ID:

dsi_20012

 Coordinate:

node_3978:5548-5712 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.9 -3.4 -3.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
PROTOP_BDNAP+

Sense Strand Reads

AACTCTCTTCTACGCAAACAGTGACAGCCGACAACTGCATCTGTGCACACGTATGTTCATGCATGGTAAATGTGTCAAAATATGACTTTTGAATACCTTCACTTTACAAGTTTTTTAAATCTATATTCTTTTTAATCAATTGGAAACATGTCAAAAATTTTTGCTTTGCATTGCCTTATTATTTATTATTTGAAATATTAATAGACACATAGACTCGGCTATTACATAATATAAGAAAAAAATTCGAAAACGTATTCTGCTTGCG
******************************************************************.....(((((((((......))))).)))).............................******************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M053
female body
 O001
Testis
 SRR902009
testis
 M024
male body
......CTTCTACGCAAACAGTGACAGCCGA.......................................................................................................................................................................................................................................... 25 0 1 154.00 154 51 37 23 31 12 0 0 0 0 0
...................................................................................................................................................................................................TATTAATAGACACATAGATTCGGC.............................................. 24 1 1 14.00 14 7 5 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAAATATTAATAGACACATAGATTCGGC.............................................. 28 2 1 13.00 13 13 0 0 0 0 0 0 0 0 0
......CTTCTACGCAAACAGTGACAGCCG........................................................................................................................................................................................................................................... 24 0 1 11.00 11 4 0 0 1 4 1 1 0 0 0
......CTTCTACGCAAACAGTGACAGCCGAC......................................................................................................................................................................................................................................... 26 0 1 5.00 5 1 0 0 2 2 0 0 0 0 0
.........................................................................................................................................................................................................TAGACACATAGACTCGGCTATTAC........................................ 24 0 1 5.00 5 0 0 0 0 0 5 0 0 0 0
...................................................................................................................................................................................................TATTAATAGACACATAGATTCGGCTA............................................ 26 1 1 3.00 3 0 2 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TATAAATATTAATAGACACATAGATTCGGC.............................................. 30 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..................................................................TAAATGTGTCAAAATATGACTTTTGAA............................................................................................................................................................................ 27 0 1 3.00 3 0 1 1 0 1 0 0 0 0 0
.................................................................................................TTCACTTTACAAGTTTTTTAAATCTATA............................................................................................................................................ 28 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TATTAATAGACACATAGATTCGGCTAT........................................... 27 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................AATATTAATAGACACATAGATTCGGC.............................................. 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0
...........................................................TGCATGGTAAATGTGTCAAAATA....................................................................................................................................................................................... 23 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0
......CTTCTACGCAAACAGTGACAGCCGACAA....................................................................................................................................................................................................................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
................................................................................TATGACTTTTGAATACCTTCACTT................................................................................................................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
......CTTCTACGCAAACAGTGACAGCCGACAAC...................................................................................................................................................................................................................................... 29 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GATTCGGCTATTACATAATATAACAAAA.......................... 28 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................TGTGTCAAAATATGACTTTTGAATACCTT...................................................................................................................................................................... 29 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0
.......TTCTACGCAAACAGTGACAGCCGA.......................................................................................................................................................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGACACATAGACTCGGCTATTACA....................................... 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
...................................................TATGTTCATGCATGGTAAATGTGTCAAAA......................................................................................................................................................................................... 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
......CTTCTACGCAAACAGTGACA............................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0
.........................................................................................................................................................................................................TAGACACATAGATTCGGCTAT........................................... 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAATAGACACATAGACTCGGCTA............................................ 23 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
....................................................................................................................................TAATCAATTGGAAACATGTCAAAAA............................................................................................................ 25 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0
...................................................................................................CACTTTACAAGTTTTTTAAATCTATA............................................................................................................................................ 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTAATAGACACATAGATTCGGCTAT........................................... 25 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0
................................................................................................................................TTTTTAATCAATTGGAAACATGTCAAAAA............................................................................................................ 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.....................................................TGTTCATGCATGGTAAATGTGTCAAA.......................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................TAATCAATTGGAAACATGTCAAAAAT........................................................................................................... 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TATAAATATTAATAGACACATAGATT.................................................. 26 3 2 1.50 3 3 0 0 0 0 0 0 0 0 0
.....................................................TGTTCATGCATGGTAAATGTGTCAAAATA....................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................TGGTAAATGTGTCAAAATA....................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................TAATAGACACATAGACTCGGCTAT........................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................GATTCGGCTATTACATAATATAACA............................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................TAATCAATTGGAAACATGTCAAAAATT.......................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGAAATATTAATAGACACATAGACTC................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......CTTCTACGCAAACAGT................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......CTTCTACGCAAACAGTGAC................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................TTAATCAATTGGAAACATGTCAAAAA............................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................TATTAATAGACACATAGACTCGG............................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................TGTTCATGCATGGTAAATGTGTCAAAA......................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................AACTGCATCTGTGCACACGTATGTTC............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......CTTCTACGCAAACAGTGATAGCCGA.......................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTCGGCTATTACATAATATAAGAAAAAAA....................... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GATTCGGCTATTACATAATATAAGA............................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................TTAATCAATTGGAAACATGTCAAAA............................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...TCTCTTCTACGCAAACAGTGACAGCCGA.......................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCGGCTATTACATAATATAACAAAAA......................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGAAATATTAATAGACACATAGATT.................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TATTAATAGACACATGGATTCGGC.............................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGACACATAGACTCGGCTATTA......................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................TCATGCATGGTAAATGTGTCAAAATA....................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................TGCACACGTATGTTCATGCATGGTA..................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................AACTGCATCTGTGCACACGTATGTTCA.............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................TAAATCTATATTCTTTTTAATCAATTGGA......................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................TGGTAAATGTGTCAAAATATGACTTT................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGACACATAGACTCGGCT............................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................CAATTGGAAACATGTCAAAAATTTT........................................................................................................ 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TAGATTCGGCTATTACATAATATAAGA............................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................AATATGACTTTTGAATACCTTCACTT................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TAATAGACACATAGACTCGGCTATTAC........................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........TCTACGCAAACAGTGACAGCCGA.......................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAAATATTAATAGACACATAGATTCGG............................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................GTGTCAAAATATGACTTTTGAATACCTT...................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................TAGACACATAGACTCGGCTATTACAT...................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................TTCACTTTACAAGTTTTTTAAATCTA.............................................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTAATAGACACATAGACTCGGCTA............................................ 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................TATTAATAGACACATAGATTCGGCT............................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........ACGCAAACAGTGACAGCCGA.......................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................TAGACACATAGACTCGGCTATTACATA..................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
