ID:

dsi_19927

 Coordinate:

x:11088377-11088526 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.5 -24.3 -24.3

Flybase annnotation

CDS [x_11088527_11088711_-]; exon [x_11088527_11088711_-]; intron [x_11087264_11088526_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATTGGCCGGCACCAAACTCAAACTCAAACCCCAATCCCGAACCCCTTACCCAAACACTGATTAATATGGGTGATAAGAAAAGTGGGGAGAAATCGACTGCAATTGCTGTGTTGATACTCTTGTTTTGCTAAGCCCTTCAAGTTCGGTATATAATACATAATTGATTTTCAATATATATATAC
**************************************************************.....((((((..((...................)))))))).....(((((((((((..............)))))))..........))))(((.((((((.(((.....)))))))))..))).........***************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 O001
Testis
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR902008
ovaries
..............................................................TTAATGATTGGCCGGCACCA........................................................................................................................................................................ 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTTGATACTCTTGTTTTGCT..................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................CTATACAGTCTGCTGGAGAC............................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....TGACGACGAGGTCGAGGATCT................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................GAGACATGCAAGGTGATTGAT............................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................CTATACAGTCTGCTGGAGACA.............................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGTTGATACTCTTGTTTTGCT..................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...............TCGAGGATCTATACAGTCTGC...................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GCTTAATGATTGGCCGGCAC.......................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTTGATACTCTTGTTTTGCC..................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AACTCAAACTCAAACCCCAA.................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................AATTGCTGTGTTGATACTCTT............................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...ATGACGACGAGGTCGAGGATC.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TCTATACAGTCTGCTGGAGACATGCA.......................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................TGGGTGATAAGAAAAGTGG................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................TCTATACAGTCTGCTGGAGACATGC........................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................TGGAATTGCTCTGTTTATACTCT.............................................................. 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................TACAGTCTGCTGGAGACATGC........................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......ACGACGAGGTCGAGGATCT................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TGCTAAGCCCTTCAAGTTCGG.................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................ATCTATACAGTCTGCTGGAGA................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................ATTGATTGCTTAATGATTGGC................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................GTGGGGACACGCAAGGTGAT................................................................................................................................................................................................... 20 3 2 1.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0
......................TCTATACAGTCTGCTGGA.................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................CTGCTGGAGACATGCAAGC....................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................ATTGCTGTGTCGGTACTCT.............................................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GAAATCGACTGCAATTGCTGT......................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...ATGACGACGAGGTCGAGGATCC................................................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................ATACAGTCTGCTGGAGACATGC........................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................GGAGAGGTCGACTGCAATTG............................................................................. 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................TTGCTTAATGATTGGCCGGC............................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCAAGTTCGGTATATAATAC.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............TCGAGGATCTATACAGTCTGCTGGAGACA.............................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....GACGACGAGGTCGAGGATCT................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GCAATTGCTGTGTTGATACTCT.............................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................GGTGATAAGAAAAGTGGGGAG............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TTGATTGCTTAATGATTGGCCT.............................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAGAAATCGACTGCAATTGCT........................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AATTGCTGTGTTGATACTCT.............................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGTTGATACTCTTGTTTTGCC..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...ATGACGACGAGGTCGAGGATCT................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................ATACAGTCTGCTGGAGACATG............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................GATCTATACAGTCTGCTGGAG................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTGTTGATACTCTTGTTTTGC...................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GTGTTGATACTCTTGTTTTGCT..................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATTGGCCGGCACCAAACTC................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AGAGGTCGACTGCAATTGCGG.......................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGATTGCTTAATGAATCGTCG.............................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................ATACCGTGTGCTGTAGACA.............................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GGCTACTGCTGCTCCAGCTCCTAGATATGTCAGACGACCTCTGTACGTTCCACTAACTAACGAATTACTAACCGGCCGTGGTTTGAGTTTGAGTTTGGGGTTAGGGCTTGGGGAATGGGTTTGTGACTAATTATACCCACTATTCTTTTCACCCCTCTTTAGCTGACGTTAACGACACAACTATGAGAACAAAACGATTCGGGAAGTTCAAGCCATATATTATGTATTAACTAAAAGTTATATATATATG
*****************************************************.....((((((..((...................)))))))).....(((((((((((..............)))))))..........))))(((.((((((.(((.....)))))))))..))).........************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O002
Head
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
