ID:

dsi_20045

 Coordinate:

2r:4787567-4787716 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.2 -6.2 -5.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACATTTCATGCATTTTCTGATACTTTAAAATTGATTTGGAGCATCGGCAGAAGTACGAGTAAAGAGTGTCCTTGGAAAGTTTGTTAGCTTAATTCATACGACGGTAGTGAGGCATATAATAATTGAGAAATGCATGAAACTGTTCTATTGTTTGACTTTTCTTTATAATTTCTTTTGATTTTTTATGGGACAACTATTAGATGGACGGCAGGATTCATAGCTCATCCCGCCGGGTAAGTTCCTTTGTTGT
***************************************************************...((((..(((((((((....)))))..))))...))))....................******************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O001
Testis
...............................................................GAGTGTCCTTGGAAA............................................................................................................................................................................ 15 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................GAGGCATATAATAAT............................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TTAGATGGACGGCAGGATTCATAGCT............................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................TTGGAAAGTTTGTTAGCTTAA.............................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................AACTATTAGATGGACGGCAGG...................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCACCAGATGGACGGCAGGATTCATA............................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................ACTGTTCTATTGTTTGAC.............................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GACGGCAGGATTCATAGCT............................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................TGAGAAATGCATGAAGCTGTT.......................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................GAATTGATTTGGAGCATCGGC.......................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................GGAGCATCGGCAGAAGTACGA................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........TTTTTCGGATACTTTAAAA............................................................................................................................................................................................................................ 19 2 6 0.33 2 0 0 0 0 0 0 0 1 1 0
............................................................................................TTCATACGACCGTCGTGAGA.......................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................GTTCTTTGACTTTTCTTTA..................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................ATTCCTTCGGGTAAGTTCC........ 19 3 16 0.13 2 0 0 0 2 0 0 0 0 0 0
...........................AAATTGATTTGGATCGTC............................................................................................................................................................................................................. 18 2 16 0.13 2 0 0 0 2 0 0 0 0 0 0
.........................TAAACTTGACTTGTAGCATC............................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................CCGGCTAAGTTCCTT...... 15 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................ACGATGGTAGTGTGGCA........................................................................................................................................ 17 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0
...............................................................GAGTGTCCTCGGAAAGG.......................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGTAAAGTACGTAAAAGACTATGAAATTTTAACTAAACCTCGTAGCCGTCTTCATGCTCATTTCTCACAGGAACCTTTCAAACAATCGAATTAAGTATGCTGCCATCACTCCGTATATTATTAACTCTTTACGTACTTTGACAAGATAACAAACTGAAAAGAAATATTAAAGAAAACTAAAAAATACCCTGTTGATAATCTACCTGCCGTCCTAAGTATCGAGTAGGGCGGCCCATTCAAGGAAACAACA
*******************************************************************************************************************************...((((..(((((((((....)))))..))))...))))....................*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
........................................CGTAGCCGTCTTCATGCTCAT............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................ATTAAGTATGCTGCCATCACTC........................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................GTTGATAATCTACCTGCCGTC....................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................GTATGCTGCCATCACTCCGTA....................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AGGGCGGCCCATTCAAGGAAA..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................TCGAATTAAGTATGCTGCCAT................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0
....................................................................................................................ATTTATAACTCTTTACGTCCTTT............................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................TCTGCTGCCATGTCTCCGT........................................................................................................................................ 19 3 10 0.10 1 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................GGAGCGGCCCATTCAA.......... 16 2 20 0.05 1 0 0 0 0 0 0 0 1
............................................................................................CAGAATGCTGCCATCAAT............................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0

Generated: 04/23/2015 at 04:14 AM