ID:

dsi_19976

 Coordinate:

3r:10202005-10202154 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.2 -29.2 -28.9

Flybase annnotation

CDS [3r_10202155_10202694_-]; exon [3r_10202155_10202694_-]; intron [3r_10201346_10202154_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCAGCCTGAACGGAGATTCCGGACCGGTGAACGGCGCTCTCAAAGCACGGGTTAGGCCATAGACCGTATTTGCGATTGTTCCGCTTCCGGTTCCCATTCGATTACGTTTTTCGAAATTGGAATTGATTGAATTTTTGGTTTTTGCATTAACACTTCGCACTTAGATGGAGATTGTCGAATGGACTATGATCCCTATAGCCATATCATTTAGATTAAAGAACCGCCTTAACTTCAAATCTGAAGACTTCCA
**************************************************....(((.((((.((((...(((((.((((..((..((((.....(((((((((.(((((........))))))))))))))..)))).....))...))))..))))).....)))).(((((((.....)))...)))).)))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
..............GATTCCGGACCGGTGAACGGCGCT.................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
...............ATTCCGGACCGGTGAACGG........................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................TGGAATTGATTGAATTTT................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................GGAGATTGACCAATGGAC.................................................................. 18 2 6 0.17 1 0 0 0 0 1 0 0
...............................................................................................................................TGAATTTTTGATTTTTGC......................................................................................................... 18 1 6 0.17 1 0 0 1 0 0 0 0
.......................................................................................................................GAAGTGAGTGAGTTTTTGGTTT............................................................................................................. 22 3 8 0.13 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................GCCTTATCATTTAGA...................................... 15 1 11 0.09 1 0 0 0 0 0 1 0
...............GTTCCGGAGCGGTGAAAGG........................................................................................................................................................................................................................ 19 3 12 0.08 1 0 0 0 1 0 0 0
......................................................................................................................................................................................................CCATATCATATATATTAA.................................. 18 2 20 0.05 1 0 0 0 0 0 0 1
....................GGCCCGGTAAACGGCG...................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

CGTCGGACTTGCCTCTAAGGCCTGGCCACTTGCCGCGAGAGTTTCGTGCCCAATCCGGTATCTGGCATAAACGCTAACAAGGCGAAGGCCAAGGGTAAGCTAATGCAAAAAGCTTTAACCTTAACTAACTTAAAAACCAAAAACGTAATTGTGAAGCGTGAATCTACCTCTAACAGCTTACCTGATACTAGGGATATCGGTATAGTAAATCTAATTTCTTGGCGGAATTGAAGTTTAGACTTCTGAAGGT
**************************************************....(((.((((.((((...(((((.((((..((..((((.....(((((((((.(((((........))))))))))))))..)))).....))...))))..))))).....)))).(((((((.....)))...)))).)))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.....................................................GCAGGTATCTGGCATAA.................................................................................................................................................................................... 17 2 3 0.33 1 1 0
...........................................................................................................................................................GAGTGAATCTACCTC................................................................................ 15 1 5 0.20 1 0 1

Generated: 04/24/2015 at 10:37 AM