...................CCTAGATATGTCAGACGACCT.................................................................................................................................................................................................................. 21 0 1 50.00 50 44 6 0 0 0 0 0 0 0 0 0 0
....................CTAGATATGTCAGACGACCTC................................................................................................................................................................................................................. 21 0 1 43.00 43 36 7 0 0 0 0 0 0 0 0 0 0
.......GCTGCTCCAGCTCCTAGATAT.............................................................................................................................................................................................................................. 21 0 1 8.00 8 6 1 0 1 0 0 0 0 0 0 0 0
...........................................................................CCGTGGTTTGAGTTTGAGTTT.......................................................................................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTCGGGAAGTTCAAGCCATAT................................ 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
............................GTCAGACGACCTCTGTACGTT......................................................................................................................................................................................................... 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGGGAAGTTCAAGCCATATA............................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GCCGTGGTTTGAGTTTGAGTTTG......................................................................................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
....................CTAGATATGTCAGACGACCTCT................................................................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
GGCTACTGCTGCTCCAGCTCC..................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TGGGGTCAGTGCTTGGG.......................................................................................................................................... 17 2 9 1.22 11 0 0 0 0 2 7 0 0 0 1 1 0
........CTGCTCCAGCTCCTAGATATG............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTCGGGAAGTTCAAGCCAT.................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................GTCAGACGACCTCTGTAC............................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GAGTTTGGGGTTAGGGCTT............................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................TGGTTTGAGTTTGAGTTTGGG....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................CTAGATATGTCAGACGACCTT................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCGGGAAGTTCAAGCCATATAT.............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ACGTTAACGACACAACTA................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CGAATCGGGAAGTTCAGGC..................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................GTTCAAGCCATATATTATGTA........................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCGGGAAGTTCAAGCCATATA............................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............TCCAGCTCCTAGATATGTC........................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............CCAGCTCCTAGATATGTCAGA........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................TCCTAGATATGTCAGACGA..................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTAACGACACAACTATGAGAA............................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................TTCGGGAAGTTCAAGCCATA................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CCACTATTCTTTTCACCCCTC............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.GCTACTGCTGCTCCAGCTCCTA................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................CTAGATATGTCAGACGACCT.................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................CTCCTAGATATGTCAGACGACC................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................GACCTCTGTACGTTCCACTA................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............CCAGCTCCTAGATATGTCAGAC....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................TGTCAGACGACCTCTGTACGT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGCCATATATTATGTATTAAC................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................GAGTTTGAGTTTGGGGTTA................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................TCCTAGATATGTCAGACGACCT.................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACTAAAAGTTATATATATAT. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................CCTAGATATGTCAGACGACCTC................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTCCTCCCTCTTTTGCTGACG.................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................CTCCTAGATATGTCAGACGAC.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CCACTATTCTTTTCACCCCTCT............................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TGGGGTCAGTGCTTGGGG......................................................................................................................................... 18 2 5 0.40 2 0 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................ACCCCTAATTAGCTGACGT................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................GGCTGGGGGAACGGGTTTGTCA............................................................................................................................ 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................CTGGGGGAATGGCTTTGTCA............................................................................................................................ 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.........TGCTCCAGCTCCTCGAT................................................................................................................................................................................................................................ 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................CTTGGGGACTGGGGGTGTGAC........................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................CCACTAACTAACGGCTTA....................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
..CTACTGCTGCTCCAGA........................................................................................................................................................................................................................................ 16 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TTTCCCCCCTCTTTTTCTGAC................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................GGGTCAGTGCTTGGGG......................................................................................................................................... 16 2 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0
