ID:

dsi_19948

 Coordinate:

2l:8441378-8441694 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.7 -13.7 -13.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAAAATCAACAACCAAGTGCCGCCTAGCTGCTAAACAACATTAAAAGAAGTGGGAAATAAAATTTCTTGATTTATTTTCGCCAGACAAATGTCGATATAAACACACACTTACACACACACAGCGAAATCTCTTCGCTGCATTTGAATTATATTTATTGTTTGCCTTTTTGTTGCTTTCTATATGAGTTTTGAACATTGTTTATTTTCACATAAATTCTTCAGTTGAAAGTGAAAGCGGCGTCGCATCATCAGCGTCGTGTGAAATGTTGTTGCCGGCGAGTCGAGATCGCAGAATGGACAAGTTATGCTAATGGCCACGAAATATCCCACAAAAAACTGACAAACAAATGCAACAAATCGGACGAGAATCGGCATATCAAAAACCGAAAGCGGCAGTTATCTAGGCAAAATGCGCT
******************************************************************************************************************************************************************************************************************************************************.........(((((.......(((((....((((.......))))......)))))(((((....))))))))))........**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
......................................................................................................................................................................................................................................................TCATCAGCGTCGTGTGAAATGTTGT.................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CTAATGGCCACGAAATATCCC........................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................ACAAATCGGACGAGAATCGGCATAT....................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TTGCCGGCGAGTCGAGATCGCAGAA.......................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................TAAACCGAAAGCGGCAGTTATCTAGGC.......... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................ACGAATCGGACGAGAATCAGCATATCA..................................... 27 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................GTGAAAGCGGCGTCGCATCATCCGCGTC................................................................................................................................................................ 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................GCAACAAATCGGACGAGAATCGGCAT......................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................ACAAATCGGACGAGAATCGGCAT......................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................ATGGACAAGTTATGCTAATGGCC.................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCAGTTGAAAGTGAAAGCGGCGTCGCATA......................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................GAAATCTCTTCGCTGCATTTGAATT............................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GGCGAGTCGAGATCGCAGAATGGACAAGT................................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................TGCAACAAATCGGACGAGAATCGGCA.......................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................TCGCTGGATTCGGATTATATTT...................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................TATTGGTTGGCTTTTTGTTCCTT................................................................................................................................................................................................................................................ 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................................TACAACACTGACAAACAAATGCA................................................................ 23 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................AACTAATCGGACGATAATGGGC........................................... 22 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................TCGTGTGAAATGTGGTTGA............................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................CCTTTTTGTTGGTTTCT............................................................................................................................................................................................................................................. 17 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................TATGAGTTCCGAAGATTGTTT....................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................ATATTTATTGTTTGTCTTTTA....................................................................................................................................................................................................................................................... 21 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGAAAGCGACGTCGC............................................................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................GCCTTTTTGTTACTATCT............................................................................................................................................................................................................................................. 18 2 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CTTATTGTTGCTTTCT............................................................................................................................................................................................................................................. 16 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................AAAGTGGAAGCGACGTCGCT........................................................................................................................................................................... 20 3 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTGAACATTGGTTA...................................................................................................................................................................................................................... 16 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................ATTAAATGAAGTTGGAAAAAAA................................................................................................................................................................................................................................................................................................................................................................... 22 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................TCAAATGAAGTTGGAAATAAAA.................................................................................................................................................................................................................................................................................................................................................................. 22 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
......TGAACTACCAAGTGGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................................................................................................................GAACAAGAATCGGCAGATC...................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GTTTTTAGTTGTTGGTTCACGGCGGATCGACGATTTGTTGTAATTTTCTTCACCCTTTATTTTAAAGAACTAAATAAAAGCGGTCTGTTTACAGCTATATTTGTGTGTGAATGTGTGTGTGTCGCTTTAGAGAAGCGACGTAAACTTAATATAAATAACAAACGGAAAAACAACGAAAGATATACTCAAAACTTGTAACAAATAAAAGTGTATTTAAGAAGTCAACTTTCACTTTCGCCGCAGCGTAGTAGTCGCAGCACACTTTACAACAACGGCCGCTCAGCTCTAGCGTCTTACCTGTTCAATACGATTACCGGTGCTTTATAGGGTGTTTTTTGACTGTTTGTTTACGTTGTTTAGCCTGCTCTTAGCCGTATAGTTTTTGGCTTTCGCCGTCAATAGATCCGTTTTACGCGA