......CTTCTACGCAAACAGTGACAGCCGT.......................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......CTTCTACGCAAACAGTGACAGCC............................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATAGACACATAGACTCGGCTATTAA........................................ 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................TGAAATATTAATAGACACATAGACAA................................................. 26 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............GCAAACAGTGACAGCCGAC......................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................AACTGCATCTGTGCACACGT..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................ATCTATATTCTTTTTAATCAATTGGA......................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................ATTGGAAACATGTCAAAAATTTTA....................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TATTAATAGACACATAGATTCGG............................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TATTAATAGACACATAGACTCGGC.............................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................AATTCGAAAATGTATTCTGCTTGC. 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................ATATGACTTTTGAATACCTTCACTT................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................TATGACTTTTGAATACCTTCACTTTA............................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................TGCACACGTATGTTCATGCATGGT...................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TTAATAGACACATAGATTCGGCT............................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TAGACACATAGACTCGGCTATTACAA...................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................AAATATTAATAGACACATAGATTCGGC.............................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AATAGACACATAGACTC................................................. 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................TGAAATATTAATAGACACATAGATTCGGC.............................................. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................TTTTGAATACCTTCACTTTACAAGT.......................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................TTGGAAACATGTCAAAAATTTTTGCTT................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................ATCAATTGGAAACATATCAAAAATTTT........................................................................................................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................TTCGGCTATTACATAATATAACAAAAAAA....................... 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAATAAAAGAAAAAAATTAGAAAA............... 24 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TATAAATATTAATAGACACATAGA.................................................... 24 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................AATTTTTGTTTTGGATTGCCTTAT...................................................................................... 24 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................ACATAGATTCGGCTATTCTAT...................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TAAGGAAAAAAATCGAAAACGTT........... 23 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0
......TTTCTACGCAAACAGTGACAGCCGA.......................................................................................................................................................................................................................................... 25 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.................ACAGTGACAGCAGACGACTGC................................................................................................................................................................................................................................... 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................AAAAATTCAAAAACGTA........... 17 1 12 0.08 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TACATGATATTAGAAAAAAA....................... 20 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................GTCGATTGGAAACATGT.................................................................................................................. 17 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................TTATTATTGATTATTTGAT....................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................ACAGTGACAGCCGAC......................................................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTGAGAGAAGATGCGTTTGTCACTGTCGGCTGTTGACGTAGACACGTGTGCATACAAGTACGTACCATTTACACAGTTTTATACTGAAAACTTATGGAAGTGAAATGTTCAAAAAATTTAGATATAAGAAAAATTAGTTAACCTTTGTACAGTTTTTAAAAACGAAACGTAACGGAATAATAAATAATAAACTTTATAATTATCTGTGTATCTGAGCCGATAATGTATTATATTCTTTTTTTAAGCTTTTGCATAAGACGAACGC
********************************************************************************************************************************************.....(((((((((......))))).)))).............................****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 M025
embryo
 M053
female body
 O001
Testis
 O002
Head
 GSM343915
embryo
..........................CGGCTGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 27 0 1 106.00 106 23 57 3 17 1 1 3 1 0 0 0
.................................TGACGTAGACACGTGTGCATACAAGT.............................................................................................................................................................................................................. 26 0 1 94.00 94 60 10 22 2 0 0 0 0 0 0 0
...........................GGCTGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 26 0 1 51.00 51 2 27 1 14 4 2 0 1 0 0 0
............................................................................................................TCAAAAAATTTAGATATAAGAAAAATT.................................................................................................................................. 27 0 1 23.00 23 11 1 6 5 0 0 0 0 0 0 0
............................................................................................................TCAAAAAATTTAGATATAAGAAAAAT................................................................................................................................... 26 0 1 18.00 18 11 2 5 0 0 0 0 0 0 0 0
.............................CTGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 24 0 1 14.00 14 0 5 0 2 6 0 0 0 0 0 1
..................................................................................................AGTGAAATGTTCAAAAAATTTAGATAT............................................................................................................................................ 27 0 1 13.00 13 1 1 9 2 0 0 0 0 0 0 0
................................TTGACGTAGACACGTGTGCATACAAGT.............................................................................................................................................................................................................. 27 0 1 13.00 13 11 0 2 0 0 0 0 0 0 0 0
............................GCTGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 25 0 1 12.00 12 0 0 0 2 9 1 0 0 0 0 0
..............................................................................................................................AGAAAAATTAGTTAACCGTTGTACAGT................................................................................................................ 27 1 1 8.00 8 7 0 1 0 0 0 0 0 0 0 0
..............................TGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 23 0 1 6.00 6 0 0 0 0 6 0 0 0 0 0 0
..............................TGTTGACGTAGACACGTGTGCATACAAGT.............................................................................................................................................................................................................. 29 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATACTGGAAGTGAAATGTTCAAAAAATTT.................................................................................................................................................. 29 3 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0
....................CACTGTCGGCTGTTGACGTAGACACGT.......................................................................................................................................................................................................................... 27 0 1 5.00 5 2 1 0 2 0 0 0 0 0 0 0
.TGAGAGAAGATGCGTTTGTCACTGT............................................................................................................................................................................................................................................... 25 0 1 5.00 5 0 3 1 1 0 0 0 0 0 0 0
.......................................................................................................................AGATATAAGAAAAATTAGTTAACCGT........................................................................................................................ 26 1 3 4.00 12 5 1 4 2 0 0 0 0 0 0 0
.................................................................................................................................AAAATTAGTTAACCGTTGTACAGTTTTT............................................................................................................ 28 1 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0
................................................................................ATACTGAAAACTTATGGAAGTGAAATGT............................................................................................................................................................. 28 0 1 4.00 4 0 0 0 4 0 0 0 0 0 0 0
.............................................................................................................................AAGAAAAATTAGTTAACCTTTGTACAGT................................................................................................................ 28 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0
.......................................................................................................................AGATATAAGAAAAATTAGTTAACCT......................................................................................................................... 25 0 1 3.00 3 0 1 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................CGGAATAATAAATAATAAACTTTATAAT................................................................. 28 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0
................................................................................................................................AAAAATTAGTTAACCGTTGTACAGT................................................................................................................ 25 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATGGAAGTGAAATGTTCAAAAAATTT.................................................................................................................................................. 26 0 1 3.00 3 0 2 0 1 0 0 0 0 0 0 0
.....AGAAGATGCGTTTGTCACTGTCGGCT.......................................................................................................................................................................................................................................... 26 0 1 3.00 3 1 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................AGATATAAGAAAAATTAGTTAACCGTTGT..................................................................................................................... 29 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...AGAGAAGATGCGTTTGTCACTGTCGGCT.......................................................................................................................................................................................................................................... 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
..........................CGGCTGTTGACGTAGACACGTGTGC...................................................................................................................................................................................................................... 25 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
.......................................AGACACGTGTGCATACAAGTACGTACCA...................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................TGACGTAGACACGTGTGCATACAAGTA............................................................................................................................................................................................................. 27 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................AAGAAAAATTAGTTAACCGTTGTACAGT................................................................................................................ 28 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
.......................TGTCGGCTGTTGACGTAGACACGTGT........................................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGTGAAATGTTCAAAAAATTTAGAT.............................................................................................................................................. 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..GAGAGAAGATGCGTTTGTCACTGT............................................................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0
.......................................................................................................................AGATATAAGAAAAATTAGTTAACCGTT....................................................................................................................... 27 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...........................GGCTGTTGACGTAGACACG........................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................AGTTAACCTTTGTACAGTTTTTAAAAAC...................................................................................................... 28 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0
