ID:

dsi_20014

 Coordinate:

3l:15725426-15725575 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.0 -32.9 -32.7

Flybase annnotation

exon [3l_15725576_15725832_+]; five_prime_UTR [3l_15725576_15725832_+]; intron [3l_15725058_15725575_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGTGCATTCACAAATATTGCACAGTCGCCACCCGCATAAACGCGCGGCATTGCCAGATCGTTGGTTACGTGTTTTTCGCTCGCTATCTGGCAACGTCCACCACCCTCGATTTTCGCTTTACACGCGCATTCGTGAAAATGGCGGCGTTCTGGCACCGTCGCTGCCAAATTTTTTGTACATCAAAATAATCAAAATAAAGCATTCTTCCAGTGCTCAACAATCAGTCCGTGCGAGCACGCGCGTGTGTGT
**************************************************.((((((((.((.(((............))).)).))))))))(((.((.(((....(((....(((.......)))...)))......))).)))))..(((((.......)))))....(((((.....)))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................................................GCTCAACAATCAGTCCG..................... 17 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................................................................CGTTCTGGCACCGTCGCTG...................................................................................... 19 0 1 2.00 2 0 1 1 0 0 0 0
...........................................................................................................................................TGGCGGCGTTCTGGC................................................................................................ 15 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................................TCTTCCAGTGCTCAACAATCAGTCCGTG................... 28 0 1 1.00 1 0 0 0 0 1 0 0
............................................................................................................................................................................................................................ATCAGTCCGTGCGAGCAC............ 18 0 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................ATTCGTGAAAATGGCGGCG....................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................ATCAGTCCGTGCGAGCACGCGCG....... 23 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................GCTTTACACTGGCATTCGT.................................................................................................................... 19 2 4 0.50 2 0 0 0 0 0 1 1
....................CACGGTCGCCACCCG....................................................................................................................................................................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0
.......................................................ACATCGTTCGTTACGTG.................................................................................................................................................................................. 17 2 9 0.11 1 0 0 0 0 0 1 0
.................................................................................................................TAGCTTTACACTGGCATTCG..................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0
...............................................................................................................TTTCGCTTCACACGC............................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 1
.............................................................................................................................................................GTCGCTGCCAAGTTT.............................................................................. 15 1 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

ATCACGTAAGTGTTTATAACGTGTCAGCGGTGGGCGTATTTGCGCGCCGTAACGGTCTAGCAACCAATGCACAAAAAGCGAGCGATAGACCGTTGCAGGTGGTGGGAGCTAAAAGCGAAATGTGCGCGTAAGCACTTTTACCGCCGCAAGACCGTGGCAGCGACGGTTTAAAAAACATGTAGTTTTATTAGTTTTATTTCGTAAGAAGGTCACGAGTTGTTAGTCAGGCACGCTCGTGCGCGCACACACA
**************************************************.((((((((.((.(((............))).)).))))))))(((.((.(((....(((....(((.......)))...)))......))).)))))..(((((.......)))))....(((((.....)))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 M053
female body
 O001
Testis
...........ATTTATAACGTGTCAGCGGTG.......................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GGAAAGTCACGAGTTGTTGGT.......................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................TCGTAAGATGGTGACGAGTT................................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................CGCAAGACCGTGGCAGCGACG..................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................GCAGGTGTTGGTAGCTAAAAG....................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGTAGGTAGGTCACGAGATG............................... 20 3 11 0.36 4 0 0 0 0 4 0 0 0
..........................................................................................................................................................TGGCTGCGACGTTTGAAAAA............................................................................ 20 3 6 0.17 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................................CTTAAGAAGGTCACGA................................... 16 1 7 0.14 1 0 1 0 0 0 0 0 0
.......................................................................................................................................TTTTACCGGCGCTAGACTG................................................................................................ 19 3 18 0.11 2 2 0 0 0 0 0 0 0
...........................................GCGCCGTTACGGACTAGT............................................................................................................................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 1 1
...............................................................................................CAGTTGGTGGGCGGTAAAAG....................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0
................................................................................................................................TGAGCAGTTTTACCGCCG........................................................................................................ 18 2 12 0.08 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................AAAAAACAGGTTGTTTTATT............................................................. 20 2 14 0.07 1 1 0 0 0 0 0 0 0
..............................AGGGCGTATTTACGCGCAG......................................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................TTACTTAAGAAGGTCACG.................................... 18 2 16 0.06 1 0 1 0 0 0 0 0 0

Generated: 04/23/2015 at 07:06 PM