****************************************************************************************.........(((((.......(((((....((((.......))))......)))))(((((....))))))))))........****************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................................................................................................................................................................................................TAGCCTGCTCTTCGCC............................................ 16 1 2 1.50 3 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................CCAGCGTAGGAGTCGCAGCGC............................................................................................................................................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................CAACGGCAGCTCAGCTATAG................................................................................................................................ 20 2 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................ATATACTCTAAACTTGGAACT......................................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................TTTTGACTGTTTGATTA................................................................... 17 1 12 0.33 4 0 1 3 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................GCCTGCTTTTAGCCGTA......................................... 17 1 3 0.33 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TTTACCGGTGCTGCATAGGGTG...................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CGCCGCAGCGACGTAGTCCCA................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TTATGGGGTGTTTTTTTAGTGTT......................................................................... 23 3 3 0.33 1 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TAGCCTGCTCTTGGCC............................................ 16 1 9 0.33 3 0 2 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................................TTTTGACTGTTTGATT.................................................................... 16 1 20 0.25 5 0 0 0 0 1 0 2 2
.....................................TTGCAATTTTCATCACC........................................................................................................................................................................................................................................................................................................................................................................... 17 2 17 0.18 3 0 2 0 0 0 0 0 1
..........................................................................................................................................................................................................................................TCGCTGCAGCTTAGTAG...................................................................................................................................................................... 17 2 8 0.13 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TAGCCTGCTCTTGGCCATA......................................... 19 2 9 0.11 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................................................................CTAGCCTGCTCTTGGCCG........................................... 18 2 9 0.11 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................TAGCCTGCTCTGGGCC............................................ 16 2 20 0.10 2 0 0 0 0 0 0 2 0
......................................................................................................................................................................................................................................................................................................................................................................AGCCTGCTCTTGGCC............................................ 15 1 11 0.09 1 0 1 0 0 0 0 0 0
...........................................................................................................................GCTTTAGAGCAGGGCCGTA................................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................AAGACTCAAAACTTGTA............................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1
.......................................................................................................................TGTCGGTTTAGAGAA........................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0
TTTTTTAGTTGTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................................AGAGAAGCGACGCAA.................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................................................................................AGTTTTGGGCTTTCG......................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:8441328-8441744 - dsi_19948 CAAAAATCAACA--ACC---AA----------GTGCCGCCTAG----CTGCTAAACAACATTAAAA-GA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTC-GCCAGACA----AATGTCGATATAAA--C-----------------ACACACT-T-ACACA------CA--------CA--CA-----G-C----GAAAT-CT-CTTCGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CT--TTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGTCGTGTGAAATGTTGTTGCCGGCGAGTCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCACG-AA--AT-ATCCCACA------------------A-A--AAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAG-AATCGGCATAT-C-------AAA------------AACCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGC-------AGTTATCT----AGGCAAAATGCGCT
droSec2 scaffold_3:4208450-4208860 - CAAAAATCAACA--ACC---AA----------GTGCCGCCTAG----CTGCTAAACAACATTAAAA-AA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTC-GCCAGACA----AATGTCGATATAAA--C-----------------ACACAC----------------A--------CACAT---TT---C----GAAAT-CT-CTTTGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CT--TTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGTCGTGTGAAATGTTGTTGCCGGCGAGTCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCACG-AA--AT-ACCCCACA------------------A-A--GAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAG-AATCGGCATAT-C-------AAA------------AACCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGC-------AGTTATCT----AGGCAAAATGCGCT
dm3 chr2L:8735008-8735437 - CAAAAATCAACA--ACC---AA----------GTGCCGTCTAG----CTGCTAAACAACATTAAAAAAA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTC-GCCAGACA----AATGTCGATATAAA--C-----------------ACACTCT-T-TCACACACACACACACGAA--CA--CA-----G-T----GAATT-CT-CTTCGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CT--TTCTATAT------------------------GAGTT-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGTCGTGTGAAATGTTGTTGCCGGCGAGTCGAGATCA-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCACG-AA--AT-ACCCCATA------------------A-A--AAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAG-AATCGGCATAT-G-------AA-------------AACTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGC-------AGTTATCT----AGGCAAAATGCGCT
droEre2 scaffold_4929:9320858-9321318 - CAAAAGTCAACA--ACC---AA----------GTGCC---TAGCGAGCTGCTAAACAACATTAA---AA-A--GTG---GGAA---ATA------------------AACTTTCTTGATTTATT--TTGCGCCAGACATA--CATATCGATATAAA--C-----------------ACACGC----------------A--------CA--CA-----G-C----GAACT-CT-TTTCGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CT-TTTCTATAT------------------------GAGTT-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGT--CGTGAAATGTTGTTGCCGGCGAGTCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCAAG-AA--AT-ATCCCGTAAAA---------------A-A--AAACTGACAAACAAATGCAACAAATCGGACGAAAAATCGCACAAAAAGCTGGCAAACAAATGCAGCAAATCGGACGAAAAATCCAAA----------------------TT----------G-----AA-----------------------------------------------------------------------------AAAC-----AAA-------------------------------------------------------ATA-----AGCAGA-------AGTTATCT----AGGCAAAATGCGCT
droYak3 2L:11376522-11376951 - CAAAAATCAACA--ACC---AA----------GTGCG---TAGCTAACAGCTAAACAACATTAA---AA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTC-GCCAGACA----AATATCGATATAAA--C-----------------ATAC------TCGCACACACACACACAGACTCA--CA-----G-C----GAAATCCT-CTTCGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CC--TTCTATAT------------------------GAGTT-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGT--CGTGAAATGTTGTTGCCGGCGACTCGGGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCAAG-AA--AT-ATGCCGCA------------------AAA--AAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAA-AATCGAAAT-T-G-------AAG------------AACTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGA-------AGTTATCTGGGCAGGCAAAATGCGCT
droEug1 scf7180000409554:782889-783286 + AAAACAAAAACA--GAA---AA----------GTGCCACCC------CAGCTAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTGTTGATTTATT--TTG-GCCATATA----TATATATATATATA-------------------------------------------------------------------TGT-AT---A-TTCCGCT---GCATTTGA---------ATTATATTTATTGTT--TGACT-----------TT---TT------GTTG---CT--TTCTATAT------------------------GAGTT-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----T-CGT--CGTGAAATGCTGTTGCCGGCGAGCCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CTAAG-AG--ACTAA-AACCA------------------A-A--ATACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAG-AAACGGAATTT-T-------AAACTACAAATT----------G-----AA---------------------------------------------------------------------------------ACCTC-----------------------------------------------------------TAA-----GAAGAA------AG--ATAT----ATACAAAATGCGCT