..........................CGGCTGTTGACGTAG................................................................................................................................................................................................................................ 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................GAAGTGAAATGTTCAAAA....................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................AAATAATAAATTTTATAATTATCTGTGTAT...................................................... 30 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................AAGAAAAATTAGTTAACCGTT....................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................CGTGTGCATACAAGTACGTACCATTT................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................AAAAAATTTAGATATAAGAAAAAT................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ACAGTTTTTAAAAACGAAACGTAACGGA......................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AATAAACTTTATAATTATCTGTGTAT...................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................ACGTGTGCATACAAGTACGTACCAT..................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................GGAAGTGAAATGTTCAAAAAATTTAGATAT............................................................................................................................................ 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................TCGGCTGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ATAATTATCTGTGTATCTAAGCCGAT............................................ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................CAAAAAAATTTAGATATAAGAAAAAT................................................................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GTGTATCTAAGCCGATAATGTATTAT.................................. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................ATCGGCTGTTGACGTAGACACGTGT........................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................GACGTAGACACGTGTGCATACAAGT.............................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................CCGGCTGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................ACTGAAAACTTATGGAAGTGAAATGT............................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................TGACGTAGACACGTGGGCATACAAGT.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAATTAGTTAACCGTTGTACAGTTTTT............................................................................................................ 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................AGAAAAATTAGTTAACCGTTGTACAG................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................AAATTAGTTAACCGTTGTACAGTTTT............................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................AAAATTTAGATATAAGAAAAATTAGTT.............................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATATTGTTTTTTTAAGCTTTTACAT........... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................ACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................AGATATAAGAAAAATTAGTTAACC.......................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TCTTTTTTTAAGCTTTTACATA.......... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................AAAAAATTTAGATATAAGAAAAATT.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................TGAAAACTTATGGAAGTGAAATGTTCAAAA....................................................................................................................................................... 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................CCGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................AAAAATTAGTTAACCTTTGTACAGT................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................AGTTAACCGTTGTACAGTTTTT............................................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................AAGAAAAATTAGTTAACCGTTGTACAGTTT.............................................................................................................. 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......AAGATGCGTTTGTCACTGTCGGCT.......................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................TCAAAACATTTAGATATAAGAAAAATT.................................................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................GTCGGCTGTTGACGTAGACACGTGT........................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................CACTGTCGGCTGTTGACG................................................................................................................................................................................................................................... 18 0 2 1.00 2 0 0 0 0 0 0 0 0 0 2 0
.............................................................................TTTATACTGAAAACTTATGGAAGTGA.................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................TCAAAAAATTTAGATATAAGA........................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................AAGAAAAATTAGTTAACCGTTGTACAGTT............................................................................................................... 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................CGGCTGTTGACGTAGACACGTGTG....................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................AAGTGAAATGTTCAAAAAATTTAGATAT............................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......GAAGATGCGTTTGTCACTGTCGGCT.......................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................AGTACGTACCATTTACACAGTTTTAT....................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................TCAAAAAAATTAGATATAAGAAAAATT.................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................AAAAATTTAGATATAAGAAAAATTAGT............................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................TCACTGTCGGCTGTTGACGTAG................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................TGTCGGCTGTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................AAGAAAAATTAGTTAACCGTTGT..................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................TGACGTAGACACGTGTACATACAAGT.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................CGGCTGTCGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AAAATTAGTTAACCGTTGTACAGTTTT............................................................................................................. 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................AAAAAATTTAGATATAAGAAAAATTAGT............................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................AGTGAAATGTTCAAAAAATTTAGATATA........................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................CACTGTCGGCTGTTGACGTAGACAC............................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................TGACGTAGACACGTGTGCATACAAGC.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................TCACTGTCGGCTGTTGACGTAGACACGT.......................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................CGGCTTTTGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................AGACACGTGTGCATACAAGT.............................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................GTCGGCTGTTGATGTAGACACGTG......................................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TCTGTGTATCTGAGCCGATAA.......................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................CAAAAAATTTAGATATAAGAAAAAT................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................AAAAATTAGTTAACCGTTGTACAGTTTT............................................................................................................. 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................GGCTGTTGACGTAGACACGTGTGCAA.................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................GCTGTCGACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................AAGAAAAATTAGTTAACCGTTGTACAG................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAGCCGATAATGTATTATATTCTT............................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................GACGTAGACACGTGTGCAT.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................TGTCGGCTGTTGACGTAGACACGT.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................CGGCTGTTGACGTAGACACGTGGGCAT.................................................................................................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAGTGAAATGTTCAAAAAATTTAGAT.............................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................AAGAAAAATTAGTTAACCGTTGTACAGTTTTT............................................................................................................ 32 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................ATACTGAAAACTTATGGAAGTGAAAT............................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................AAATAATAAACTTTATAATTATCTGTGT........................................................ 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................TTGTACAGTTTTTAAAAACGAAACGT............................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................ATACTGAAAACTTATGGAAGTGAAA................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................ACAAGTACGTACCATTTACACAGTTTTATA...................................................................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGATATAAGAAAAATTAGTTAACCG......................................................................................................................... 25 1 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................TGGAATTGAAATGTTGAATAAAT.................................................................................................................................................... 23 3 5 0.60 3 0 0 0 3 0 0 0 0 0 0 0
............................................CGTGTGCATACAAGT.............................................................................................................................................................................................................. 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
................TTGTCACTGTCGGCT.......................................................................................................................................................................................................................................... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................AAGATATAAGAAAAATTAGTTAACCGTTGT..................................................................................................................... 30 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTAGATATAAGAAAAATTAGTTAACCGT........................................................................................................................ 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGATATAAGAAAAATTAGTTTACCGT........................................................................................................................ 26 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTATCTGAGCCGATAAT......................................... 17 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
TTGAGAGAAGATGCGT......................................................................................................................................................................................................................................................... 16 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TTATATTATTTTTTTAGGCTTTCGC............. 25 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGATATAATAAAAATTAGTTAACCTT........................................................................................................................ 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................AAAAAATTTAGATAT............................................................................................................................................ 15 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................AAAAAATTTAGATATAAT......................................................................................................................................... 18 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
.AAAAAGAAGATGCGTTTGTCA................................................................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................AAAAAATTTAGATATAATAAAAAATAGT............................................................................................................................... 28 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AAATTTTAAAATTATCTGTGT........................................................ 21 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
GTGAGAGAAGATGCGT......................................................................................................................................................................................................................................................... 16 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
...AGAGAAGATGCGGTT....................................................................................................................................................................................................................................................... 15 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
............GCGTTTGTCACTGTTTGTTGT........................................................................................................................................................................................................................................ 21 3 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................AAAAATTAGTTAACATT........................................................................................................................ 17 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................AGAAAAATTTGTTAAC........................................................................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................ACACTGTCGGCTGTTGT..................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_3978:5498-5762 + dsi_20012 AACTCTCTTCTACGCAA----ACAGTGAC---AGCCGACAACTGCATCTGTGCACACGTATGTTCATGCATGGTAAATGTGTCAA-----------------------------------------------------------AATATGACTTTTGAATACCTTCACTTT-------AC---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATCTATATTCTTTTTAATCAATTGGAAACATGTCAAAAATTTTTGCTTTGCATTGCCTTAT------TATTTATTATTTGAAAT-----------------------------------------------------------------------------------ATTAATAGACACATAGACTCGGCTATTAC--ATAATA--------------------------------------TAAGAAA-------------AAAA---TTCGAAAAC---------------------------------------------------------------------------GTATTCTGCTTGCG
droSec2 scaffold_66:125737-126005 + AACTCTCTTCTAAGCAA----ACAGTGAC---AGCCGACAACTGAATCTGTGCACACGTATGTTCATGCATGGTGAATGTGTCAA-----------------------------------------------------------AATATGA----------CCTTCACTTT-------AC---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATCTATATTCTTTTTAATCAATTGGCAACATGTCAAAAATTTTTGCTTTGCATTGCCTTAACGTTATTATT----ATTTGA---------------------------------------------------------------------ATATAGCATATAAAT--ATTAATAGCCACATAGATTCGGCTATTAG--ATAATA--------------------------------------TAACAAA-------------AAAA---TTCGAAAAT---------------------------------------------------------------------------GTATTCTGCTTGCG
