ID:

dsi_20017

Coordinate:

3r:17572938-17573087 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-6.0	-5.3	-5.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCTGGCAGTAGTTAAAATATTTAAGCCACAACACGGCGTGGAGAAAAATGTAAGTAAGATGGAATGCTGCCGCAGGCATTAAAATAATAAGGATAAGGAAGCGGTTGTTAACCACGAAACCGCTCAAAAATGAATGAATGAATGCCGGCCAGGAGCCGGAGTTGCTTGTCCGGGCATGGAGTCGCGTGCTCCATTCTCCATGCACCATTCTCGATACTCCAGGCGAAAGCGAGTGAGTGACTCCTGAGC **************************************************...........((((((......)))))).........................**********************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.........................................................................................AAGGATAAGGAAGCGGTTGTTTT..........................................................................................................................................	23	2	1	2.00	2	2	0	0	0	0	0
.....................................................................................TAATAAGGATAAGGAAGCGGT................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0
....................................................AAGTAAGATGGAATGCTGCCG.................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0
.....GCAGTAATTAAAAAATTTAATC...............................................................................................................................................................................................................................	22	3	7	0.14	1	0	0	0	1	0	0
......................TAAGTCACATCACCGCGTG.................................................................................................................................................................................................................	19	3	8	0.13	1	0	1	0	0	0	0
.............................CTACAAGGCGTGGAGAATAAT........................................................................................................................................................................................................	21	3	10	0.10	1	0	0	1	0	0	0
.............................................................................................................................................................CGGCGTTGGTTGTCCGG............................................................................	17	2	11	0.09	1	0	0	0	0	0	1
......................................................................................................................................................................................................GCATGCACCATTCCCGA...................................	17	2	12	0.08	1	0	1	0	0	0	0
............................................................AGGAATGCTGCCGCA...............................................................................................................................................................................	15	1	13	0.08	1	0	1	0	0	0	0
..............................................................................................................................................................GAAGTTGCTTGTCAGG............................................................................	16	2	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................TGGAATCGGGTGCTCCA........................................................	17	2	20	0.05	1	0	1	0	0	0	0
...........................................................................AGCATCAAAATAATTAGGAT...........................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................AAAGGGAGTGAGAGACT.......	17	2	20	0.05	1	0	0	1	0	0	0

Anti-sense strand reads

GAGACCGTCATCAATTTTATAAATTCGGTGTTGTGCCGCACCTCTTTTTACATTCATTCTACCTTACGACGGCGTCCGTAATTTTATTATTCCTATTCCTTCGCCAACAATTGGTGCTTTGGCGAGTTTTTACTTACTTACTTACGGCCGGTCCTCGGCCTCAACGAACAGGCCCGTACCTCAGCGCACGAGGTAAGAGGTACGTGGTAAGAGCTATGAGGTCCGCTTTCGCTCACTCACTGAGGACTCG **********************************************************************************************************************************************...........((((((......)))))).........................**************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	O001 Testis	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.............................................................................................................................................................................................................................TCCGCTTTCGCTCACTCAC..........	19	0	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................ACGTGGTAAGAGCTATGAGGTCCGCTT......................	27	0	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................GGTCCTAGGCCTCAACGAGC.................................................................................	20	2	2	0.50	1	0	0	1	0	0	0
.....................................................................................................................................................................................................AGGTACGTGGTAATA......................................	15	1	14	0.14	2	0	0	0	0	1	1
................................................................................................................................................................TGAACGATCAGGCCCGTGC.......................................................................	19	3	9	0.11	1	0	0	0	1	0	0
..........................................................................................................ACAATTGGTGCCCTGG................................................................................................................................	16	2	14	0.07	1	0	0	1	0	0	0
..................................GCCGCACCGCCTTTTACA......................................................................................................................................................................................................	18	2	17	0.06	1	1	0	0	0	0	0
...................................................................................................................................................................................................AGTGGTACGTGGTAA........................................	15	1	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................CGAACACGCTCGTACCTG....................................................................	18	3	20	0.05	1	0	0	0	1	0	0

Generated: 04/23/2015 at 11:25 PM