droBia1 scf7180000301518:1042780-1043144 + CAAAG----------------------------------------------------------------------G---GAAA---ACA------------------AAACGTCCGGACCTGTT--TTG-GCCAGACG----AAAGTCGCCGTAGGAAC-----------------TCACAC---A-----------GACGC--------CTA-----G-C----AAACG--C-TGGTGCT---GCATTTGA---------ATTACATTTATTGTT--TGCTT-----------TT---T--------------CT--TTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTGGAAAGTGAAAGC--GGCGTC---G---CACCAT---------CGT--CGTGAAATGTGGTTGCCGGCGAGTCGACTGCG-------------------------------------------------------------CGGAACGGACAA---G--------------TTATGCTGA-TGG--------------------------------------CCAAG-AC--AT-TTCGC--G------------------AAA--AAACAGACTGT---------------------------------------------CGAATGCAAAAGCACGGGCGAT-ATTCG-AACGC-T-------AAGC-----CTT----------GAACCAAG---------------------------------------------------------------------------------GGCTC-----------------------------------------------------------CCAACA------CG------A--GGTCT----ACGCAAAATGCGCG
droTak1 scf7180000414527:17950-18340 + CC------------------GA----------GTGC----TA-------GCTAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTCTAGATTTATT--TTG-GCCAGACA----AAAATCGTTATAAA--CCA---------------ACACAC----ACGCA--------------------CA-----G---AC---CA---T-TTCTGCT---GCACTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CC--TTCTATAT------------------------GAGTTTTTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCAT---------CGT--CGTGAAATGTTGTTGCCGGCGAGTCGGGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CTAAAGAT--A--AT-CCCCG------------------A-A--AAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACAAA--AGCGGAATTT-C-------AAAC-----ATT----------GAATTTAG---------------------------------------------------------------------------------GGCTC-----------------------------------------------------------TCAAAA------AA------A--GACCT----AGGCAAAATGCGCT
droEle1 scf7180000491186:1568575-1568969 - CGAAA--------------------------------------------GCTAAACAACATAAA---AA-A--GTG---GGAA---ATA------------------AAATTTCTAGATTTATACGTTG-GACAGACA----AAAATCGTGATAAA--C-----------------ACACACAC-T-----------CACAC--------CT-----TAC--AT---ATT--T-TCCCGCT---GCATTTGA---------ATTATATTTATTGTT--TTCGT-----------TTATTTT------GTTGCTGCTTTTTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCATC---G---CATCATCATCGCAT-CGT--CGTGAAATGTTGTTGCCGGCGGTTTGAGATCG-------------------------------------------------------------CACAATGGACAAGTAG--------------TTATGCTAA-TGG--------------------------------------CTAAA-ACTTAT-ATGCCACA------------------AAA--CAACTGACAAA---------------------------------------------CAAATGCAGCAAATCGGAC---------------------------------ATT----------G-----AA-----------------------------------A---------------------------------------------ACCTT--------------------------TA-AAACA---------------------------------------CGAAC-----AATT----GGACAAAATGCGCT
droRho1 scf7180000779312:113720-114122 + CCGA----------------------------A---------------TGCTAAAAAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTCTAGATTTATT--TTG-GCCAGACA----AATATCGTTATATA--C-----------------ACATAA---A-----------AACAC--------CTACC--TAT--AT---AAT-TTGTTCCGCT---GCATTTGA---------ATTATATTTATTGTT-TTGCCT-----------T-----T------GTTG---CT--TTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CCTCATCA-----T-TGT--CGTGAAATGTTGTTGCCGGCGGGCCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCAAA-G----TTGTGCTACA--AAAAAAAAAAC-----------AA--AACAAA---------------------------------------------CAAATGCAGCAAATCGGACGGA-AATCAGAATTT-T-------AAAC-----ATTGAGA--------ATTGAA---------------------------------------------------------------------------------AGCCC-----------------------------------------------------------TAACAA------CA------A--TATTT----GGGCAAAATGCGCT
droFic1 scf7180000454102:310438-310827 + ACAAAATC--CA--AGC---GA----------G---------------TGCTAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTG-GCCAGACT----AATACCGTTATAAA--C-----------------ACACAC---A-----------GA-G------CACAC---CT---CTAC---GCC-TT-TTCCGCT---GCATTTGA---------ATTATATTTATTGTT--TTCGT-----------TTA--TT------TCTG---CT--T-----------------------------------T-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCAT---------CGT--CGTGAAATGT---TGCCGGCGAGCCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CTAAG-G----TTATGCTAAA--AAAAAAACAACAACCAA-ACGAAACTGACAAA---------------------------------------------CAAATGCAAGAAA-------------CGGAATTT-T-------AACC-----ATT----------GACTCGAG---------------------------------------------------------------------------------AGCC--------------------------------------------------------------------------CTG-AA----AAGC----GAACAAAATGCGCT
droKik1 scf7180000302412:875986-876336 - GAAGAAAAAAAAACACC---AA----------G---------------TGCTAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTCTAGATTTATT--T-A-GCCAGACA----AA--------------C-----------------ACACA----------------GA--------CACAT-------T--AT---AGT-TT-GTGCGCT---GCATTTGA---------ATTATATTTATTGTT--TTCCT-----------TTG--TT---TTTGTTG---CT--TTCTATAT------------------------GAGTTTTTTGA--ACATTGTTTA-TTTTCC---------CC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGT--GGCGTC---G---CA---------------------------------CCGGCGAGCTGAGATCG-------------------------------------------------------CATGGACAGAATGGACAA---G--------------TTATGCTAAATGCAAATGCTGA--------------------------------------------GCGAGA--GAAG---------------------------------------------------------------------------------AGAAATCT---------ACGGAAGCT-T-------GAAC-----ATT----------GAA-----------------------------------------------------------------------------------------------------------------CTTTTGAAGGGC---------------------------------------TAG-AA---AATCG----GGGCAAAATGCGCT
droAna3 scaffold_12916:10374386-10374740 - CCA---------------------------------------------CCCAAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATATTAAGATTTATT--T-A-GCTACAGA----GAG----AGAAAAA--CAAAAAAAAAACAAT--GAG----AT-T-----------GAAG------AACAT---TT---T----G-AG---T-TTCCGCT---GCATTTGA---------ATTATATTTATTGTT--TT--T-----------TT---AT------TTTG---CT--TTCTATAT---------------------ATTCGGTT-TTTGAAAACATTGTTTA-TTTTC----------GC---ATCG-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC-TCCCAGCACC---------------------------ACTGCCGGCCAGCTAAGATCG-------------------------------------------------------GACAAGCAGAATGGACAA---G--------------TTATGCAAA-TGA--ATGCCGA----------------------------------------------------------------------------------------------------------------------------------------ATCAAATCGAATT-G-AATCG-AATGT-G-------AAAA-----GTT----------G---------------------------------------------------------------------------------------------------------------------------------------------------AAATAGA--AAG-------CCA-C-A---ATTG----AAACAAAATGCGAC
droBip1 scf7180000396572:46445-46835 - CGCCCACCCATA-CACC---CA-T-T--GCAAG---------------TGCTAAACAACATA-----AA-A--GTG--GGCAA---ATA------------------AAATATTAAGATTTATT--T-A-GCCAGACATATAAATATCGAATTAAA--A-------------TTCGACACTCT-T------------GA--------CACTC----T---T----G-AG---T-TTCCGCT---GCATTTGA---------ATTTTATTTATTTTTGTTGCCT-----------TT---TG------TTTG---CT--TTCTATAT------------------------CAGTT--TTGA--ACATTGTTTA-TTTTC----------GC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G-T-CCACCTCA-----GACCT--CAAGCAATGTCGTTGCCGGCCAGCTAAGATCG-------------------------------------------------------------CGGAATGGACAA---G--------------TTATGCAAA-TGA--ATGCCGA---------------------------------------AT-A-GCG-------------------------------------------------------------------------------------ATGCCAA-----------C-AATCG-AATCTAGAAAAAAAAAAC-----GCT----------A---------------------------------------------------------------------------------------------------------------------------------------------------AAATAGA--AAG-------CCA-G-A---ACTG----AACCAAAATGCGCC
dp5 4_group5:919584-919741 + CACACACCCATA--CAT---ACACCTGTAAAAG---------------TGCTAAATAACATACAGAAAAATAGATG--GGGAA---ATA------------------AAGTCCCACGATTTATA--T-A-TCCATACG-----------AGCCAAA--CGAAC-------------ATAC------ATGCA--------------------------TAT--AT---AGT--T-TTCTGCT---GCATTTGA---------ATTATATTTATT-----TGCTT-----------TT---GT------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_5:5328626-5328932 + CACACACCCATA--CAT---ACACCTGTAAAAG---------------TGCTAAATAACATACAGAAAAATAGATG--GGGAA---ATA------------------AAGTCCCACGATTTATA--T-A-TCCATACG-----------ATCCAAA--CGAAC-------------ATAC------ATGCA--------------------------TAT--AT---AGT--T-TTCTGCT---GCATTTGA---------ATTATATTTATT-----TGCTTTTGTGATTTTTTTATTTTGCTTTGTTTG---CT--TTCCATAT------------------------CAGTTTTTTGA--ACATTGTTTA-TTTTCC---------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGCGCGACGCTGTCC---C----------------A--CGAGAAATGCTGTTGCCGGCGA-------------------------------------------------------------------------GAGCGGACAA---G--------------TTATGCTAA-TGA--------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004884:1171207-1171608 - CAAATAGCAAAA--ACC---AA----------C---------------ACCCACACACCATTAACG-----------------------------------------------------------------------------------AA--AAACAC-------------------ACACAT-T-----------GACGC--------CA-------------------TT-ATTTGTTGTAATCCCTGGCTTTTG-TTATTAACATTATTATT--TGACT-----------TT---TA------TTTG---AT--TT-------------------------------GGTT--TTG---------------TTCC-ATCTT-AGCAC---CTAACATTCTATCGCTAACGAATCGAAAGTGAAAGC--T-------------------------------------------------AACAACTCGCGATCG------------------------------------------------------------------TCGACGA---G--------------TTATGCTAA-TGATGATGATGACAAAAAACAGTCAGCAGCAACAAAAGTAT------------------------------------------------------------------------------------------------------------------C----------------------------TACC-----ATT----------GGGTCGAG----------------CAATGTGA-AACG-GATAAGCGGATAAACGGATAGACCGATAAGACCAAGCATAAAGAGGAAAAC-----AAAAAC---------------ACTTTTCAATACACATCAATACATGAGCAGCCGCAGCAGCAGCAG-------CAA-C----AAATT----GGCCACAATGCGTC