dm3 chr3LHet:1363699-1363956 + AGCTCTTTTCTACGCAT----ACAGTGAT---AGCAGACAACTATATGTGTGCACACGTATGCTCATGCATTGTAAATTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACCTT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTC------TTTAAATCTGTATTATTTTTTATCAATTGGCACTATCCGAAAAATTCTTGTTTTGCATTGCCTTAACGTTATTATT----ATTTGAAA--------------------------ATATATTAGAAAAAGCCAAATCCATGTACATAT------------------------------------------------------------CA--------------------------------------TAACAA------------------------------------------------------------AATAAATTTCAAAAATTACTTTAT-----------------------------ATTAGA
droEre2 scaffold_4929:24998435-24998697 + AGCTCTCTTGTACACAT----ACAGCGAC---AGTCGATCACTGTATGTGTGCACACGTA-GCTCATGTATTGTAAATTTGACAA-----------------------------------------------------------AATAAGC----------CCTTTCCTTC-------AA---------------------------------------------------------------------------------------------------------------------------------AAGTGTACGGACTTTCAATCTATATTATTTGTAATCGATTGCCACCATGTAAAAAACTCTTATTTTGCATTGCCTTAACATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA-------------TAAA---TGTTTATA-----------------ATAATACCT-----AATTAATTTCGTAAATTACTTTATACCAGAAAATGTGTCGTTAGAGTATTCAGCTTGCG
droYak3 v2_chrUn_3773:14866-15130 - AGCTCTCTTGTACGCAT----ACAGCGAC---AGCTGACCACTGTATTGGTGCACACGTATGCATATGCATTGTAAAAATGACAA-----------------------------------------------------------AATATGC----------CCTTCATTTT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTCTTAGACTTTAAATTTATATTATTTTTTATAAATTGCCACCAC-TTAAAAACTCTAGTTTTGCATTGCCTTAATATAACAATT----ATTTAA---------------------------------------------------------------------ATTCAACATAGAAAT--AATAATAG--------------------------------------------------------------------------------------------------------------------------------------------CACAAATATGATTTCATTTAATAATAGTTTTCATTAGAGTATTCAGCGTACG
droEug1 scf7180000409109:258060-258219 - TCAAAATATCTTT-----------------------------------------------------------G----------------------------------------------------------AA--------------------------AAGG-TCATAAT-------AT---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATATTAATATTGTTTAAAATATATAAAAAAAATAATATATTATTATTTTATAACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTAAATAATATTAATAATATATATAGCTATAAAATGGTCAGAACAT---------------------------------------------------------------------------TAGTACTGTTTGCT
droBia1 scf7180000301470:104445-104662 + CGCTCTCATGCACGCAT----ACAGCGAC---AGAACACGATTGTATGTGTGCACATGTATTCCCGCGCATTGTTATTGT-TCAATTTTCGCCGCAGCCCGCTTATTGAGCAGGTTG----------------------------A---------------------TT----------------------------------------------------------------------ATTTTTATATTTATTTTATTT----------CATATTTTGATTTTAGAATAA--------------TTAAAATTAT------------------------------------------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-------------AACA---TTTATGTATGTATTTCTATATTAAC---------TATTT---------------------------------------------AAATTATTTATGAA
droTak1 scf7180000415386:11041-11293 - CGCTCTCTTGTTCGTAT----ACAGCGAC---AGCCGACGACTGTATGTATTCACATGTATTCACAAGCATTTC--TT-----------CGCTGCAGCGCGCTGGCTT--------AATATACTAATTATATAAAAATTATAAC-----------------------------------------------------------------------------------------------ATTAT----------------------TAAAAACA-CTTAT----------TTGAAAATCCTTTTATAACAACTATTCTAATTT------AGTATATTTTT------------T---------------AT-----------------------------TTATTTAATTT-------------------------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------------------------------------------------ACTTTATTTCATATATGACTTCACATTGGAATAATTGTCATTAGGGTATTCAGCGTGCG
droEle1 scf7180000490974:19370-19526 - ATAGGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAACTATTTTTTTATTAATTAATTAATGCGTAATGTATCATAAGCGTTCAGCA-------------------------------------GAA--------------------------------CAAAC-------------TTGA----TCATTGATTACTGATCCATTAGTGATCATGTTGTTCTGTCCATTGT--TTTACATAA-------------------------------------ATAAA-------------GAAA---TCCAAATAT---------------------------------------------------------------------------G-------TTGTCT
droRho1 scf7180000772181:406-670 + CGATCTCTTGCACGCAT----ACTGCGAC---AGCCGACGACTGTATGTGTGCACATGTATTCACAAGCGAAGAAATT-----------CGCTGCAGCGCGCTGTCGA--------AATATACTCTTTATTTTAAAATTCTAAC-----------------------------------------------------------------------------------------------ATTAT----------------------TATATTTACTTTAT----------T--------------TACTAATTATTCGAATGT------TTAATATTTTT------------T---------------A--------------------------------------------------------------------------G---------------------------------------------------TAATGACCAAATATAACCAAGTAT--------------------------------------------------------------------------------------------------AAAAAAAAACAT-----AATTTATTTCATACATGACTTCATATTGGAATCATTGTCATTAGGGTATTCAGCACGCG
droFic1 scf7180000451535:5514-5596 - TATTCTTTATTAAACATCGAAA---CATCGGTAAAACAT-------------------------------------------------------------------------------------------------------------------------------------------CG-------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTTGCCCTTTGTTTTGCGCTGT------AATTTATTATTTGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droKik1 scf7180000299628:7345-7599 + CGTTCTCTTCTACGCAT----TCAGCGAC----GCCGCCGGGTGTTTGTGTGCAAACGGG-CCTCAAGA-AGGCC-----------------------------------------A----------------------------ATTTAT----------TTTTTATTTT-------AA---------------------------------------------------------------------------------------------------------------------------------CATCTC------TTTTATTTCATATACTTATTAATCTATAAATCTATTTTTTATAATTTATGAAATGAATTATGTAATTGTAAATACA------------------------------T----------------------------------------ATAATTATGTATCAACTATTTTT--ATTATTTACAATACTTATTTAATAATTAA--AATATA--------------------------------------TAATATA-------------CATA---CAGATTT-------------------------------------------------------------------------------ATGTATTCTATA
droAna3 scaffold_13266:8209023-8209138 + ATTGCTGAA------------------AC---A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTCGTTT------------------------------GAAGAAATGAAAAGTAAGTACATTTTGAAGACT--------------------------------------------------------------------------------------------------------------------ATTTTGGTATAATTTAAATAATGCATATTTATAGAAAA---TCCGAAAAC---------------------------------------------------------------------------GAATCATTTGTGGG
droBip1 scf7180000394096:7703-7862 - TAAAAATTA--------------------------------------------------------------------------------------------------------------------------ATGGAATCT--------------------------------------TG-------GA--------------------------------------------------------ATATTCTTTTTAA--------TGATTTTGCTGTGT----------T--------------TCAAAATTAAAAACATTT------CTAATG------------TTAATCAAAATCCCA--TCCCTTGCTATC-----------------------------AA---------------------------------------------------------------------------------------------------------------------------ATTTTAAATGAAAATAAATAAGTTACTTTGAGACATTTTAAGAAA-------------TAAA---TTTAG------------------------------------------------------------------------------------------GAA
dp5 3:213890-213961 - ACCTATCATT--------------------------------------------------------------G----------------------------------------------------------GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT---------------------------------------------------------------------------------------------CAAACTTTTTGAATATAT------------------------------------------------CATTAC--ACAATA--------------------------------------TAATACA-------------AAAG---TTTGAAAAA---------------------------------------------------------------------------GTAT----------
droPer2 scaffold_1:7397359-7397476 - TCATTTTTG--------------------------------------------------------------------------------------------------------------------------GTATAATTATGAAATTAT---------------------------------------------------------------------------------------------------------------------GATTTATGGTTTAT----------T--------------TTATAAGTAT------TTAAAAACAATAAACTTTCTTACTTACTGGACAAAAGCCTTTAATTTTTGCATTTAACTTATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droWil2 scf2_1100000004884:17069-17259 + CAAAATTTG---------------------------------------------------------------------------------------------------------------------------------------------ATCTTTCAGAATTTTAAAATT-------AGAATTTTTCAAAATTTTCATTCTTTAAAATCTGTAAGTTGACAATCACTAATCGCTAATCA----------------------------------------------------------------------------------------------------------------------------CTAATTCAATTGTAT--------------TGTTTCTTATATAAAA------------------------------------------------------------------------------------------TTTGAAATTTTTACAACT-----------TC--------------------------------------CAAAAGA-------------AAAA---TT-GGGAAA-----------------------------AAATTCAAATCATCC-------------------------------AAATTTTAATTGAT
droVir3 scaffold_13050:567603-567725 + TAACCAGAC--------------AGA------------------------------------------------------------------------------------------------------------TACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATTTTTATTTT--------------------------------------TTTTTATTTTAT------TATTTTTTGTATGAATTATAAAGAA--------------------------------CAAAGCACTCTTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------AATAA---------------------------------------------AATTAATTTAATTT
droMoj3 scaffold_6500:27389696-27389816 - AGATATGAA------------------------------------------------------------------------------------------------------------------------------ATTTCTAAT-----------------------------------------------------------------------------------------------ATCTTCATACATATCTTTGGACATTCTGAAATTTAACTTCC----------T--------------TTAAAATTAT------------------------------------------ATCAAAGAAATCTCATTTGGATTAGTTTAG------TTTATATTGGTTGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCA
droGri2 scaffold_15110:20338025-20338159 + TTTTCAAAC------------------------------------------------------------ACTTCAG------------------------------------------------------------------------------------------ATTTTACAAATTTGAT---------------------------------------------------------TGATT------------------------------------------------------------------------TTAATTT------GTTCCTCTTTT------------T---------------CT-----------------------------TTATTTAAATT-----------------------------------------------------------------------------------ATTTATAGCAATACAAATACAACAATTATCAAAAATA--------------------------------------TAAAAAA-------------AAAA---TACACACA------------------------------------------------------------------------------ATATTGC--TTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACTCTCTTCTACGCAA----ACAGTGAC---AGCCGACAACTGCATCTGTGCACACGTATGTTCATGCATGGTAAATGTGTCAA-----------------------------------------------------------AATATGACTTTTGAATACCTTCACTTT-------AC---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATCTATATTCTTTTTAATCAATTGGAAACATGTCAAAAATTTTTGCTTTGCATTGCCTTAT------TATTTATTATTTGAAAT-----------------------------------------------------------------------------------ATTAATAGACACATAGACTCGGCTATTAC--ATAATA--------------------------------------TAAGAAA-------------AAAA---TTCGAAAAC---------------------------------------------------------------------------GTATTCTGCTTGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......CTTCTACGCAA----ACAGTGAC---AGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................251154.001540000003751233112000000
......CTTCTACGCAA----ACAGTGAC---AGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24111.001100010004014010000
......CTTCTACGCAA----ACAGTGAC---AGCCGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.00500000001022000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACACATAGACTCGGCTATTAC--.........................................................................................................................................................................2415.00500000000000050000
.........................................................................TAAATGTGTCAA-----------------------------------------------------------AATATGACTTTTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000010101000000
...................................................................................................................................................................TTCACTTT-------AC---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATCTATA........................................................................................................................................................................................................................................................................................................................................................................2812.00200000010100000000
..................................................................TGCATGGTAAATGTGTCAA-----------------------------------------------------------AATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200000010001000000
......CTTCTACGCAA----ACAGTGAC---AGCCGACAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000000200000000
..................................................................................................................................................TATGACTTTTGAATACCTTCACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000000000
......CTTCTACGCAA----ACAGTGAC---AGCCGACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.00200000011000000000
.............................................................................TGTGTCAA-----------------------------------------------------------AATATGACTTTTGAATACCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.00200010010000000000
.......TTCTACGCAA----ACAGTGAC---AGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000020000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACACATAGACTCGGCTATTAC--A........................................................................................................................................................................2512.00200000000000020000