....................................................................................GAGTTGGAGGTTCGGGTTAG.................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................GTTTGGGGTTAGGGA............................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2
.GCTATTGCTGGTCCAGC........................................................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................GGCTTAGTGCTTGGGTAAT...................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0
.......GCTGCTCCAGATTATAGA................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................CCGTGGTTTGGGTTT................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11088327-11088576 - dsi_19927 CCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATTGGCCGGCA-----CCAAACTC---AAACTCAA------------------------ACCCCAA------TCCCGAACCCCTT--ACCCAAACACTGATTAATATGGGTGATAAGAAAA----GT-GGG-GAGAAATCGACTGCAATTGCTGT-GT-------------TGA--TACTCTTGTTTT---GCTAAGCCCTTCAAGTTCG------------GTATATAATACATAATTGATTTTCAATATATATATAC
droSec2 scaffold_36:382146-382303 - TCAA---------------------------------------------------------------------------------------------------------------------------ACCTCAA------TCCCGAACCCCTTAACCCAAAACACTGATTAATATGGGTGATAAAGAAAA---GT-GGG-GAGAAATCGACTGCAATTGCTGT-GT-------------TGA--TACTCTGGTTTT---GCTGAGCCCTTCAAGTTCG------------GTATATAAT----AATTAATTTTTAATATATATATAC
dm3 chrX:11708533-11708779 - CCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATTGGCCGG----------TTCCAA----ACTCAA------------------------ACCCCAA------TCCCGAACCCCTT--CCCTAAATTCTGATTAATATGGATGATAAGGAAA----GC-GGG-GGAAAATCGACTGCAATTGCTGT-GT----------TGTTGA--TACTCTTGTTTT---GCTAAGCGCTCCAAGTTCC------------GTATATAATACATAATTGATTTTTAATATATATATGT
droEre2 scaffold_4690:3491356-3491597 + CCGATGACGACGAGGTCGAGGATCTGTACAGCCTGCTGGAGACATGCAAGGTGATTGATTGCTTAACGATT----CG------CCCAAGCCCG--AAACCCCA------------------------ATCCCAA------CCTC-GACCCCTT--CCCCTAACTCTGATTATTACGGGTGATAAGAAAA----CT-GG--AGGAAATCGCCTGCCATTGCTA---T-------------TGA--TACTCTTGTTTT---GCTAAGCCTTCTCAATTCC------------GTATGTAATACACAATTGGTTCCTAACATATATGTAT
droYak3 X:14989915-14990136 + CCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATT----GG------CC----C----------CAA------------------------ATCCCAA------CCTC-AACCCATT--CCCCAAACTCTGATTAATACGGGTGATATGAAAA----CTTGGG-GGAAAATCAACTGCAATTGCTG---T-------------TGA--TACTCTTGTTTT---GTTAAGCCTTTCCATATTT------------GTGTA----------TTGGTTTTTAATATATACATTA
droEug1 scf7180000409181:48044-48239 - CCGATGATGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTATTTAATGATT----GG------TGTTGCCCCC--ATGCTACT------------------------TTACCAT------GGTA-TATTCCCC--CCTCAAACTCAGATTAAAGTTGCTGATAAGAAAA----TT-GGG-TTCAAATTGGCTGCAATTGCTACAGG-------------GGA--TACCCAGTCTTT---TTTAAG--------------------------------------------------------------
droBia1 scf7180000298389:1512467-1512615 - CCGACGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATT----GC------TGTGCCCCCCTT-----------------------------------CC-------------------GA--CCCCAATCTTAGATTAAAGTTGCTGATAAGAGGA----CT-GG---GGAAATCGACTGCAATTGCCA---T-----------------------------------------------------------------------------------------------------
droTak1 scf7180000414375:174040-174229 + CCGATGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATT----GT------TG---CCCCCTT-----------------------------------CC----------CG-CCGCA---AA--GCGAACTTAGATTAAAGTTGGTGATAAGAAAA----CC-AG---GCAAATCGACTGCAATTGCTA---T-------------TAA--TTCCCTATTATT---TCGGAGCCTTTCGAATTCC------------GAGTA--------------------------------
droEle1 scf7180000491023:453237-453421 + CCGATGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGATTGATTTTTGATTGG------TCTGCCCCCC---------------------------------------TCCCCTA-CCCC-CCGCCCAC--CCACAAACTCAGATTAAGCCCTTTGATAAGGAAAAGAAAA-AGA-GGCAATGGGGTTGCCATTGCTA---T-------------TGATATACCCAT--T-------------------------------------------------------------------------
droRho1 scf7180000777255:45192-45346 - CCGATGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTGTTTATT----GG------TGTGTC------------------------------------------------------------------CCCCAAACTCAGATTAAACCGGATGATAAGGAAA----CT-GA--AGAAACTAGGCTGCAAATGTTG---T-------------TGA--TACCCCTTATTT-----------------------------------------------------------------------
droFic1 scf7180000453277:175297-175555 - CCGATGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATTGTTCGTTCTCTGCCTAC---------------------------------------CGCCCCCTCCCACC-CC-TCGAA---AACCCCCGATTCCGATTAAAGCTGGTGATAAGGAAA----CTTGGGTGGGAAATCGATTGCA--TGGCA---C----GGTACTCCTTGT--TACATTTGTTTTATTGCT----GTTGCAAGTTCCAATAATCGAGTTGTATATATTAT--ATTTGACCACTGATATGTCTA---
droKik1 scf7180000302544:539287-539492 - CCGACGATGACGAGGTCGAGGATCTATACAGTCTGTTGGAGACATGCAAGGTGATTGATTGTT----GATT----GT------TGTTGC------------AAAACCTCTATTTTCCATTTACCAATCTCCCAATCCCACC-CC-TGGCT---ACCTGCAATGTCAGATTAAAGCGACTGATTAGAATGA---CT-GCTGGGAAAATTACCTGAACCTACTG---TCGAT------AG-TGTGATACCCTT----------------------------------------------------------------------------
droAna3 scaffold_13417:1489516-1489571 - CGGACGATGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396006:8109-8164 - CGGACGATGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XL_group1e:3918622-3918695 + CCGACGATGACGAGGTGGAGGATCTCTACAGTCTGCTGGAGACATGCAAGGTGATTGATTGATTG---ATTGGTTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_17:854587-854660 + CCGACGATGACGAGGTGGAGGATCTCTACAGTCTGCTGGAGACATGCAAGGTGATTGATTGATTG---ATTGGTTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004963:3669827-3669897 + CAGATGATGATGAAGTCGAGGATCTTTTTACTTTACTGGAGACATGCAAGGTGAATCTTTAGTTAAGGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:1569819-1569872 + CCGATGATGATGAAGTCGAGGATCTCTACAGTTTGCTGGAGACGTGCAAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:13447437-13447490 - CCGATGATGATGAAGTCGAGGATCTCTACAGTTTGCTGGAAACGTGCAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:8205875-8205928 - CCGATGACGATGAAGTCGAGGATCTTTACAGTTTGCTCGAAACGTGCAAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATTGGCCGGCA-----CCAAACTC---AAACTCAA------------------------ACCCCAA------TCCCGAACCCCTT--ACCCAAACACTGATTAATATGGGTGATAAGAAAA----GT-GGG-GAGAAATCGACTGCAATTGCTGT-GT-------------TGA--TACTCTTGTTTT---GCTAAGCCCTTCAAGTTCG------------GTATATAATACATAATTGATTTTCAATATATATATACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................TTAATGATTGGCCGGCA-----CCA................................................................................................................................................................................................................................................2013.00330000000000000000
