAGGTGTTGCTAGTGAGT......................................................................................................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................GGTCTGCCAGCCGGTGTACCC....... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AGGATAAACGTGATAGTGAAT..................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................CTGTCGAAGTACATGGTCTGC..................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................TGACCTGTCGAAGTACATGGT......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................GTCTCCACTCAGGTGTTGCT................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................GTCGAAGTACATGGTCTGCC.................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................................................ACTCAGGTGTTGCTAGTGAATC........................................................................................................................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................TGCTTGACCTGTCGAAGTACA............................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................TTGCATGGTGTAGCATGGTGA............................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................AGTACATGGTCTGCCAGCCG............... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TAGGGTTGCATTTATAGCAT...................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGTCTAAGGTCGTCACGGTAA................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAAACCTAAGAACACTGTT........................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CCTAAGAACACTGTTTGTCTA.................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................AGGGGAAAGTTAGTACTAACT...................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................CAGGTGTTGCTAGTGAATCA....................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GTTCGTTTAAGGTGGTCACGGTAA................................................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................CCTATATCTTTTGCATGG......................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TAAGGTTGTCACGGTAAAAC................................................................................................................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................ATCAAATTTCCTATATCTTT................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................GTAGCATGGTGAAATAGGGTT................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................TCTCCACACAGGTGATGCCA............................................................................................................................................................................................................................................................................................................................... 20 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................TGGTCTGCCAGCCGGTGTACC........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CCTGTCGAAGTACATGGTCT....................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................TGACCTGTCGAAGTACATG........................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................TACATGGTCTGCCAGCCGGTG............ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....CCAGTGCTTTAGCAGCGGGAC........................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGTTGCATTTATAGCATG..................................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................AGCGGGACCGGTTAGACGTAG........................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................CAGAAATCAAATTTCCTA....................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TAGGGGAAAGTAAGAACTAA........................................................................................................................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCGTCTAAGGTGGTAACGGTAA................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................AGTAGTACCTAGAAG........................................................... 15 1 9 0.33 3 0 0 0 0 0 3 0 0 0 0 0
....................................................................................................................................................ATAGGAGAAAGTTAG.............................................................................................................................................................................................................................. 15 1 8 0.25 2 0 0 0 0 0 2 0 0 0 0 0
..............................................................................................................................................................................................................................AAGGTTGTCACGGTAAAACT............................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
.............................................GTCTCCACGCAGGTG..................................................................................................................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................ATAGGGAATGGTGGCT.............................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................GGTGGTTATGCGGAA...................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TAAACTCGAAAACGGCGA.................................................................................... 18 2 18 0.17 3 0 0 0 2 1 0 0 0 0 0 0