..........................................................TATGTTCATGCATGGTAAATGTGTCAA-----------------------------------------------------------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.00200000000200000000
......CTTCTACGCAA----ACAGTGAC---A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200002000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGACACATAGACTCGGCTA...............................................................................................................................................................................2312.00200000000000020000
....................................................................................................................................................................................................................................................................................................................................................TAATCAATTGGAAACATGTCAAAAA........................................................................................................................................................................................................................................................................................................................................2512.00200000000101000000
.....................................................................................................................................................................CACTTT-------AC---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATCTATA........................................................................................................................................................................................................................................................................................................................................................................2612.00200000010100000000
................................................................................................................................................................................................................................................................................................................................................TTTTTAATCAATTGGAAACATGTCAAAAA........................................................................................................................................................................................................................................................................................................................................2912.00200000000200000000
............................................................TGTTCATGCATGGTAAATGTGTCAA-----------------------------------------------------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................................TAATCAATTGGAAACATGTCAAAAAT.......................................................................................................................................................................................................................................................................................................................................2612.00200000010100000000
............................................................TGTTCATGCATGGTAAATGTGTCAA-----------------------------------------------------------AATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
......................................................................TGGTAAATGTGTCAA-----------------------------------------------------------AATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGACACATAGACTCGGCTAT..............................................................................................................................................................................2411.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................TAATCAATTGGAAACATGTCAAAAATT......................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAT-----------------------------------------------------------------------------------ATTAATAGACACATAGACTC....................................................................................................................................................................................2611.00100000000000010000
......CTTCTACGCAA----ACAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
......CTTCTACGCAA----ACAGTGAC---.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
...................................................................................................................................................................................................................................................................................................................................................TTAATCAATTGGAAACATGTCAAAAA........................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------ATTAATAGACACATAGACTCGG..................................................................................................................................................................................2311.00100000000000010000
............................................................TGTTCATGCATGGTAAATGTGTCAA-----------------------------------------------------------AA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
.......................................AACTGCATCTGTGCACACGTATGTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................TTAATCAATTGGAAACATGTCAAAA.........................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
...TCTCTTCTACGCAA----ACAGTGAC---AGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACACATAGACTCGGCTATTA............................................................................................................................................................................2311.00100000000000010000
...............................................................TCATGCATGGTAAATGTGTCAA-----------------------------------------------------------AATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..................................................TGCACACGTATGTTCATGCATGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.......................................AACTGCATCTGTGCACACGTATGTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................TAAATCTATATTCTTTTTAATCAATTGGA.....................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
......................................................................TGGTAAATGTGTCAA-----------------------------------------------------------AATATGACTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACACATAGACTCGGCT................................................................................................................................................................................1911.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................CAATTGGAAACATGTCAAAAATTTT....................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
................................................................................................................................................AATATGACTTTTGAATACCTTCACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGACACATAGACTCGGCTATTAC--.........................................................................................................................................................................2711.00100000000000010000
........TCTACGCAA----ACAGTGAC---AGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
..............................................................................GTGTCAA-----------------------------------------------------------AATATGACTTTTGAATACCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACACATAGACTCGGCTATTAC--AT.......................................................................................................................................................................2611.00100000000000010000
...................................................................................................................................................................TTCACTTT-------AC---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATCTA..........................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATAGACACATAGACTCGGCTA...............................................................................................................................................................................2411.00100000000000010000
...........ACGCAA----ACAGTGAC---AGCCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACACATAGACTCGGCTATTAC--ATA......................................................................................................................................................................2711.00100000000000010000
......CTTCTACGCAA----ACAGTGAC---AGCCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
......CTTCTACGCAA----ACAGTGAC---AGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGACACATAGACTCGGCTATTAA--.........................................................................................................................................................................2511.00100000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAT-----------------------------------------------------------------------------------ATTAATAGACACATAGACAA....................................................................................................................................................................................2611.00100000000000010000
.............GCAA----ACAGTGAC---AGCCGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.......................................AACTGCATCTGTGCACACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................ATCTATATTCTTTTTAATCAATTGGA.....................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................ATTGGAAACATGTCAAAAATTTTA...................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------ATTAATAGACACATAGACTCGGC.................................................................................................................................................................................2411.00100000000000010000
.................................................................................................................................................ATATGACTTTTGAATACCTTCACTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
..................................................................................................................................................TATGACTTTTGAATACCTTCACTTT-------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..................................................TGCACACGTATGTTCATGCATGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGACACATAGACTCGGCTATTAC--AA.......................................................................................................................................................................2611.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGACACATAGACTC....................................................................................................................................................................................1711.00100000000001000000
........................................................................................................................................................TTTTGAATACCTTCACTTT-------AC---------------------------------------------------------------------------------------------------------------------------------AAGT............................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................TTGGAAACATGTCAAAAATTTTTGCTT...............................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.....................ACAGTGAC---AGCCGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
AACTCTCTTCTAAGCAA----ACAGTGAC---AGCCGACAACTGAATCTGTGCACACGTATGTTCATGCATGGTGAATGTGTCAA-----------------------------------------------------------AATATGA----------CCTTCACTTT-------AC---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATCTATATTCTTTTTAATCAATTGGCAACATGTCAAAAATTTTTGCTTTGCATTGCCTTAACGTTATTATT----ATTTGA---------------------------------------------------------------------ATATAGCATATAAAT--ATTAATAGCCACATAGATTCGGCTATTAG--ATAATA--------------------------------------TAACAAA-------------AAAA---TTCGAAAAT---------------------------------------------------------------------------GTATTCTGCTTGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................ATTTTTGCTTTGCATTGCCTTAACGTTA.............................................................................................................................................................................................................................................................................................................2811.0011000
.................................................................................................................................................................................................................................................................................................................................................................................TGCTTTGCATTGCCTTAACGTTAT............................................................................................................................................................................................................................................................................................................2470.4333000
dm3