................................................................................................................................................................................................................................GT-------------TGA--TACTCTTGTTTT---GCT.................................................................2012.00220000000000000000
.......................CTATACAGTCTGCTGGAGAC............................................................................................................................................................................................................................................................................................2012.00220000000000000000
....TGACGACGAGGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................2112.00220000000000000000
......................................GAGACATGCAAGGTGATTGAT............................................................................................................................................................................................................................................................................2112.00211000000000000000
.......................CTATACAGTCTGCTGGAGACA...........................................................................................................................................................................................................................................................................................2112.00220000000000000000
..............................................................................................................................................................................................................................T-GT-------------TGA--TACTCTTGTTTT---GCT.................................................................2112.00211000000000000000
...............TCGAGGATCTATACAGTCTGC...................................................................................................................................................................................................................................................................................................2112.00220000000000000000
............................................................GCTTAATGATTGGCCGGCA-----C..................................................................................................................................................................................................................................................2011.00101000000000000000
................................................................................................................................................................................................................................GT-------------TGA--TACTCTTGTTTT---GCC.................................................................2011.00110000000000000000
.......................................................................................AACTC---AAACTCAA------------------------ACCCCAA------...........................................................................................................................................................................................2011.00100000100000000000
......................................................................................................................................................................................................................AATTGCTGT-GT-------------TGA--TACTCTT............................................................................2111.00100001000000000000
...ATGACGACGAGGTCGAGGATC...............................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......................TCTATACAGTCTGCTGGAGACATGCA.......................................................................................................................................................................................................................................................................................2611.00100000000100000000
..............................................................................................................................................................................TGGGTGATAAGAAAA----GT-GG.................................................................................................................................1911.00100010000000000000
......................TCTATACAGTCTGCTGGAGACATGC........................................................................................................................................................................................................................................................................................2511.00100000000010000000
..........................TACAGTCTGCTGGAGACATGC........................................................................................................................................................................................................................................................................................2111.00110000000000000000
......ACGACGAGGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...............................................................................................................................................................................................................................................................T---GCTAAGCCCTTCAAGTTCG------------G....................................2111.00100010000000000000
.....................ATCTATACAGTCTGCTGGAGA.............................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....................................................ATTGATTGCTTAATGATTGGC.............................................................................................................................................................................................................................................................2111.00110000000000000000
......................TCTATACAGTCTGCTGGA...............................................................................................................................................................................................................................................................................................1811.00110000000000000000
................................CTGCTGGAGACATGCAAGC....................................................................................................................................................................................................................................................................................1911.00100100000000000000