.........................................................................................................................GGCTGGCATTTATCGCATG..................................................................................................................................................................................................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................AGAAAACTGCTTGTCTACGG............................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................GGTCGCGGTAAAACCATAT........................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0
......................................................................................................GGTTTAGCAAGGTGAAAT......................................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
...............................................CTCCACACAGGTGATGC................................................................................................................................................................................................................................................................................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................................................CGTCGAAGTTAGAGGTCT................................................. 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................AAGCCTAAGAACACTGTTGT...................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................AAGGATAAACGCGTTAGT......................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................GGTACAGCAAGGTGAAATA........................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................AGGGGAAAGTTAATA............................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................AAATCTTTTGCATGGTC....................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................AGATAGGAGAAAGTTAG.............................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11088662-11089046 - dsi_20052 CGAGGGTCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAACGATCACTTGGTCTT-------------------TAGTTTAAAGGATATAGAAAACG--TACCA--CATCGTACCACTTTATCCCAACGTAAATATCGTACATACCCTGTATCCCCTTTCAA-TCATGATTGAGTTCTGA-AGAAGGA----------------AG----------GTATGCTTTCAATTTGGATTCTTGTGACAAACAGATTCCAGCAGTGCC-ATTTT-GGT-------------------------GTATTCC---------------TATTTGCACTATCACTTACCA-CCGATACGCCTT------------ATTTGATCTCTTGCCGC-TG------TGC---GTCTCCTCATC---AT-------------------------GC-ATC---TTCAATTTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAG
droSec2 scaffold_36:382631-382864 - dse_1247 CGAGGGTCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAACGATCACTTAGTCTT-------------------TAGTTTAAAGGATATAGAAAACG--TACCA--CATCT----CCTTTATCCCAACGTAAATATCGTACATACCCTGTATCCCCTTTCAA-TCACGATTGAATTCTGA-AGAAGGAAG--------------------------ATATGCTTTCAATTTGGATTTCCCGGCGATGC--ATTCCAACAGTGCC-ATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:11708865-11709252 - CGAGGGCCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAACGATCACTTAGTCTT-------------------TAGCTTAAAGGATATAGAAAACG--TACCA--CATCT----CCTTTGTCCCACCAT-----------------------------GATTTCATGACTGAATTCTGAAAGAAGGATCACATTAATGTTGATAGGCACATATGTATATGCTTTCAATTTGGATTCTTCTGACAAACA------GACAGTGCC-ATTTT-ATTGGCACACACGATA---------TTGGTATTCC---------------TATTTGCACTATCATTTACCA-CCATTACGCCTT------------ATTTGATCTCTCGCCGC-TG------TGC---CTCTT--CATC---AT-------------------------GC-ATC---TTCAATTTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAG
droEre2 scaffold_4690:3490857-3491270 + CGAGGGCCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAAAGACCACTTAGCCGTAGTTTTCGGCGATCATAACAAGCCCAATGGATATAGAAGTCTTTAACCACCCATCA----CGTTTTTCACGTCGATCATAT----------TTGTTTACA-ATTCAT-GCATGATTTAATTCTGA-AGAAGAATCATA--AATGCTGATAGG--------TGTATGCTTTCCATTTAGATTTTTGTGACAAGCAGATTC-GACAGTGCT-ATTTTGAATGGCAC--ACAGCA---------TTGGTACTCC---------------TATTTGCAATATCATTTAACA-CCGATACGCCTT------------ATTTGATCTCTTGCCGC-TG------TGC---CT-------------------------------------CTGA-ATC---TCTACTTTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAG
droYak3 X:14989459-14989829 + dya_1429 CGAGGGTCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAGCAATCACTTAGCCATAGTCTTCGGCGATCATATCAAGCTTAAAGGATATAGAAAACT--AAACA--CATCT----CGTTTTTCCC-------CCAT----------TTGTATACC-ATTGATTAC-------GATTCTGA-AGAAGGATCATA--AATGTTGATAGC--------TGTATGCTTTCAATTTAGTTGTTTGTCACAAG-----------------------------CAC--ACAACA---------TTGGTATTCC---------------TATTTGCAATATCATTTATCA-GCGATACGCCTT------------ATTTGATCTCTTGTCGCATG------TGC---CT-------------------------------------CCGA-ATC---TCTACATTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAG
droEug1 scf7180000409181:48325-48458 - TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAT---------------TATTTGCAAAATCATTTACCA-TCGATTTGCCTT-----------TGTTTGATCTCTAGCCGC-TG------T-----CT-------------------------------------CAAAAATT---GTTACTTTCCAGACGAACTGGACAGCTTTATGTACCAGACGGTCGGCCACATGGGCATCGAG
droBia1 scf7180000298389:1512701-1512842 - TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC---------------TATTTGCGAAATCATTTACCA-CCGATTCGCGCTGTAGCCGCAGCCATTTGATCTCCCGCCGC-TG------A-----CT-------------------------------------CCGC-ATT---GTTACTTTCCAGACGAACTGGACAGCTTTATGTACCAGACGGTCGGCCACATGGGCATCGAG
droTak1 scf7180000414375:173784-173954 + TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAT--ACTTTG---------TTAGTATTAC---------------TATTTGCGCAATCATTTACCAACCGATTCGC---------GCTGCCATTTGATCTCTTGCCGC-TG------TTCCAAGTCTC--CAGTCTCTA---GTAT----------------CTAA-ATT---GTTACTTTCCAGACGAACTGGACAGCTTTATGTACCAGACGGTCGGCCACATGGGCATCGAG