AGCTCTTTTCTACGCAT----ACAGTGAT---AGCAGACAACTATATGTGTGCACACGTATGCTCATGCATTGTAAATTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACCTT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTC------TTTAAATCTGTATTATTTTTTATCAATTGGCACTATCCGAAAAATTCTTGTTTTGCATTGCCTTAACGTTATTATT----ATTTGAAA--------------------------ATATATTAGAAAAAGCCAAATCCATGTACATAT------------------------------------------------------------CA--------------------------------------TAACAA------------------------------------------------------------AATAAATTTCAAAAATTACTTTAT-----------------------------ATTAGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................TTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACCTT-------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................262055.15110300000000000000000000000000000000000000006000300000005000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000015700009300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................TTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACCTT-------AG---------------------------------------------------------------------------------------------------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................28207.95159000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000004000000000000000000030000000100000000000000910005600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTGCATTGCCTTAACGTTATTAT.........................................................................................................................................................................................................................................................................................................28203.106200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000062000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACCTT-------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.553101000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000
..................................................................................................................................................TATGC----------CCTTCACCTT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTC------TTT.................................................................................................................................................................................................................................................................................................................................................................................26201.553100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AACGTTATTATT----ATTTGAAA--------------------------ATATA.............................................................................................................................................................................................................................................................25131.46190000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000010100000000000000000000000000000000000000000000000000000000000000000000520024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGAT---AGCAGACAACTATATGTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2681.38110000000000001000000000000000000000000000000000100000000001000000000000000000000000100020000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGAT---AGCAGACAACTATATGTGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2581.38110000000000000000000000000000000000000000100000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000002010101100000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
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.....................................................................ATTGTAAATTTGACAA-----------------------------------------------------------AAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19201.302600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TATGC----------CCTTCACCTT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTC------TT..................................................................................................................................................................................................................................................................................................................................................................................25201.302600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000001000001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------CA--------------------------------------TAACAA------------------------------------------------------------AATAAATTTCAAAAAT...........................................25131.231600000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.15230000000000000000000000400000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000300000000
...........................................................................AATTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.102200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAA------------------------------------------------------------AATAAATTTCAAAAATTACTT......................................27131.08140000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000731000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................T----ATTTGAAA--------------------------ATATATTAGAAAAAGCC.................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................TT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTC------TTTAAATCTGTATT......................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................ATCTGTATTATTTTTTATCAATTG.......................................................................................................................................................................................................................................................................................................................................................2421.0020000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAAAAGCCAAATCCATGTACA....................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................TGACAA-----------------------------------------------------------AATATGC----------CCTTCACCTT-------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.901800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTCTACGCAT----ACAGTGAT---AGCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.851700000000000100000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000011000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TGCATTGTAAATTTGACAA-----------------------------------------------------------AATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.801600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................AAATTCTTGTTTTGCATTGCCTT....................................................................................................................................................................................................................................................................................................................23200.801600000000000000000000000000000000000000000000000000010000000000000000000000000000001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TTCTTGTTTTGCATTGCCTTAACGT...............................................................................................................................................................................................................................................................................................................25200.80160001000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.................................................................................................................................................................................................................................................................................................................................................................................................AACGTTATTATT----ATTTGAAA--------------------------ATATAT............................................................................................................................................................................................................................................................26130.77100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTGACAA-----------------------------------------------------------AATATGC----------CCTTCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGAT---AGCAGACAACTATATGTGTGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.7560000000000000000000000000000000000000000010000000000000000120000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AACGTTATTATT----ATTTGAAA--------------------------A.................................................................................................................................................................................................................................................................21200.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000012000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................CGTATGCTCATGCATTGTAAATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TTTTGCATTGCCTTAACGTTATTAT.........................................................................................................................................................................................................................................................................................................25200.701400000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..............................................................................................................................................................................................................................................................................................................................................................................TCTTGTTTTGCATTGCCTTAACGT...............................................................................................................................................................................................................................................................................................................24200.65130000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000004140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
.............................................................................TTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACCTT-------AG---------------------------------------------------------------------------------------------------------------------------------AA..............................................................................................................................................................................................................................................................................................................................................................................................29200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AAAATTCTTGTTTTGCATTGCCTT....................................................................................................................................................................................................................................................................................................................24200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAA------------------------------------------------------------AATAAATTTCAAAAATTACT.......................................26130.6280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTTGACAA-----------------------------------------------------------AATATGC----------CCTTCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TTTTGCATTGCCTTAACGTTATTATT----A...................................................................................................................................................................................................................................................................................................27200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------CA--------------------------------------TAACAA------------------------------------------------------------AATAAATTTCAAAAATT..........................................26130.5470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................AATATGC----------CCTTCACCTT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTC------T...................................................................................................................................................................................................................................................................................................................................................................................26200.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTCAAAAATTACTTTAT-----------------------------ATTA..26200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................GCATTGTAAATTTGACAA-----------------------------------------------------------AATATGC----------CCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........CTACGCAT----ACAGTGAT---AGCAGACAACTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.4020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................TGACAA-----------------------------------------------------------AATATGC----------CCTTCACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TTTTGCATTGCCTTAACG................................................................................................................................................................................................................................................................................................................18200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................................................................................................................................................................................................................................................................................................................................................................................AACGTTATTATT----ATTTGAAA--------------------------ATATATT...........................................................................................................................................................................................................................................................27120.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTACATAT------------------------------------------------------------CA--------------------------------------TAACAA------------------------------------------------------------AATAAAT....................................................26130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCTCTCTTGTACACAT----ACAGCGAC---AGTCGATCACTGTATGTGTGCACACGTA-GCTCATGTATTGTAAATTTGACAA-----------------------------------------------------------AATAAGC----------CCTTTCCTTC-------AA---------------------------------------------------------------------------------------------------------------------------------AAGTGTACGGACTTTCAATCTATATTATTTGTAATCGATTGCCACCATGTAAAAAACTCTTATTTTGCATTGCCTTAACATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA-------------TAAA---TGTTTATA-----------------ATAATACCT-----AATTAATTTCGTAAATTACTTTATACCAGAAAATGTGTCGTTAGAGTATTCAGCTTGCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................TATTTGTAATCGATTGCCACCATG...............................................................................................................................................................................................................................................................................................................................................2470.5744000000