..........................................................................................................................................................................................................GAAATCGACTGCAATTGCTGT-.......................................................................................................2111.00100010000000000000
...ATGACGACGAGGTCGAGGATCC..............................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.........................ATACAGTCTGCTGGAGACATGC........................................................................................................................................................................................................................................................................................2211.00100000010000000000
..........................................................TTGCTTAATGATTGGCCGGC.........................................................................................................................................................................................................................................................2011.00110000000000000000
............................................................................................................................................................................................................................................................................TTCAAGTTCG------------GTATATAATAC..........................2111.00110000000000000000
...............TCGAGGATCTATACAGTCTGCTGGAGACA...........................................................................................................................................................................................................................................................................................2911.00100000001000000000
.....GACGACGAGGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................2011.00110000000000000000
....................................................................................................................................................................................................................GCAATTGCTGT-GT-------------TGA--TACTCT.............................................................................2211.00110000000000000000
................................................................................................................................................................................GGTGATAAGAAAA----GT-GGG-GAG............................................................................................................................2111.00110000000000000000
......................................................TTGATTGCTTAATGATTGGCCT...........................................................................................................................................................................................................................................................2211.00110000000000000000
........................................................................................................................................................................................................GAGAAATCGACTGCAATTGCT..........................................................................................................2111.00101000000000000000
......................................................................................................................................................................................................................AATTGCTGT-GT-------------TGA--TACTCT.............................................................................2011.00101000000000000000
..............................................................................................................................................................................................................................T-GT-------------TGA--TACTCTTGTTTT---GCC.................................................................2111.00110000000000000000
...ATGACGACGAGGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.........................ATACAGTCTGCTGGAGACATG.........................................................................................................................................................................................................................................................................................2111.00100000001000000000
....................GATCTATACAGTCTGCTGGAG..............................................................................................................................................................................................................................................................................................2111.00100010000000000000
............................................................................................................................................................................................................................TGT-GT-------------TGA--TACTCTTGTTTT---GC..................................................................2211.00100010000000000000
.............................................................................................................................................................................................................................GT-GT-------------TGA--TACTCTTGTTTT---GCT.................................................................2211.00110000000000000000
....................................................................ATTGGCCGGCA-----CCAAACTC---........................................................................................................................................................................................................................................1911.00110000000000000000
droSec2
TCAA---------------------------------------------------------------------------------------------------------------------------ACCTCAA------TCCCGAACCCCTTAACCCAAAACACTGATTAATATGGGTGATAAAGAAAA---GT-GGG-GAGAAATCGACTGCAATTGCTGT-GT-------------TGA--TACTCTGGTTTT---GCTGAGCCCTTCAAGTTCG------------GTATATAAT----AATTAATTTTTAATATATATATACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................T---GCTGAGCCCTTCAAGTTCG------------G....................................2116.0060105
...................................................................................................................................................................................................................TGCAATTGCTGT-GT-------------TGA--TACT...............................................................................2111.0010001
....................................................................................................................................................................CTGATTAATATGGGTGATAAG..............................................................................................................................................2111.0010100