droEle1 scf7180000491023:452949-453151 + AAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTTTGAGGTAGACAAATTC-GACAGTGCCCATATT-AAGGCCAT--GGATTA---------TTGGTATTAT---------------TATTTGCGCAATCATTTACCA-CCGATTCGCCGTGTACCCGCAGCCATTTGATCTCTTGCCGC-TG------T-----CT-------------------------------------CTAA-ATT---GTTACATTCCAGACGAGCTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAG
droRho1 scf7180000777255:45432-45631 - TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTTGAGGTAGGCTGGTTG-GACAGTGCT-ATATT-AATGCCAT--AGATTA---------TTGGCATTAT---------------TATTTGCACAATCATTTACCA-CCGATTCGCCTTGTATCCACAGCCATTTGATTTCTTGCCGC-TG------T-----CT-------------------------------------CTAA-ATT---AATACTTTCCAGACGAACTGGACAGCTTTATGTACCAGACCGTCGGCCACATGGGCATCGAG
droFic1 scf7180000453277:175641-175845 - TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAGGTAGGCAAGTTC-CACAGTGTT-AGATT-GATGCCAT--GGATCAGATTA--GATGGTCAATAT---------------TATTTGCGAAATCACTTACCA-CCGATTCGCCTTGTACCCGCTGCCATTTGATCTGAGGCCGC-AA------TGC---CG-------------------------------------CCCA-ATTGTTGTTACCTTCCAGACGAACTGGACAGCTTTATGTACCAGACGGTCGGCCACATGGGCATCGAG
droKik1 scf7180000302544:539578-539738 - C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGCTTTAGCATTTAGCA-CCAAGTTGCC--------GCTGT-TTTTGATCTCTAGCCGC-TGTAGTTGCTC----------CACC---TTGTGCTCTTTACCTGCTCACATTTTT---GTG---CTCTACTTGCAGACGAGCTGGATAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAA
droAna3 scaffold_13417:1489657-1489721 - A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---TACCGCTTTCAGATGAACTGGACAGCTTCATGTACCAGACAGTCGGCCACATGGGCATCGAG
droBip1 scf7180000396006:8250-8496 - CGAGGGCCACGAGATTGTTGCCTTGGCCAATCTCCATCCCAAGGATAGAGGTGAGTACCGAA------------------------------------------------------------ACTA--GAACT----CTTCTATCTTCCCAT-----------------------------CATTATA--------------------------------------------------------------------------AGGTGGGT-----------G-------------TGCCAT--AATT------ATCGATGGTTATTATTATTATTGAAGACGTTGTTTGCCAAATCACTTACCA-CCA---CACTTA------------CCTTCATCTATCGCCGT---------------------------------------------------------------------CATTTCAGATGAACTGGACAGCTTTATGTACCAGACAGTGGGCCACATGGGCATCGAG
dp5 XL_group1e:3918393-3918536 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTGCAATCATTTACCA-TGGAACAAGCC---------CGC-AACTGATTATTGACTGA-TACCACTGCTCCCACTATC--TACTCTC----------------------------C-TTC---TCCCTCTCCCAGATGAACTGGACAGCTTCATGTACCAGACAGTGGGCCACATGGGCATCGAG
droPer2 scaffold_17:854357-854501 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTGCAATCATTTACCA-TGGAACAAGC--------CCCGC-AACTGATTATTGACTGA-TACCACTGCTCCCACTATC--TACTCTC----------------------------C-TTC---TCCCTCTCCCAGATGAGCTGGACAGCTTCATGTACCAGACAGTGGGCCACATGGGCATCGAG
droWil2 scf2_1100000004963:3669667-3669741 + TTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TATTTTC----------------------------C-------ATTTCCCTCTAGATGAACTGGACAGCTTTATGTATCAAACTGTTGGCCATATGGGCATTGAA
droVir3 scaffold_12928:1569557-1569618 + CGAGGGTCACGAAATTGTCGCCCTAGCCAATTTGCATCCCAAGGACAGAGGTGAAACCTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:13447688-13447741 - CGAGGGTCACGAAATTGTCGCACTTGCCAATTTGCATCCCAAGGATAGAGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:8206128-8206189 - CGAGGGCCACGAAATTGTCGCATTAGCCAACTTGCATCCCAAGGACAGAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAACAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGAGGGTCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAACGATCACTTGGTCTT-------------------TAGTTTAAAGGATATAGAAAACG--TACCA--CATCGTACCACTTTATCCCAACGTAAATATCGTACATACCCTGTATCCCCTTTCAA-TCATGATTGAGTTCTGA-AGAAGGA----------------AG----------GTATGCTTTCAATTTGGATTCTTGTGACAAACAGATTCCAGCAGTGCC-ATTTT-GGT-------------------------GTATTCC---------------TATTTGCACTATCACTTACCA-CCGATACGCCTT------------ATTTGATCTCTTGCCGC-TG------TGC---GTCTCCTCATC---AT-------------------------GC-ATC---TTCAATTTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......CACGAAATCGTCGCCCTGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.00431000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCGGCCACATGGGC......1914.00440000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTACCAGACGGTCGGCC..............2113.00330000000000000000
........................................................CCACAACGATCACTTGGTCTT-------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00312000000000000000
......................................................GTCCACAACGATCACTTGGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00321000000000000000
.....GTCACGAAATCGTCGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00330000000000000000
.....GTCACGAAATCGTCGCCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00330000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TTTGCACTATCACTTACCA-CC......................................................................................................................................................................2112.00220000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAGCTTCATGTACCAGACGGTCGGC...............2912.00200000002000000000
.............................................................................................................................................................................................GATTGAGTTCTGA-AGAAGGA----------------A..................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
...GGGTCACGAAATCGTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACCAGACGGTCGGCCA.............2112.00220000000000000000