.........................................................................................................................................................................................................................................................................................................................................TATATTATTTGTAATCGATTGCCACCA.................................................................................................................................................................................................................................................................................................................................................2740.5022000000
...................................................................................................................................................................................................................................................................................................................................TCAATCTATATTATTTGTAATCGAT.........................................................................................................................................................................................................................................................................................................................................................2550.2011000000
....................................................................................................................................................................................................................................................................................................................................CAATCTATATTATTTGTAATCGATA........................................................................................................................................................................................................................................................................................................................................................2550.2011000000
..................................................................................................................................................................................................................................................................................................................................................TGTAATCGATTGCCACCATGTAAAAAAC.......................................................................................................................................................................................................................................................................................................................................2850.2011000000
...........................................................................................................................................................................................................................................................................................................................................TATTATTTGTAATCGATTGCCACCA.................................................................................................................................................................................................................................................................................................................................................2560.1711000000
...........................................................................................................................................................................................................................................................................................................................................TATTATTTGTAATCGATTGCCACCATG...............................................................................................................................................................................................................................................................................................................................................2760.1711000000
.......................................................................................................................................................................................................................................................................................................................................................TCGATTGCCACCATGTAAAAAACTC.....................................................................................................................................................................................................................................................................................................................................2560.1711000000
...............................................................................................................................................................................................................................................................................................................................................ATTTGTAATCGATTGCCACCATG...............................................................................................................................................................................................................................................................................................................................................2370.1411000000
................................................................................................................................................................................................................................................................................................................................................TTTGTAATCGATTGCCACCATGTAAA...........................................................................................................................................................................................................................................................................................................................................2670.1411000000
..........................GAC---AGTCGATCACTGTATGTGTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.1111000000
.................................GTCGATCACTGTATGTGTGCACACGTA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.1111000000
.................................GTCGATCACTGTATGTGTGCACAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24100.1011000000
droYak3
AGCTCTCTTGTACGCAT----ACAGCGAC---AGCTGACCACTGTATTGGTGCACACGTATGCATATGCATTGTAAAAATGACAA-----------------------------------------------------------AATATGC----------CCTTCATTTT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTCTTAGACTTTAAATTTATATTATTTTTTATAAATTGCCACCAC-TTAAAAACTCTAGTTTTGCATTGCCTTAATATAACAATT----ATTTAA---------------------------------------------------------------------ATTCAACATAGAAAT--AATAATAG--------------------------------------------------------------------------------------------------------------------------------------------CACAAATATGATTTCATTTAATAATAGTTTTCATTAGAGTATTCAGCGTACGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....TCTTGTACGCAT----ACAGCGAC---AGCTGACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.6012012000000000
........................................................................................................................................................................................................................................................................................................................................................................AAAAACTCTAGTTTTGCATTGCCT.....................................................................................................................................................................................................................................................................................................................24200.6012012000000000
.......TTGTACGCAT----ACAGCGAC---AGCTGACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.20400000000004
....................................GACCACTGTATTGGTGCACACGTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15303000000000
.....TCTTGTACGCAT----ACAGCGAC---AGCTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000000000
...............................................................................TGACAA-----------------------------------------------------------AATATGC----------CCTTCATTTT-------AG---------------------------------------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000000000
................................................................................................................................................AATATGC----------CCTTCATTTT-------AG---------------------------------------------------------------------------------------------------------------------------------AAGTTCT.........................................................................................................................................................................................................................................................................................................................................................................................26200.10202000000000
..........................................................................AAAAATGACAA-----------------------------------------------------------AATATGC----------CCTTCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
..............................................................................ATGACAA-----------------------------------------------------------AATATGC----------CCTTCATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
................T----ACAGCGAC---AGCTGACCACTGTATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
...................................TGACCACTGTATTGGTGCACACGTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
.......................AGCGAC---AGCTGACCACTGTATTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.....TCTTGTACGCAT----ACAGCGAC---AGCTGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
...............................................................................TGACAA-----------------------------------------------------------AATATGC----------CCTTCATTTT-------AG---------------------------------------------------------------------------------------------------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
...............................................................................TGACAA-----------------------------------------------------------AATATGC----------CCTTCATTTT-------AG---------------------------------------------------------------------------------------------------------------------------------AA..............................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................TAAAAACTCTAGTTTTGCATTGCCT.....................................................................................................................................................................................................................................................................................................................25200.05101000000000
......................................CCACTGTATTGGTGCACACGTATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
droEug1
TCAAAATATCTTT-----------------------------------------------------------G----------------------------------------------------------AA--------------------------AAGG-TCATAAT-------AT---------------------------------------------------------------------------------------------------------------------------------AAGTTT------TTTAAATATTAATATTGTTTAAAATATATAAAAAAAATAATATATTATTATTTTATAACTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTTAAATAATATTAATAATATATATAGCTATAAAATGGTCAGAACAT---------------------------------------------------------------------------TAGTACTGTTTGCTSizeHit CountTotal NormTotal
No Reads
droBia1
CGCTCTCATGCACGCAT----ACAGCGAC---AGAACACGATTGTATGTGTGCACATGTATTCCCGCGCATTGTTATTGT-TCAATTTTCGCCGCAGCCCGCTTATTGAGCAGGTTG----------------------------A---------------------TT----------------------------------------------------------------------ATTTTTATATTTATTTTATTT----------CATATTTTGATTTTAGAATAA--------------TTAAAATTAT------------------------------------------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-------------AACA---TTTATGTATGTATTTCTATATTAAC---------TATTT---------------------------------------------AAATTATTTATGAASizeHit CountTotal NormTotal