........................................................................................................................................................................................................GAGAAATCGACTGCAATTGCT..........................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................TGAGCCCTTCAAGTTCG------------GTAT.................................2111.0011000
..........................................................................................................................................................................................................GAAATCGACTGCAATTGCTG.........................................................................................................2011.0011000
......................................................................................................................................................................GATTAATATGGGTGATAAGA.............................................................................................................................................2011.0010001
..........................................................................................................................................................................................AAAA---GT-GGG-GAGAAATCGACT...................................................................................................................2111.0011000
......................................................................................................................................................................................................................AATTGCTGT-GT-------------TGA--TACTCTT............................................................................2111.0011000
.............................................................................................................................................................................................................ATCGACTGCAATTGCTGT-GT-------------........................................................................................2011.0011000
....................................................................................................................................................................CTGATTAATATGGGTGATAA...............................................................................................................................................2011.0011000
.................................................................................................................................................................................................................ACTGCAATTGCTGT-GT-------------TG......................................................................................1840.2510010
dm3
CCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATTGGCCGG----------TTCCAA----ACTCAA------------------------ACCCCAA------TCCCGAACCCCTT--CCCTAAATTCTGATTAATATGGATGATAAGGAAA----GC-GGG-GGAAAATCGACTGCAATTGCTGT-GT----------TGTTGA--TACTCTTGTTTT---GCTAAGCGCTCCAAGTTCC------------GTATATAATACATAATTGATTTTTAATATATATATGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................AGGATCTATACAGTCTGCTGG................................................................................................................................................................................................................................................................................................21117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGATCTATACAGTCTGCTG.................................................................................................................................................................................................................................................................................................19111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAGGATCTATACAGTCTGCTG.................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGGTCGAGGATCTATACAGTCTGCTGG................................................................................................................................................................................................................................................................................................2915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGGTCGAGGATCTATACAGTCTGCTG.................................................................................................................................................................................................................................................................................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAGGATCTATACAGTCTGCT..................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAGGATCTATACAGTCTGCTGG................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TGACGACGAGGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000
......................TCTATACAGTCTGCTGGAGACATGCAAT.....................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GACGAGGTCGAGGATCTATAC..........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ATGACGACGAGGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000
................CGAGGATCTATACAGTCTGCTGGA...............................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GACGACGAGGTCGAGGATCTATACAGT.......................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGTCTGCTGGAGACATGCAAG.....................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................GGATCTATACAGTCTGCTGGAGAC............................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGGTCGAGGATCTATACAGTCTGC...................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GATGACGACGAGGTCGAG...................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................GATGATAAGGAAA----GC-GGG-...............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................GAGGATCTATACAGTCTGCTGGAGA.............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAGGATCTATACAGTCTGCTGGAGA.............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACGAGGTCGAGGATCTATACAGTCTGC...................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CGACGAGGTCGAGGATCTATACAGTCTGC...................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGATGACGACGAGGTCGA....................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................ATCTATACAGTCTGCTGGAG..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................GAACCCCTT--CCCTAAATTCTGATT.............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........CGAGGTCGAGGATCTATA...........................