......................................................................................................................................................GTAAATATCGTACATACCCTG..........................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
......TCACGAAATCGTCGCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
.........................................................................................................................................................................................................................................................................................................................................................TTTGCACTATCACTTACCA-C.......................................................................................................................................................................2011.00100000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................CTT------------ATTTGATCTCTTGCCT................................................................................................................................1911.00110000000000000000
..................................................................................................................AAACG--TACCA--CATCGTACCAC..........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
.......................................................................................................................................................................................................................................................CAATTTGGATTCTTGTGACA..........................................................................................................................................................................................................................................................................2011.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCATGTACCAGACGGTC..................2111.00100000100000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGC-TG------TGC---GTCTCCTCA.......................................................................................................2111.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TGATCTCTTGCCGC-TG------TGC---GT..............................................................................................................2111.00100010000000000000
............AATCGTCGCCCTGGCCAATCTGCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.....................................................................................................TAAAGGATATAGAAAACG--TACC........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CCTT------------ATTTGATCTCTTGCCGC-..............................................................................................................................2111.00110000000000000000
..........................................................................................................................................................ATATCGTACATACCCTGTATC......................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACCAGACGGTCGGCCAC............2111.00110000000000000000
......TCACGAAATCGTCGCCCTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGTCGGCCACATGGGCA.....2111.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---TTCAATTTCCAGACGAAC............................................2111.00100000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................CTT------------ATTTGATCTCTTGCCGC-T.............................................................................................................................2111.00110000000000000000
........................................................................................................................................................AAATATCGTACATACCCTGTA........................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGAACTGGACAGCTTCAT...............................2111.00100000100000000000
.............................................................................................................ATAGAAAACG--TACCA--CATCG................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGTACCAGACGGTCGGCCACA...........2511.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................TCACTTACCA-CCGATACGCCT.............................................................................................................................................................2111.00110000000000000000
............................................................................................................................................................................ATCCCCTTTCAA-TCATGATTG...................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.......CACGAAATCGTCGCCCTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.......................................................TCCACAACGATCACTTGGTCTT-------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TCACTTACCA-CCGATACGCCC.............................................................................................................................................................2111.00110000000000000000
.............................................................................................................ATAGAAAACG--TACCA--CATCGT...............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................G------TGC---GTCTCCTCATC---AT-------------------------GC-ATC---..............................................................2211.00100000100000000000