droVir3 scaffold_12723:4714231-4714626 - CAAAAAAA------------------------G------------------TAAAAAAAAAAAA---AA-A--GTGTGGAAAAATAATA------------------TAATTCCTGTATATACA--TCG-AC---TTT-----------ATCAAAA--AAAAA-------------ATA------------------------------------------------------------------------------------AATATATATTGCC-TTGCCT-----------TT---CG------TTTG---TT--TTAT------------------------------GTT-GTTAA--AAACTGTTTTGTTTTC--TTTTGCGCACCCAAAAA-ATTCTTT--------AGTTGAAAGTGAAAGC--TGCCTC---------------------------TGTGAAATGTTGTCGCCGGCAAATACGAAAAG--------AAACAACAAACTCATAAACACATAAAACATTATAATTAAAAATAAAAACAAAACACATCAGACAA---G--------------TTGTGCAT--TGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGAAATGTTTGCCCAAAATGTGTGCGCAA-----------------------------CTGACATAAAGCCTGAC-AAACAATTCGATTAAACATTGTTCAATGCG---------------------------------------CAG-CA----AATT----GGCCAAAATGCGTT
droMoj3 scaffold_6500:10684942-10685308 - CAGTTG------------CTA---------------------------AAGAAAACAACAAA-----TA-A--GTG---AC------------------------------TTGAAA--------------------------------AT--ATACAC-------------------ACACAT-A-----------TACGC--------------------AT---ATT-TT-ATACACA---ATATTTAACAAAAGCTTATCAACA-TTTTGTT------T-----------T------------GGTTTTATTCTTTCTAAACAAAAAAAAAAAAAAAAAAAAAACTCA----------------GTTTA-TTTTCTATTTTGCGCAACACAAAA-ATTCTTT--------AGTTGAAAGCGAAAGG-CAGCGCT---G---CA-----------G-CTC--TGTGAAATGTTGTCGCCGGCG--TCGCAACTC-------------------------------------------------------------AACAATAAACAAAAAGCATAAAAACAATAAAAACGCAAA-AGG------TG------------------------AAATGT------------------------------------------------------------------------------------------------------------------T----------------------------TGGC-----ACT----------AGGTCAACAAATCGAAGCGTT-------------------TAAA---------------------------------------------TTA-----------------------TTTATTCAATGCG---------------------------------------CAG-CA----AATT----GTCCAAAATGCGTC
droGri2 scaffold_15126:3660588-3661026 - TAAAAAATAATA--TTTGTTAA----------GGCACGCCCA------CACTTAGTAAAATTGAAA-AG-A--GCG---AAAA---ACAAACTAGAAGCGACATCAACAATTTAAAAATCTATATTTTA-TATAGAT---------------------------------------ATAT----------------------------------------------------------------------------------TCATATATATTTTT--TACTT-----------TT---CG---CATTTTG---AT--TTGTATAA------------------------CAA-----AAA--CCAATGTTTA-TTTTC--TTTTGGGCAT---ATAA-ATTCTTT--------AGTTGAAAGTGAAAGC--TGTGTC---G---TC------------------TGTGAAATGTTGTCACTAGCAAGTTGAAGCAAACAAAAAGA-----------------------------------TAAAAATAAAAAATAAACAACGCAGGCAA---G--------------TTATGCTAA-TTT--------------------------------------CTAGT-AT--------------------------------------------------------------------------------------------------------------------------------------------------T----------AGTT-------GCGATGTGTTGAGAAATGTTA-TCCA-AATGTGCACATAA-------------TAAAGCCACACACAAAAAGCCATAAAACCTTAAAGCACAATTCGATTAAACGTTGTTCAATGAC---------------------------------------CAG-CA----AATT----GGCCAAAATGCGTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAAAATCAACA--ACC---AA----------GTGCCGCCTAG----CTGCTAAACAACATTAAAA-GA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTC-GCCAGACA----AATGTCGATATAAA--C-----------------ACACACT-T-ACACA------CA--------CA--CA-----G-C----GAAAT-CT-CTTCGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CT--TTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGTCGTGTGAAATGTTGTTGCCGGCGAGTCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCACG-AA--AT-ATCCCACA------------------A-A--AAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAG-AATCGGCATAT-C-------AAA------------AACCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGC-------AGTTATCT----AGGCAAAATGCGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCA-----G-CGTCGTGTGAAATGTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAA-TGG--------------------------------------CCACG-AA--AT-ATCCC..........................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCGGACGAG-AATCGGCATAT-.....................................................................................................................................................................................................................................2511.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGGCGAGTCGAGATCG-------------------------------------------------------------CAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAATCGGACGAG-AATCGGCAT........................................................................................................................................................................................................................................2611.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCGGACGAG-AATCGGCAT........................................................................................................................................................................................................................................2311.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CC..........................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.................................................................................................................................................................................................................................GAAAT-CT-CTTCGCT---GCATTTGA---------ATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAGTCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAAATCGGACGAG-AATCGGCA.........................................................................................................................................................................................................................................2611.00100000000000010000
droSec2
CAAAAATCAACA--ACC---AA----------GTGCCGCCTAG----CTGCTAAACAACATTAAAA-AA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTC-GCCAGACA----AATGTCGATATAAA--C-----------------ACACAC----------------A--------CACAT---TT---C----GAAAT-CT-CTTTGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CT--TTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGTCGTGTGAAATGTTGTTGCCGGCGAGTCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCACG-AA--AT-ACCCCACA------------------A-A--GAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAG-AATCGGCATAT-C-------AAA------------AACCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGC-------AGTTATCT----AGGCAAAATGCGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGCGAGTCGAGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...................................................................................................................................................................................................................T---TT---C----GAAAT-CT-CTTTGCT---GCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATCGGACGAG-AATCGGC..........................................................................................................................................................................................................................................2211.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAAAGTGAAAGC--GGCGTC---G---..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AACCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGC-------AGTTATCT----AGGC..........2611.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAATCGGACGAG-AATCGGC..........................................................................................................................................................................................................................................2411.0010100