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATACAGTCTGCTGGAGACATGCAAGC....................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGCTGGAGACATGCAAGGTGA.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..GATGACGACGAGGTCGAGGATCTT.............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AGTCTGCTGGAGACATGCAAGC....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CGAGGATCTATACAGTCTGC...................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGTCTGCTGGAGACATGCAA......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATACAGTCTGCTGGAGACATGC........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TCGAGGATCTATACAGTCTGCTGGA...............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ATGACGACGAGGTCGAGGA.................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTATACAGTCTGCTGGAGACAT..........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GGATCTATACAGTCTGCTGGA...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TAAGGAAA----GC-GGG-GGAAA..........................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.........ACGAGGTCGAGGATCTATA...........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATCTATACAGTCTGCTGGAGACATG.........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AAA----GC-GGG-GGAAAATCGACTGCAAT..............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................CTGCTGGAGACATGCAAG.....................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................ATCGACTGCAATTGCTGT-GT----------TGTT.......................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TCTATACAGTCTGCTGGAGACATG.........................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GATTAATATGGATGATAAAAC............................................................................................................................................2140.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000002000000000000000000000000000000000000000000000000
droEre2
CCGATGACGACGAGGTCGAGGATCTGTACAGCCTGCTGGAGACATGCAAGGTGATTGATTGCTTAACGATT----CG------CCCAAGCCCG--AAACCCCA------------------------ATCCCAA------CCTC-GACCCCTT--CCCCTAACTCTGATTATTACGGGTGATAAGAAAA----CT-GG--AGGAAATCGCCTGCCATTGCTA---T-------------TGA--TACTCTTGTTTT---GCTAAGCCTTCTCAATTCC------------GTATGTAATACACAATTGGTTCCTAACATATATGTATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................TACGGGTGATAAGAAAA----CT-GG--...............................................................................................................................2111.0011000000
droYak3
CCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATT----GG------CC----C----------CAA------------------------ATCCCAA------CCTC-AACCCATT--CCCCAAACTCTGATTAATACGGGTGATATGAAAA----CTTGGG-GGAAAATCAACTGCAATTGCTG---T-------------TGA--TACTCTTGTTTT---GTTAAGCCTTTCCATATTT------------GTGTA----------TTGGTTTTTAATATATACATTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................A------CCTC-AACCCATT--CCCCAAA.....................................................................................................................................................................2011.00101000000000
.................................................................................................................................................................................GTGATATGAAAA----CTTGGG-GGA............................................................................................................................2111.00101000000000
.......................CTATACAGTCTGCTGGAGAC............................................................................................................................................................................................................................................................................................2011.00100100000000
......ACGACGAGGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................................TGTTTT---GTTAAGCCTTTCC.......................................................1911.00101000000000
.................................TGCTGGAGACATGCAAGGTGT.................................................................................................................................................................................................................................................................................2111.00101000000000
.......................................................................................................................................................................................................................................................TCTTGTTTT---GTTAAGCCTT..........................................................1911.00101000000000
..................................................................................................................................................................................TGATATGAAAA----CTTGGG-GGAAAATCA......................................................................................................................2611.00100000010000
...................................................................................................................................................................................GATATGAAAA----CTTGGG-GGAAA..........................................................................................................................2111.00100000010000
droEug1
CCGATGATGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTATTTAATGATT----GG------TGTTGCCCCC--ATGCTACT------------------------TTACCAT------GGTA-TATTCCCC--CCTCAAACTCAGATTAAAGTTGCTGATAAGAAAA----TT-GGG-TTCAAATTGGCTGCAATTGCTACAGG-------------GGA--TACCCAGTCTTT---TTTAAG--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CCGACGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATT----GC------TGTGCCCCCCTT-----------------------------------CC-------------------GA--CCCCAATCTTAGATTAAAGTTGCTGATAAGAGGA----CT-GG---GGAAATCGACTGCAATTGCCA---T-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CCGATGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATT----GT------TG---CCCCCTT-----------------------------------CC----------CG-CCGCA---AA--GCGAACTTAGATTAAAGTTGGTGATAAGAAAA----CC-AG---GCAAATCGACTGCAATTGCTA---T-------------TAA--TTCCCTATTATT---TCGGAGCCTTTCGAATTCC------------GAGTA--------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCGATGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGATTGATTTTTGATTGG------TCTGCCCCCC---------------------------------------TCCCCTA-CCCC-CCGCCCAC--CCACAAACTCAGATTAAGCCCTTTGATAAGGAAAAGAAAA-AGA-GGCAATGGGGTTGCCATTGCTA---T-------------TGATATACCCAT--T-------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CCGATGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTGTTTATT----GG------TGTGTC------------------------------------------------------------------CCCCAAACTCAGATTAAACCGGATGATAAGGAAA----CT-GA--AGAAACTAGGCTGCAAATGTTG---T-------------TGA--TACCCCTTATTT-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCGATGACGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATTGATTGCTTAATGATTGTTCGTTCTCTGCCTAC---------------------------------------CGCCCCCTCCCACC-CC-TCGAA---AACCCCCGATTCCGATTAAAGCTGGTGATAAGGAAA----CTTGGGTGGGAAATCGATTGCA--TGGCA---C----GGTACTCCTTGT--TACATTTGTTTTATTGCT----GTTGCAAGTTCCAATAATCGAGTTGTATATATTAT--ATTTGACCACTGATATGTCTA---SizeHit CountTotal NormTotal