.......CACGAAATCGTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
....GGTCACGAAATCGTCGCCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACGGTCGGCCACATGGGC......2211.00110000000000000000
.............ATCGTCGCCCTGGCCAATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................TATTCC---------------TATTTGCACTATC.................................................................................................................................................................................1911.00100001000000000000
..........................................................................................................................................................................................................................................................TTTGGATTCTTGTGACAAACA......................................................................................................................................................................................................................................................................2111.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TC---AT-------------------------GC-ATC---TTCAATTTCCAG..................................................2111.00100000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGACAGCTTCATGTACC..........................2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTCAATTTCCAGACGAACTG..........................................2111.00110000000000000000
.......................TGGCCAATCTGCATCCCAAGGACAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..........GAAATCGTCGCCCTGGCCAATCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
............................................................................................................................................................................................................................................................................ACAGATTCCAGCAGTGCC-ATT...................................................................................................................................................................................................................................................2111.00100010000000000000
droSec2
CGAGGGTCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAACGATCACTTAGTCTT-------------------TAGTTTAAAGGATATAGAAAACG--TACCA--CATCT----CCTTTATCCCAACGTAAATATCGTACATACCCTGTATCCCCTTTCAA-TCACGATTGAATTCTGA-AGAAGGAAG--------------------------ATATGCTTTCAATTTGGATTTCCCGGCGATGC--ATTCCAACAGTGCC-ATTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................ACAGAGGTGAGTCCACAACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021001
.....................................................................................................TAAAGGATATAGAAAACG--TAC.........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200
.......CACGAAATCGTCGCCCTGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0022000
.............................................................................................................................................................................................GATTGAATTCTGA-AGAAGGA...................................................................................................................................................................................................................................................................................................................................2011.0010001
.......CACGAAATCGTCGCCCTGGCCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
..............................TCTGCATCCCAAGGACAGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.......................................................................................................................................................................................................TGA-AGAAGGAAG--------------------------ATATGCTTT..............................................................................................................................................................................................................................................................................................2111.0010100
.............................................................................................................ATAGAAAACG--TACCA--CATCT----C...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...............................CTGCATCCCAAGGACAGAGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.............ATCGTCGCCCTGGCCAATCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
..........................................................ACAACGATCACTTAGTCTT-------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
................................................................................................................GAAAACG--TACCA--CATCT----CCTT........................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.....GTCACGAAATCGTCGCCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
......................................................................................................................................................................................................CTGA-AGAAGGAAG--------------------------ATATGCTT...............................................................................................................................................................................................................................................................................................2111.0010001