...........................................................................................................................................................................................................................................................A---------ATTATATTTATTGTT--TGCCT-----------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAATCGGACGAG-AATCGGC..........................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................................................AC----------------A--------CACAT---TT---C----GAAAT-CT-CT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------------------CAAATGCAACAAATCGGACG....................................................................................................................................................................................................................................................2311.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------------------CAAATGCAACAAATCGGACGA...................................................................................................................................................................................................................................................2311.0010100
dm3
CAAAAATCAACA--ACC---AA----------GTGCCGTCTAG----CTGCTAAACAACATTAAAAAAA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTC-GCCAGACA----AATGTCGATATAAA--C-----------------ACACTCT-T-TCACACACACACACACGAA--CA--CA-----G-T----GAATT-CT-CTTCGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CT--TTCTATAT------------------------GAGTT-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGTCGTGTGAAATGTTGTTGCCGGCGAGTCGAGATCA-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCACG-AA--AT-ACCCCATA------------------A-A--AAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAG-AATCGGCATAT-G-------AA-------------AACTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGC-------AGTTATCT----AGGCAAAATGCGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGAGATCA-------------------------------------------------------------CAGAATGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGACGAG-AATCGGCATAT-.....................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAATGTTGTTGCCGGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTCGAGATCA-------------------------------------------------------------CAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------------------CAAATGCAACAAATCGGA......................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGACGAG-AATCGGCA.........................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTTGTTGCCGGCGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATCGGACGAG-AATCGGC..........................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAAATCGGACGAG-AATCGG...........................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATGTTGTTGCCGGCGAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGC-------AGTTATCT----AGGC..........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGTCGAGATCA-------------------------------------------------------------CAGAATGGACAA---G--------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATCGGACGAG-AATCGGCATA.......................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCA-----G-CGTCGTGTGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AA----------GTGCCGTCTAG----CTGCTAAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA-----G-CGTCGTGTGAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATCA-------------------------------------------------------------CAGAATGGACAA---..............................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAG-AATCGGCATAT-G-------AA-------------AACTGA........................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAAA---------------------------------------------CAAATGCAACAAATCGGACG....................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGACGAG-AATCGGCATAT-G-------AA-------------AAC...........................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGC-------AGTTATCT----AGGCA.........2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCAACAAATCGGACG....................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGC-------AGTTATCT----AGG...........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATCGGACGAG-AATCG............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
CAAAAGTCAACA--ACC---AA----------GTGCC---TAGCGAGCTGCTAAACAACATTAA---AA-A--GTG---GGAA---ATA------------------AACTTTCTTGATTTATT--TTGCGCCAGACATA--CATATCGATATAAA--C-----------------ACACGC----------------A--------CA--CA-----G-C----GAACT-CT-TTTCGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CT-TTTCTATAT------------------------GAGTT-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGT--CGTGAAATGTTGTTGCCGGCGAGTCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCAAG-AA--AT-ATCCCGTAAAA---------------A-A--AAACTGACAAACAAATGCAACAAATCGGACGAAAAATCGCACAAAAAGCTGGCAAACAAATGCAGCAAATCGGACGAAAAATCCAAA----------------------TT----------G-----AA-----------------------------------------------------------------------------AAAC-----AAA-------------------------------------------------------ATA-----AGCAGA-------AGTTATCT----AGGCAAAATGCGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCGAGTCGAGATCG-------------------------------------------------------------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGCGAGTCGAGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAACAAATGCAACAAATCGGACGAA...............................................................................................................................................................................................................................................................................................2811.0010100000
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAAATCGGACGAAAA................................................................................................................................................................................................................................................2011.0010010000
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..................................................................................................................................................................................................................................AACT-CT-TTTCGCT---GCATTTGA---------ATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAATGCAACAAATCGGACGAA...............................................................................................................................................................................................................................................................................................2311.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TGG--------------------------------------CCAAG-AA--AT-ATCCCGT........................................................................................................................................................................................................................................................................................................................................................2011.0010000100
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droYak3
CAAAAATCAACA--ACC---AA----------GTGCG---TAGCTAACAGCTAAACAACATTAA---AA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTC-GCCAGACA----AATATCGATATAAA--C-----------------ATAC------TCGCACACACACACACAGACTCA--CA-----G-C----GAAATCCT-CTTCGCT---GCATTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CC--TTCTATAT------------------------GAGTT-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----G-CGT--CGTGAAATGTTGTTGCCGGCGACTCGGGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCAAG-AA--AT-ATGCCGCA------------------AAA--AAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAA-AATCGAAAT-T-G-------AAG------------AACTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGA-------AGTTATCTGGGCAGGCAAAATGCGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