No Reads
droTak1
CGCTCTCTTGTTCGTAT----ACAGCGAC---AGCCGACGACTGTATGTATTCACATGTATTCACAAGCATTTC--TT-----------CGCTGCAGCGCGCTGGCTT--------AATATACTAATTATATAAAAATTATAAC-----------------------------------------------------------------------------------------------ATTAT----------------------TAAAAACA-CTTAT----------TTGAAAATCCTTTTATAACAACTATTCTAATTT------AGTATATTTTT------------T---------------AT-----------------------------TTATTTAATTT-------------------------------------------------------------------------------------------AT-----------------------------------------------------------------------------------------------------------------------------------ACTTTATTTCATATATGACTTCACATTGGAATAATTGTCATTAGGGTATTCAGCGTGCGSizeHit CountTotal NormTotal
No Reads
droEle1
ATAGGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAACTATTTTTTTATTAATTAATTAATGCGTAATGTATCATAAGCGTTCAGCA-------------------------------------GAA--------------------------------CAAAC-------------TTGA----TCATTGATTACTGATCCATTAGTGATCATGTTGTTCTGTCCATTGT--TTTACATAA-------------------------------------ATAAA-------------GAAA---TCCAAATAT---------------------------------------------------------------------------G-------TTGTCTSizeHit CountTotal NormTotal
No Reads
droRho1
CGATCTCTTGCACGCAT----ACTGCGAC---AGCCGACGACTGTATGTGTGCACATGTATTCACAAGCGAAGAAATT-----------CGCTGCAGCGCGCTGTCGA--------AATATACTCTTTATTTTAAAATTCTAAC-----------------------------------------------------------------------------------------------ATTAT----------------------TATATTTACTTTAT----------T--------------TACTAATTATTCGAATGT------TTAATATTTTT------------T---------------A--------------------------------------------------------------------------G---------------------------------------------------TAATGACCAAATATAACCAAGTAT--------------------------------------------------------------------------------------------------AAAAAAAAACAT-----AATTTATTTCATACATGACTTCATATTGGAATCATTGTCATTAGGGTATTCAGCACGCGSizeHit CountTotal NormTotal
No Reads
droFic1
TATTCTTTATTAAACATCGAAA---CATCGGTAAAACAT-------------------------------------------------------------------------------------------------------------------------------------------CG-------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTTGCCCTTTGTTTTGCGCTGT------AATTTATTATTTGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotal
No Reads
droKik1
CGTTCTCTTCTACGCAT----TCAGCGAC----GCCGCCGGGTGTTTGTGTGCAAACGGG-CCTCAAGA-AGGCC-----------------------------------------A----------------------------ATTTAT----------TTTTTATTTT-------AA---------------------------------------------------------------------------------------------------------------------------------CATCTC------TTTTATTTCATATACTTATTAATCTATAAATCTATTTTTTATAATTTATGAAATGAATTATGTAATTGTAAATACA------------------------------T----------------------------------------ATAATTATGTATCAACTATTTTT--ATTATTTACAATACTTATTTAATAATTAA--AATATA--------------------------------------TAATATA-------------CATA---CAGATTT-------------------------------------------------------------------------------ATGTATTCTATASizeHit CountTotal NormTotal
No Reads
droAna3
ATTGCTGAA------------------AC---A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTCGTTT------------------------------GAAGAAATGAAAAGTAAGTACATTTTGAAGACT--------------------------------------------------------------------------------------------------------------------ATTTTGGTATAATTTAAATAATGCATATTTATAGAAAA---TCCGAAAAC---------------------------------------------------------------------------GAATCATTTGTGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TAAAAATTA--------------------------------------------------------------------------------------------------------------------------ATGGAATCT--------------------------------------TG-------GA--------------------------------------------------------ATATTCTTTTTAA--------TGATTTTGCTGTGT----------T--------------TCAAAATTAAAAACATTT------CTAATG------------TTAATCAAAATCCCA--TCCCTTGCTATC-----------------------------AA---------------------------------------------------------------------------------------------------------------------------ATTTTAAATGAAAATAAATAAGTTACTTTGAGACATTTTAAGAAA-------------TAAA---TTTAG------------------------------------------------------------------------------------------GAASizeHit CountTotal NormTotal
No Reads
dp5
ACCTATCATT--------------------------------------------------------------G----------------------------------------------------------GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT---------------------------------------------------------------------------------------------CAAACTTTTTGAATATAT------------------------------------------------CATTAC--ACAATA--------------------------------------TAATACA-------------AAAG---TTTGAAAAA---------------------------------------------------------------------------GTAT----------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TCATTTTTG--------------------------------------------------------------------------------------------------------------------------GTATAATTATGAAATTAT---------------------------------------------------------------------------------------------------------------------GATTTATGGTTTAT----------T--------------TTATAAGTAT------TTAAAAACAATAAACTTTCTTACTTACTGGACAAAAGCCTTTAATTTTTGCATTTAACTTATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CAAAATTTG---------------------------------------------------------------------------------------------------------------------------------------------ATCTTTCAGAATTTTAAAATT-------AGAATTTTTCAAAATTTTCATTCTTTAAAATCTGTAAGTTGACAATCACTAATCGCTAATCA----------------------------------------------------------------------------------------------------------------------------CTAATTCAATTGTAT--------------TGTTTCTTATATAAAA------------------------------------------------------------------------------------------TTTGAAATTTTTACAACT-----------TC--------------------------------------CAAAAGA-------------AAAA---TT-GGGAAA-----------------------------AAATTCAAATCATCC-------------------------------AAATTTTAATTGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TAACCAGAC--------------AGA------------------------------------------------------------------------------------------------------------TACAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATTTTTATTTT--------------------------------------TTTTTATTTTAT------TATTTTTTGTATGAATTATAAAGAA--------------------------------CAAAGCACTCTTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------AATAA---------------------------------------------AATTAATTTAATTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG-------------AGAA---T---------------------AAA---------AATAA---------------------------------------------AATTAATT......28112.0012000200000000000000000000201300000011110000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG-------------AGAA---T---------------------AAA---------AATAA---------------------------------------------AATTAAT.......2713.003000000000000000000000000001000001010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG-------------AGAA---T---------------------AAA---------AATAA---------------------------------------------A.............2112.002001000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------AATAA---------------------------------------------A.............2811.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG-------------AGAA---T---------------------AAA---------AATAA---------------------------------------------AA............2211.001000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG-------------AGAA---T---------------------AAA---------AATAA---------------------------------------------..............20200.9519000001000000000000000000009700000002000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GAA--------------------------------CAAAGCACTCTTTTATTT------------------------------------------------------------CT--------------------------------------TAAT.........................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTATAAAGAA--------------------------------CAAAGCACTCTTTT.....................................................................................................................................................................................................................................2820.501000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAATTATAAAGAA--------------------------------CAAAGCACTC.........................................................................................................................................................................................................................................2330.331001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------AAT.............................................................25200.306000000000000000000000000004000100001000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG-------------AGAA---T---------------------AAA---------AATA............................................................19200.306000000000000000000000000150000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------A...............................................................24200.306000000000000000000000000202010000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GAA--------------------------------CAAAGCACTCTTTTATTT------------------------------------------------------------.....................................................................................................................................................................2140.251000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTGG-------------AGAA---T---------------------AAA---------AAT.............................................................18200.255000010000000000000000000000000000040000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---..................................................................................................26200.255000000000000000000000000203000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------AA..............................................................24200.204000000200000000000000000000100001000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------A...........................................................................20200.153001000000000000000000000000020000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AG.......................................................................................................24200.153000000000000000000000000000001000002000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AA..........................................................................22200.102000000000000000000000000000000000001010000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------.........................................................................................................22200.102000000000000000000000000001000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------AATA............................................................26200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------............................................................................19200.051000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TTT--------------------------------------TTTTTATTTTAT------TATTTTTTG...................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------A...............................................................26200.051000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGA......................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AA..........................................................................26200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------................................................................22200.051000000000000000000000000000000001000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------AA..............................................................25200.051000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCTTTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------............................................................................27200.051000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AG.......................................................................................................18200.051000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------AAT.............................................................20200.051000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTT------------------------------------------------------------CT--------------------------------------TAATTGG-------------AGAA---T---------------------AAA---------A...............................................................23200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
AGATATGAA------------------------------------------------------------------------------------------------------------------------------ATTTCTAAT-----------------------------------------------------------------------------------------------ATCTTCATACATATCTTTGGACATTCTGAAATTTAACTTCC----------T--------------TTAAAATTAT------------------------------------------ATCAAAGAAATCTCATTTGGATTAGTTTAG------TTTATATTGGTTGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTTCAAAC------------------------------------------------------------ACTTCAG------------------------------------------------------------------------------------------ATTTTACAAATTTGAT---------------------------------------------------------TGATT------------------------------------------------------------------------TTAATTT------GTTCCTCTTTT------------T---------------CT-----------------------------TTATTTAAATT-----------------------------------------------------------------------------------ATTTATAGCAATACAAATACAACAATTATCAAAAATA--------------------------------------TAAAAAA-------------AAAA---TACACACA------------------------------------------------------------------------------ATATTGC--TTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:36 AM