........................................................CCACAACGATCACTTAGTCTT-------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..........................CCAATCTGCATCCCAAGGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
....................................TCCCAAGGACAGAGGTGAGTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.............................................................................................................................A--CATCT----CCTTTATCCCAACGT.............................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
............AATCGTCGCCCTGGCCAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
...........................CAATCTGCATCCCAAGGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
......TCACGAAATCGTCGCCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
..........GAAATCGTCGCCCTGGCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...................................................................................................TTTAAAGGATATAGAAAACG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...........................................................CAACGATCACTTAGTCTT-------------------TAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
............AATCGTCGCCCTGGCCAATCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
............................AATCTGCATCCCAAGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.................................................................................................................................ATCT----CCTTTATCCCAACGTAA...........................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
dm3
CGAGGGCCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAACGATCACTTAGTCTT-------------------TAGCTTAAAGGATATAGAAAACG--TACCA--CATCT----CCTTTGTCCCACCAT-----------------------------GATTTCATGACTGAATTCTGAAAGAAGGATCACATTAATGTTGATAGGCACATATGTATATGCTTTCAATTTGGATTCTTCTGACAAACA------GACAGTGCC-ATTTT-ATTGGCACACACGATA---------TTGGTATTCC---------------TATTTGCACTATCATTTACCA-CCATTACGCCTT------------ATTTGATCTCTCGCCGC-TG------TGC---CTCTT--CATC---AT-------------------------GC-ATC---TTCAATTTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCATGTACCAGACGGTCGGCCACA...........2714.0040000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGACGGTCGGCCACATGGGCATC...2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACGAAATCGTCGCCCTGGCCAATCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACCAGACGGTCGGCCAC............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATGTACCAGACGGTCGGC...............2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGACAGCTTCATGTG............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCATGTACCAGACGG....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGTACCAGACGGTCGGCCA.............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCATGTACCAGACGGTCGGCC..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGTCGGCCACATGGGCA.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................ATGACTGAATTCTGAAAGAAGGAT..................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGAACTGGACAGCTTCAT...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACCAGACGGTCGGCCACATGGGCATC...2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGCATCCCAAGGACAGAGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACCAGACGGTCGGCCACATGGGCAT....2811.0010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CACGAAATCGTCGCCCTGGCCAATCTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGTCGGCCACATGGGCATC...2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................TGTTGATAGGCACATATGT.......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCATGTACCAGACGGTC..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACCAGACGGTCGGCCACATG.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGACGGTCGGCCACATGGGCATCGA.2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGACGGTCGGCCACATGGGCAT....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATCTGCATCCCAAGGACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ATCTGCATCCCAAGGACAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TATGTATATGCTTTCAATTTG.......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAGCTTCATGTACCAGACGGT...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTAAAGGATATAGAAAACG--T...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
................................TGCATCCCAAGGACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAACTGGACAGCTTC.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAACTGGACAGCTTCATGTACC..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................ACTTAGTCTT-------------------TAGCTTAAAGGATATAG....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGTCGGCCACATGGGCATCGA.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAGCTTCATGTACCAGACGGTC..................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCATGTACCAGACGGTCGGCCAC............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGACAGCTTCATGTACC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ATCCCAAGGACAGAGGTGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TGTATATGCTTTCAATTTGG......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGACAGCTTCATGTACCA.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AATCGTCGCCCTGGCCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GCCACGAAATCGTCGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAGCTTCATGTACCAGACGGT...................2511.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTTCATGTACCAGAC......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCATGTACCAGACGGTCGGC...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGAACTGGACAGCTTCA................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCATGTACCAGACGGTCGGCCAC............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGAAATCGTCGCCCTGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGTCGGCCACATGGGA......2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTGCACTATCATTTACCA-CC......................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGACGGTCGGCCACATGGGC......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGGACAGCTTCATGTACCAGACGG....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACAGCTTCATGTACCAGACGGTC..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAACTGGACAGCTTCATGTA............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGTCGGCCACATGGGCATCG..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACAGCTTCATGTACCAGACGGT...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATGTACCAGACGGTCGGCCACAT..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATGTACCAGACGGTCGG................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TGCATCCCAAGGACAGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TT-ATTGGCACACACGATA---------T......................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................TACGCCTT------------ATTTGATCTCT.....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGAGGGCCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAAAGACCACTTAGCCGTAGTTTTCGGCGATCATAACAAGCCCAATGGATATAGAAGTCTTTAACCACCCATCA----CGTTTTTCACGTCGATCATAT----------TTGTTTACA-ATTCAT-GCATGATTTAATTCTGA-AGAAGAATCATA--AATGCTGATAGG--------TGTATGCTTTCCATTTAGATTTTTGTGACAAGCAGATTC-GACAGTGCT-ATTTTGAATGGCAC--ACAGCA---------TTGGTACTCC---------------TATTTGCAATATCATTTAACA-CCGATACGCCTT------------ATTTGATCTCTTGCCGC-TG------TGC---CT-------------------------------------CTGA-ATC---TCTACTTTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGACGGTCGGCCACATGGGC......2511.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTCGGCCACATGGGCAT....2111.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................TTGATCTCTTGCCGC-TG------TGC---................................................................................................................2011.0011000000
.......CACGAAATCGTCGCCCTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTTCATGTACCAGACGGTC..................2411.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACCAGACGGTCGGCCACATGG........2411.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGACGGTCGGCCACATG.........2211.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAACTGGACAGCTTCATG..............................2111.0010000010
.......CACGAAATCGTCGCCCTGGCCAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
....GGCCACGAAATCGTCGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2011000000
droYak3
CGAGGGTCACGAAATCGTCGCCCTGGCCAATCTGCATCCCAAGGACAGAGGTGAGTCCACAGCAATCACTTAGCCATAGTCTTCGGCGATCATATCAAGCTTAAAGGATATAGAAAACT--AAACA--CATCT----CGTTTTTCCC-------CCAT----------TTGTATACC-ATTGATTAC-------GATTCTGA-AGAAGGATCATA--AATGTTGATAGC--------TGTATGCTTTCAATTTAGTTGTTTGTCACAAG-----------------------------CAC--ACAACA---------TTGGTATTCC---------------TATTTGCAATATCATTTATCA-GCGATACGCCTT------------ATTTGATCTCTTGTCGCATG------TGC---CT-------------------------------------CCGA-ATC---TCTACATTCCAGACGAACTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTGTCGCATG------TGC---CT-------------------------------------CC.......................................................................2114.00422000000000
......TCACGAAATCGTCGCCCTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000
.......CACGAAATCGTCGCCCTGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCGCATG------TGC---CT-------------------------------------CCGA-A...................................................................2111.00101000000000
.....................................................................................................................CT--AAACA--CATCT----CGTTTTTCC...................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
....................................................................................................................................................................................TGATTAC-------GATTCTGA-AGAAGG....................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................CATTTATCA-GCGATACGCCTT------------................................................................................................................................................2111.00101000000000
.....GTCACGAAATCGTCGCCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
................................................................................................................................................................................................................................................................................................................................................................................ATACGCCTT------------ATTTGATCTCTT....................................................................................................................................2111.00101000000000
...................GCCCTGGCCAATCTGCATCCCAAGGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCATGTACCAGACGGTCGG................2111.00101000000000