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.....................................................................................................................................................................................................CACACAGACTCA--CA-----G-C----GAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------------------CAAATGCAACAAATCGGACGAA-.................................................................................................................................................................................................................................................2511.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCGACTCGGGATCG-------------------------------------------------------------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................................................................................................ACACACACACAGACTCA--CA-----G-C----G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................................................................................................................ATTGTT--TGCCT-----------TT---TT------GTTG---C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEug1
AAAACAAAAACA--GAA---AA----------GTGCCACCC------CAGCTAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTGTTGATTTATT--TTG-GCCATATA----TATATATATATATA-------------------------------------------------------------------TGT-AT---A-TTCCGCT---GCATTTGA---------ATTATATTTATTGTT--TGACT-----------TT---TT------GTTG---CT--TTCTATAT------------------------GAGTT-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCATCA-----T-CGT--CGTGAAATGCTGTTGCCGGCGAGCCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CTAAG-AG--ACTAA-AACCA------------------A-A--ATACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACGAG-AAACGGAATTT-T-------AAACTACAAATT----------G-----AA---------------------------------------------------------------------------------ACCTC-----------------------------------------------------------TAA-----GAAGAA------AG--ATAT----ATACAAAATGCGCTSizeHit CountTotal NormTotal
No Reads
droBia1
CAAAG----------------------------------------------------------------------G---GAAA---ACA------------------AAACGTCCGGACCTGTT--TTG-GCCAGACG----AAAGTCGCCGTAGGAAC-----------------TCACAC---A-----------GACGC--------CTA-----G-C----AAACG--C-TGGTGCT---GCATTTGA---------ATTACATTTATTGTT--TGCTT-----------TT---T--------------CT--TTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTGGAAAGTGAAAGC--GGCGTC---G---CACCAT---------CGT--CGTGAAATGTGGTTGCCGGCGAGTCGACTGCG-------------------------------------------------------------CGGAACGGACAA---G--------------TTATGCTGA-TGG--------------------------------------CCAAG-AC--AT-TTCGC--G------------------AAA--AAACAGACTGT---------------------------------------------CGAATGCAAAAGCACGGGCGAT-ATTCG-AACGC-T-------AAGC-----CTT----------GAACCAAG---------------------------------------------------------------------------------GGCTC-----------------------------------------------------------CCAACA------CG------A--GGTCT----ACGCAAAATGCGCGSizeHit CountTotal NormTotal
No Reads
droTak1
CC------------------GA----------GTGC----TA-------GCTAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTCTAGATTTATT--TTG-GCCAGACA----AAAATCGTTATAAA--CCA---------------ACACAC----ACGCA--------------------CA-----G---AC---CA---T-TTCTGCT---GCACTTGA---------ATTATATTTATTGTT--TGCCT-----------TT---TT------GTTG---CC--TTCTATAT------------------------GAGTTTTTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCAT---------CGT--CGTGAAATGTTGTTGCCGGCGAGTCGGGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CTAAAGAT--A--AT-CCCCG------------------A-A--AAACTGACAAA---------------------------------------------CAAATGCAACAAATCGGACAAA--AGCGGAATTT-C-------AAAC-----ATT----------GAATTTAG---------------------------------------------------------------------------------GGCTC-----------------------------------------------------------TCAAAA------AA------A--GACCT----AGGCAAAATGCGCTSizeHit CountTotal NormTotal
No Reads
droEle1
CGAAA--------------------------------------------GCTAAACAACATAAA---AA-A--GTG---GGAA---ATA------------------AAATTTCTAGATTTATACGTTG-GACAGACA----AAAATCGTGATAAA--C-----------------ACACACAC-T-----------CACAC--------CT-----TAC--AT---ATT--T-TCCCGCT---GCATTTGA---------ATTATATTTATTGTT--TTCGT-----------TTATTTT------GTTGCTGCTTTTTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCATC---G---CATCATCATCGCAT-CGT--CGTGAAATGTTGTTGCCGGCGGTTTGAGATCG-------------------------------------------------------------CACAATGGACAAGTAG--------------TTATGCTAA-TGG--------------------------------------CTAAA-ACTTAT-ATGCCACA------------------AAA--CAACTGACAAA---------------------------------------------CAAATGCAGCAAATCGGAC---------------------------------ATT----------G-----AA-----------------------------------A---------------------------------------------ACCTT--------------------------TA-AAACA---------------------------------------CGAAC-----AATT----GGACAAAATGCGCTSizeHit CountTotal NormTotal
No Reads
droRho1
CCGA----------------------------A---------------TGCTAAAAAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTCTAGATTTATT--TTG-GCCAGACA----AATATCGTTATATA--C-----------------ACATAA---A-----------AACAC--------CTACC--TAT--AT---AAT-TTGTTCCGCT---GCATTTGA---------ATTATATTTATTGTT-TTGCCT-----------T-----T------GTTG---CT--TTCTATAT------------------------GAGTT--TTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CCTCATCA-----T-TGT--CGTGAAATGTTGTTGCCGGCGGGCCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CCAAA-G----TTGTGCTACA--AAAAAAAAAAC-----------AA--AACAAA---------------------------------------------CAAATGCAGCAAATCGGACGGA-AATCAGAATTT-T-------AAAC-----ATTGAGA--------ATTGAA---------------------------------------------------------------------------------AGCCC-----------------------------------------------------------TAACAA------CA------A--TATTT----GGGCAAAATGCGCTSizeHit CountTotal NormTotal
No Reads
droFic1
ACAAAATC--CA--AGC---GA----------G---------------TGCTAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTCTTGATTTATT--TTG-GCCAGACT----AATACCGTTATAAA--C-----------------ACACAC---A-----------GA-G------CACAC---CT---CTAC---GCC-TT-TTCCGCT---GCATTTGA---------ATTATATTTATTGTT--TTCGT-----------TTA--TT------TCTG---CT--T-----------------------------------T-TTTGA--ACATTGTTTA-TTTTC----------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G---CATCAT---------CGT--CGTGAAATGT---TGCCGGCGAGCCGAGATCG-------------------------------------------------------------CAGAATGGACAA---G--------------TTATGCTAA-TGG--------------------------------------CTAAG-G----TTATGCTAAA--AAAAAAACAACAACCAA-ACGAAACTGACAAA---------------------------------------------CAAATGCAAGAAA-------------CGGAATTT-T-------AACC-----ATT----------GACTCGAG---------------------------------------------------------------------------------AGCC--------------------------------------------------------------------------CTG-AA----AAGC----GAACAAAATGCGCTSizeHit CountTotal NormTotal
No Reads
droKik1
GAAGAAAAAAAAACACC---AA----------G---------------TGCTAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATTTCTAGATTTATT--T-A-GCCAGACA----AA--------------C-----------------ACACA----------------GA--------CACAT-------T--AT---AGT-TT-GTGCGCT---GCATTTGA---------ATTATATTTATTGTT--TTCCT-----------TTG--TT---TTTGTTG---CT--TTCTATAT------------------------GAGTTTTTTGA--ACATTGTTTA-TTTTCC---------CC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGT--GGCGTC---G---CA---------------------------------CCGGCGAGCTGAGATCG-------------------------------------------------------CATGGACAGAATGGACAA---G--------------TTATGCTAAATGCAAATGCTGA--------------------------------------------GCGAGA--GAAG---------------------------------------------------------------------------------AGAAATCT---------ACGGAAGCT-T-------GAAC-----ATT----------GAA-----------------------------------------------------------------------------------------------------------------CTTTTGAAGGGC---------------------------------------TAG-AA---AATCG----GGGCAAAATGCGCTSizeHit CountTotal NormTotal
No Reads
droAna3
CCA---------------------------------------------CCCAAAACAACATA-----AA-A--GTG---GGAA---ATA------------------AAATATTAAGATTTATT--T-A-GCTACAGA----GAG----AGAAAAA--CAAAAAAAAAACAAT--GAG----AT-T-----------GAAG------AACAT---TT---T----G-AG---T-TTCCGCT---GCATTTGA---------ATTATATTTATTGTT--TT--T-----------TT---AT------TTTG---CT--TTCTATAT---------------------ATTCGGTT-TTTGAAAACATTGTTTA-TTTTC----------GC---ATCG-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC-TCCCAGCACC---------------------------ACTGCCGGCCAGCTAAGATCG-------------------------------------------------------GACAAGCAGAATGGACAA---G--------------TTATGCAAA-TGA--ATGCCGA----------------------------------------------------------------------------------------------------------------------------------------ATCAAATCGAATT-G-AATCG-AATGT-G-------AAAA-----GTT----------G---------------------------------------------------------------------------------------------------------------------------------------------------AAATAGA--AAG-------CCA-C-A---ATTG----AAACAAAATGCGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCG-AATGT-G-------AAAA-----GTT----------G---------------------------------------------------------------------------------------------------------------------------------------------------AAATAGA--A.........................................2711.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAGTGAAAGC--GGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