No Reads
droKik1
CCGACGATGACGAGGTCGAGGATCTATACAGTCTGTTGGAGACATGCAAGGTGATTGATTGTT----GATT----GT------TGTTGC------------AAAACCTCTATTTTCCATTTACCAATCTCCCAATCCCACC-CC-TGGCT---ACCTGCAATGTCAGATTAAAGCGACTGATTAGAATGA---CT-GCTGGGAAAATTACCTGAACCTACTG---TCGAT------AG-TGTGATACCCTT----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CGGACGATGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......ATGACGAGGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................1911.001100000
................CGAGGATCTATATAGTCTGCTGGAGA.............................................................................................................................................................................................................................................................................................2611.001010000
droBip1
CGGACGATGACGAGGTCGAGGATCTATATAGTCTGCTGGAGACATGCAAGGTGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCGACGATGACGAGGTGGAGGATCTCTACAGTCTGCTGGAGACATGCAAGGTGATTGATTGATTG---ATTGGTTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................TGATTGATTGATTG---ATTGG..............................................................................................................................................................................................................................................................19190.0510000000100
droPer2
CCGACGATGACGAGGTGGAGGATCTCTACAGTCTGCTGGAGACATGCAAGGTGATTGATTGATTG---ATTGGTTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................ATCTCTACAGTCTGCTGGA...............................................................................................................................................................................................................................................................................................1911.001100000
.........................CTACAGTCTGCTGGAGACATGCAAGCAC..................................................................................................................................................................................................................................................................................2811.001010000
.....................................................ATTGATTGATTG---ATTGGTT............................................................................................................................................................................................................................................................1990.111100000
droWil2
CAGATGATGATGAAGTCGAGGATCTTTTTACTTTACTGGAGACATGCAAGGTGAATCTTTAGTTAAGGTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........GATGAAGTCGAGGATCTTTTTACTTTA....................................................................................................................................................................................................................................................................................................2711.00110000
.....GATGATGAAGTCGAGGATCT..............................................................................................................................................................................................................................................................................................................2011.00110000
................CGAGGATCTTTTTACTTTA....................................................................................................................................................................................................................................................................................................1911.00101000
..GATGATGATGAAGTCGAGGATC...............................................................................................................................................................................................................................................................................................................2211.00100100
.....GATGATGAAGTCGAGGATCTTTTTACT.......................................................................................................................................................................................................................................................................................................2711.00100100
........GATGAAGTCGAGGATCTTTTTACT.......................................................................................................................................................................................................................................................................................................2411.00100010
......ATGATGAAGTCGAGGATCTTTTTAC........................................................................................................................................................................................................................................................................................................2511.00100100
...........................TTACTTTACTGGAGACATGCAAGC....................................................................................................................................................................................................................................................................................2411.00100100
droVir3
CCGATGATGATGAAGTCGAGGATCTCTACAGTTTGCTGGAGACGTGCAAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................CTACAGTTTGCTGGAGACG...........................................................................................................................................................................................................................................................................................1912.002000000010100000000000000000000000000000000000000000000000000000
.............AGTCGAGGATCTCTACAGTTTGCT..................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
.........................CTACAGTTTGCTGGAGACGT..........................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
.....GATGATGAAGTCGAGGATCTCT............................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
CCGATGATGATGAAGTCGAGGATCTCTACAGTTTGCTGGAAACGTGCAAGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCGATGACGATGAAGTCGAGGATCTTTACAGTTTGCTCGAAACGTGCAAGGTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:30 PM