...............................................................................................................................................................................CC-ATTGATTAC-------GATTCTGA-AGA.......................................................................................................................................................................................................................................................................................................................................2211.00110000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAGACGGTCGGCCACATGGGC......2511.00100000010000
droEug1
TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAT---------------TATTTGCAAAATCATTTACCA-TCGATTTGCCTT-----------TGTTTGATCTCTAGCCGC-TG------T-----CT-------------------------------------CAAAAATT---GTTACTTTCCAGACGAACTGGACAGCTTTATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotal
No Reads
droBia1
TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAC---------------TATTTGCGAAATCATTTACCA-CCGATTCGCGCTGTAGCCGCAGCCATTTGATCTCCCGCCGC-TG------A-----CT-------------------------------------CCGC-ATT---GTTACTTTCCAGACGAACTGGACAGCTTTATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotal
No Reads
droTak1
TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAT--ACTTTG---------TTAGTATTAC---------------TATTTGCGCAATCATTTACCAACCGATTCGC---------GCTGCCATTTGATCTCTTGCCGC-TG------TTCCAAGTCTC--CAGTCTCTA---GTAT----------------CTAA-ATT---GTTACTTTCCAGACGAACTGGACAGCTTTATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotal
No Reads
droEle1
AAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAATTTTGAGGTAGACAAATTC-GACAGTGCCCATATT-AAGGCCAT--GGATTA---------TTGGTATTAT---------------TATTTGCGCAATCATTTACCA-CCGATTCGCCGTGTACCCGCAGCCATTTGATCTCTTGCCGC-TG------T-----CT-------------------------------------CTAA-ATT---GTTACATTCCAGACGAGCTGGACAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotal
No Reads
droRho1
TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTTTTGAGGTAGGCTGGTTG-GACAGTGCT-ATATT-AATGCCAT--AGATTA---------TTGGCATTAT---------------TATTTGCACAATCATTTACCA-CCGATTCGCCTTGTATCCACAGCCATTTGATTTCTTGCCGC-TG------T-----CT-------------------------------------CTAA-ATT---AATACTTTCCAGACGAACTGGACAGCTTTATGTACCAGACCGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotal
No Reads
droFic1
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAGGTAGGCAAGTTC-CACAGTGTT-AGATT-GATGCCAT--GGATCAGATTA--GATGGTCAATAT---------------TATTTGCGAAATCACTTACCA-CCGATTCGCCTTGTACCCGCTGCCATTTGATCTGAGGCCGC-AA------TGC---CG-------------------------------------CCCA-ATTGTTGTTACCTTCCAGACGAACTGGACAGCTTTATGTACCAGACGGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotal
No Reads
droKik1
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTGCTTTAGCATTTAGCA-CCAAGTTGCC--------GCTGT-TTTTGATCTCTAGCCGC-TGTAGTTGCTC----------CACC---TTGTGCTCTTTACCTGCTCACATTTTT---GTG---CTCTACTTGCAGACGAGCTGGATAGCTTCATGTACCAGACGGTCGGCCACATGGGCATCGAASizeHit CountTotal NormTotal
No Reads
droAna3
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---TACCGCTTTCAGATGAACTGGACAGCTTCATGTACCAGACAGTCGGCCACATGGGCATCGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCATGTACCAGACAGT...................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTTCATGTACCAGACAGTCGGCC..............2711.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTCGGCCACATGGGCATC...2211.001010000
droBip1
CGAGGGCCACGAGATTGTTGCCTTGGCCAATCTCCATCCCAAGGATAGAGGTGAGTACCGAA------------------------------------------------------------ACTA--GAACT----CTTCTATCTTCCCAT-----------------------------CATTATA--------------------------------------------------------------------------AGGTGGGT-----------G-------------TGCCAT--AATT------ATCGATGGTTATTATTATTATTGAAGACGTTGTTTGCCAAATCACTTACCA-CCA---CACTTA------------CCTTCATCTATCGCCGT---------------------------------------------------------------------CATTTCAGATGAACTGGACAGCTTTATGTACCAGACAGTGGGCCACATGGGCATCGAGSizeHit CountTotal NormTotal
No Reads
dp5
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTGCAATCATTTACCA-TGGAACAAGCC---------CGC-AACTGATTATTGACTGA-TACCACTGCTCCCACTATC--TACTCTC----------------------------C-TTC---TCCCTCTCCCAGATGAACTGGACAGCTTCATGTACCAGACAGTGGGCCACATGGGCATCGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGTACCAGACAGTGGGCC..............2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTTCATGTACCAGACA.....................2111.0010100000000
droPer2
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTGTGCAATCATTTACCA-TGGAACAAGC--------CCCGC-AACTGATTATTGACTGA-TACCACTGCTCCCACTATC--TACTCTC----------------------------C-TTC---TCCCTCTCCCAGATGAGCTGGACAGCTTCATGTACCAGACAGTGGGCCACATGGGCATCGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGGGCCACATGGGCATCG..2111.001001000
droWil2
TTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--TATTTTC----------------------------C-------ATTTCCCTCTAGATGAACTGGACAGCTTTATGTATCAAACTGTTGGCCATATGGGCATTGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAAACTGTTGGCCATATGGGCATT...2811.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAGCTTTATGTATCAAACTGTTG.................2811.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCAAACTGTTGGCCA.............1911.00110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACAGCTTTATGTATCA.........................2011.00100010
droVir3
CGAGGGTCACGAAATTGTCGCCCTAGCCAATTTGCATCCCAAGGACAGAGGTGAAACCTTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........GAAATTGTCGCCCTAGCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CGAGGGTCACGAAATTGTCGCACTTGCCAATTTGCATCCCAAGGATAGAGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGAGGGCCACGAAATTGTCGCATTAGCCAACTTGCATCCCAAGGACAGAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:32 PM