...........................................................................................................................................................................................................................................................................................................................................................ATTCGGTT-TTTGAAAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGC--GGCGTC-TCCCAGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT----------G---------------------------------------------------------------------------------------------------------------------------------------------------AAATAGA--AAG-------CCA-C-A---ATT...................2211.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC-TCCCAGCACC---------------------------ACTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAAAGC--GGCGTC-TCCCAGCACC---------------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGAAAGC--GGCGTC-TCCCAGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGC--GGCGTC-TCCCAGCACC---------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................T-A-GCTACAGA----GAG----AGAAAAA--CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................GC---ATCG-ATTCTTC--------AGTTGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------AAAA-----GTT----------G---------------------------------------------------------------------------------------------------------------------------------------------------AAATAGA--AAG-------C...............................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-G-------AAAA-----GTT----------G---------------------------------------------------------------------------------------------------------------------------------------------------AAATAGA--AAG-------CCA-............................2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATT-G-AATCG-AATGT-G-------AAAA-----GT..................................................................................................................................................................................................................2411.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGCTAAGATCG-------------------------------------------------------GACAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TGA--ATGCCGA----------------------------------------------------------------------------------------------------------------------------------------ATCAAATCGA.......................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-G-AATCG-AATGT-G-------AAAA-----GTT----------.......................................................................................................................................................................................................2211.001000010
................................................................................................................................................G----AGAAAAA--CAAAAAAAAAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501010000
droBip1
CGCCCACCCATA-CACC---CA-T-T--GCAAG---------------TGCTAAACAACATA-----AA-A--GTG--GGCAA---ATA------------------AAATATTAAGATTTATT--T-A-GCCAGACATATAAATATCGAATTAAA--A-------------TTCGACACTCT-T------------GA--------CACTC----T---T----G-AG---T-TTCCGCT---GCATTTGA---------ATTTTATTTATTTTTGTTGCCT-----------TT---TG------TTTG---CT--TTCTATAT------------------------CAGTT--TTGA--ACATTGTTTA-TTTTC----------GC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGC--GGCGTC---G-T-CCACCTCA-----GACCT--CAAGCAATGTCGTTGCCGGCCAGCTAAGATCG-------------------------------------------------------------CGGAATGGACAA---G--------------TTATGCAAA-TGA--ATGCCGA---------------------------------------AT-A-GCG-------------------------------------------------------------------------------------ATGCCAA-----------C-AATCG-AATCTAGAAAAAAAAAAC-----GCT----------A---------------------------------------------------------------------------------------------------------------------------------------------------AAATAGA--AAG-------CCA-G-A---ACTG----AACCAAAATGCGCCSizeHit CountTotal NormTotal
No Reads
dp5
CACACACCCATA--CAT---ACACCTGTAAAAG---------------TGCTAAATAACATACAGAAAAATAGATG--GGGAA---ATA------------------AAGTCCCACGATTTATA--T-A-TCCATACG-----------AGCCAAA--CGAAC-------------ATAC------ATGCA--------------------------TAT--AT---AGT--T-TTCTGCT---GCATTTGA---------ATTATATTTATT-----TGCTT-----------TT---GT------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................AAATAGATG--GGGAA---ATA------------------AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..CACACCCATA--CAT---ACACCTGTAAAAG---------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
droPer2
CACACACCCATA--CAT---ACACCTGTAAAAG---------------TGCTAAATAACATACAGAAAAATAGATG--GGGAA---ATA------------------AAGTCCCACGATTTATA--T-A-TCCATACG-----------ATCCAAA--CGAAC-------------ATAC------ATGCA--------------------------TAT--AT---AGT--T-TTCTGCT---GCATTTGA---------ATTATATTTATT-----TGCTTTTGTGATTTTTTTATTTTGCTTTGTTTG---CT--TTCCATAT------------------------CAGTTTTTTGA--ACATTGTTTA-TTTTCC---------AC---ATAA-ATTCTTC--------AGTTGAAAGTGAAAGCGCGACGCTGTCC---C----------------A--CGAGAAATGCTGTTGCCGGCGA-------------------------------------------------------------------------GAGCGGACAA---G--------------TTATGCTAA-TGA--------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................TTATA--T-A-TCCATACG-----------ATCCAAA--CGAAC-------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---C----------------A--CGAGAAATGCTGTTGCCGGCGA-------------------------------------------------------------------------GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTGTTGCCGGCGA-------------------------------------------------------------------------GAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droWil2
CAAATAGCAAAA--ACC---AA----------C---------------ACCCACACACCATTAACG-----------------------------------------------------------------------------------AA--AAACAC-------------------ACACAT-T-----------GACGC--------CA-------------------TT-ATTTGTTGTAATCCCTGGCTTTTG-TTATTAACATTATTATT--TGACT-----------TT---TA------TTTG---AT--TT-------------------------------GGTT--TTG---------------TTCC-ATCTT-AGCAC---CTAACATTCTATCGCTAACGAATCGAAAGTGAAAGC--T-------------------------------------------------AACAACTCGCGATCG------------------------------------------------------------------TCGACGA---G--------------TTATGCTAA-TGATGATGATGACAAAAAACAGTCAGCAGCAACAAAAGTAT------------------------------------------------------------------------------------------------------------------C----------------------------TACC-----ATT----------GGGTCGAG----------------CAATGTGA-AACG-GATAAGCGGATAAACGGATAGACCGATAAGACCAAGCATAAAGAGGAAAAC-----AAAAAC---------------ACTTTTCAATACACATCAATACATGAGCAGCCGCAGCAGCAGCAG-------CAA-C----AAATT----GGCCACAATGCGTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATACATGAGCAGCC....................................................1811.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------AACAACTCGCGATCG------------------------------------------------------------------TCGACGA---G--------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GC--T-------------------------------------------------AACAACTCGCGATCG------------------------------------------------------------------TCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGACCGATAAGACCAAG.............................................................................................................................1911.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAGTCAGCAGCAACAA..................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAAGACCAAGCATAAAGAG....................................................................................................................2111.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGTGA-AACG-GATAAGC..........................................................................................................................................................1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTCAGCAGCAACAAAA................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................................................................................................................................................................................AT-T-----------GACGC--------CA-------------------TT-ATTTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------TTATGCTAA-TGATGATGATGAC........................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGC--T-------------------------------------------------AACAACTCGCGATCG------------------------------------------------------------------TCGACGA---G--------------...............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGC--T-------------------------------------------------AACAACTCGCGATCG------------------------------------------------------------------TCGACGA---G--------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATGAGCAGCCGCAGCAGCAGCA........................................2611.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGC--T-------------------------------------------------AACAACTCGCGATCG------------------------------------------------------------------TCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGACCAAGCATAAAGAGGAA.................................................................................................................2311.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCGGATAAACGGATAGACC.........................................................................................................................................2211.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................CGAATCGAAAGTGAAAGC--T-------------------------------------------------AACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
................................................................................................................................................................................................................................................TGTAATCCCTGGCTTTTG-TTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
droVir3
CAAAAAAA------------------------G------------------TAAAAAAAAAAAA---AA-A--GTGTGGAAAAATAATA------------------TAATTCCTGTATATACA--TCG-AC---TTT-----------ATCAAAA--AAAAA-------------ATA------------------------------------------------------------------------------------AATATATATTGCC-TTGCCT-----------TT---CG------TTTG---TT--TTAT------------------------------GTT-GTTAA--AAACTGTTTTGTTTTC--TTTTGCGCACCCAAAAA-ATTCTTT--------AGTTGAAAGTGAAAGC--TGCCTC---------------------------TGTGAAATGTTGTCGCCGGCAAATACGAAAAG--------AAACAACAAACTCATAAACACATAAAACATTATAATTAAAAATAAAAACAAAACACATCAGACAA---G--------------TTGTGCAT--TGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGAAATGTTTGCCCAAAATGTGTGCGCAA-----------------------------CTGACATAAAGCCTGAC-AAACAATTCGATTAAACATTGTTCAATGCG---------------------------------------CAG-CA----AATT----GGCCAAAATGCGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCG---------------------------------------CAG-CA----AATT----GGC...........1911.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCCGGCAAATACGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCCAAAATGTGTGCGCAA-----------------------------CTGAC..................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCG---------------------------------------CAG-CA----AATT----GGCCAA........2111.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--TGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGAAATGTTTGCC....................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTGTCGCCGGCAAATACGAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCG---------------------------------------CAG-CA----AATT----GGCC..........1911.001000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACATAAAGCCTGAC-AAACA................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGCGCAA-----------------------------CTGACATAAAGCCT.........................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ATACA--TCG-AC---TTT-----------ATCAAAA--AAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGC--TGCCTC---------------------------TGTGAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTC---------------------------TGTGAAATGTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000010000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGAAAGC--TGCCTC---------------------------TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGACAA---G--------------TTGTGCAT--.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................ATACA--TCG-AC---TTT-----------ATCAAAA--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGTGAAAGC--TGCCTC---------------------------TGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTGCCCAAAATGTGTGCG.......................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCGGCAAATACGAAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCACCCAAAAA-ATTCTTT--------AGTTGAAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTGCGCAA-----------------------------CTGAC..................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................ATATTGCC-TTGCCT-----------TT---CG------TT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT--TGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGAAATGTTT.......................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAAAAACAAAACACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.402002000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATAAAAACAAAACAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAAAACAAAACACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.141001000000000000000000000000000000000000000000000000000000000000
.AAAAAAA------------------------G------------------TAAAAAAAAAAAA---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101000000000000000000100000000000000000000000000000000000000000000
droMoj3
CAGTTG------------CTA---------------------------AAGAAAACAACAAA-----TA-A--GTG---AC------------------------------TTGAAA--------------------------------AT--ATACAC-------------------ACACAT-A-----------TACGC--------------------AT---ATT-TT-ATACACA---ATATTTAACAAAAGCTTATCAACA-TTTTGTT------T-----------T------------GGTTTTATTCTTTCTAAACAAAAAAAAAAAAAAAAAAAAAACTCA----------------GTTTA-TTTTCTATTTTGCGCAACACAAAA-ATTCTTT--------AGTTGAAAGCGAAAGG-CAGCGCT---G---CA-----------G-CTC--TGTGAAATGTTGTCGCCGGCG--TCGCAACTC-------------------------------------------------------------AACAATAAACAAAAAGCATAAAAACAATAAAAACGCAAA-AGG------TG------------------------AAATGT------------------------------------------------------------------------------------------------------------------T----------------------------TGGC-----ACT----------AGGTCAACAAATCGAAGCGTT-------------------TAAA---------------------------------------------TTA-----------------------TTTATTCAATGCG---------------------------------------CAG-CA----AATT----GTCCAAAATGCGTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18201.15230000230
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATGTTGTCGCCGGCG--T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTCGCCGGCG--TCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
..............................................................................................................................................................C-------------------ACACAT-A-----------TACGC--------------------AT---ATT-TT-ATACAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------TGGC-----ACT----------AGGTCAACAAAT...........................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.204400000
droGri2
TAAAAAATAATA--TTTGTTAA----------GGCACGCCCA------CACTTAGTAAAATTGAAA-AG-A--GCG---AAAA---ACAAACTAGAAGCGACATCAACAATTTAAAAATCTATATTTTA-TATAGAT---------------------------------------ATAT----------------------------------------------------------------------------------TCATATATATTTTT--TACTT-----------TT---CG---CATTTTG---AT--TTGTATAA------------------------CAA-----AAA--CCAATGTTTA-TTTTC--TTTTGGGCAT---ATAA-ATTCTTT--------AGTTGAAAGTGAAAGC--TGTGTC---G---TC------------------TGTGAAATGTTGTCACTAGCAAGTTGAAGCAAACAAAAAGA-----------------------------------TAAAAATAAAAAATAAACAACGCAGGCAA---G--------------TTATGCTAA-TTT--------------------------------------CTAGT-AT--------------------------------------------------------------------------------------------------------------------------------------------------T----------AGTT-------GCGATGTGTTGAGAAATGTTA-TCCA-AATGTGCACATAA-------------TAAAGCCACACACAAAAAGCCATAAAACCTTAAAGCACAATTCGATTAAACGTTGTTCAATGAC---------------------------------------CAG-CA----AATT----GGCCAAAATGCGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------TAAAGCCACACACAAAAAGCCATA...............................................................................................................2511.00110

Generated: 05/18/2015 at 10:53 PM