ID:

dsi_19891

 Coordinate:

3l:7943353-7943502 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.2 -27.7 -27.6 -27.3

Flybase annnotation

CDS [3l_7943503_7944381_+]; exon [3l_7943503_7944381_+]; intron [3l_7942939_7943502_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACATTATTGCAAAATGTGCTTTTAATTGAGATGATCCCTTTTATATATGTAGATTTGAAATTTTTCTTCAAGTTGGCACTAATGGGACAAACGGTAGTTCTATCTTTTAAGCTTAATTTTCTATTCTATTTTAATATGCTTTTATTGGAATAATCATAATTACGATATGCTTAAAAGCAATTTAAATTGTTTTTCCTAGTCGCTAATTCTAAGCGTGGTTGGCTTGAATTTAGCAGAATGTCGTCGAGA
**************************************************.............................((...((((.(((((((........(((((((((..............((((((((((......))))))))))................)))))))))........))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M023
head
 SRR553487
NRT_0-2 hours eggs
..............................GATGATCCCTTTTATATATGTAGATT.................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0
........TGCAAAATGTGCTTTTAATTGAGA.......................................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGCTTGAATTTAGCAGAATGTCGTCGA.. 28 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AACTCTAAGCGTTGTTGGCCT........................ 21 3 1 1.00 1 0 1 0 0 0 0 0
..........................................TATATATGTAGATTTGAAATTTTTCT...................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................GTTGGCTTGAATTTAGCAGAATGTCGT..... 27 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................TTCAAGTTGGCACTAATGGGACAAAC............................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0
.......TTGCAAAATGTGCTTTTAATTGAGA.......................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................TCTAAGCGTGGTTGGCTTGAATTTAGC............... 27 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................AACTCTAAGCGTGCTTGG........................... 18 2 2 0.50 1 0 1 0 0 0 0 0
.............................................ATATGCAGATTTGAAACTTTT........................................................................................................................................................................................ 21 2 3 0.33 1 0 0 0 0 1 0 0
...........................................................................GGCACTAATCGGACTAAC............................................................................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 1 0
............................................................................GCACTAATTGGACAAA.............................................................................................................................................................. 16 1 5 0.20 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................AGCTGAATGTCGTCG... 15 1 16 0.19 3 0 0 0 3 0 0 0
........................................................................................................................................................................................................................................AGCAGAATGTCGGCG... 15 1 20 0.15 3 0 0 1 0 0 0 2
...................................................................................................................................................................................................................................AATTCAGCCGAAGGTCGTC.... 19 3 15 0.07 1 0 1 0 0 0 0 0
........................................ATTATATATGTAGATTTCA............................................................................................................................................................................................... 19 2 16 0.06 1 0 0 1 0 0 0 0
..............................................................................................................................................TTAATGGAATCAGCATAATT........................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

ATGTAATAACGTTTTACACGAAAATTAACTCTACTAGGGAAAATATATACATCTAAACTTTAAAAAGAAGTTCAACCGTGATTACCCTGTTTGCCATCAAGATAGAAAATTCGAATTAAAAGATAAGATAAAATTATACGAAAATAACCTTATTAGTATTAATGCTATACGAATTTTCGTTAAATTTAACAAAAAGGATCAGCGATTAAGATTCGCACCAACCGAACTTAAATCGTCTTACAGCAGCTCT
**************************************************.............................((...((((.(((((((........(((((((((..............((((((((((......))))))))))................)))))))))........))))))).))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..........................................ATATATACATCTAAACTT.............................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0
...................................................................................ACCCTGTTTGCCATCGA...................................................................................................................................................... 17 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................CGTCAAGATAGAAAATTCGAA....................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................TAACCTTATTAGTATTAA........................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................CAACGATTAAGATTCG................................... 16 1 3 0.67 2 0 2 0 0 0 0
..................................................................................................................................................................................................AGGCTCAGCGATTAAGTTT..................................... 19 2 2 0.50 1 0 0 0 0 1 0
...................................AGGGAATATATATACATGTAAAGT............................................................................................................................................................................................... 24 3 5 0.20 1 0 0 0 0 1 0
...................................................................................................................TTAAAAGATAAGATAA....................................................................................................................... 16 0 6 0.17 1 0 1 0 0 0 0
...................................................................................................................TTAAAAGATAAGATA........................................................................................................................ 15 0 7 0.14 1 0 1 0 0 0 0
...........................................................................CCGGGAGTACCCTGTTT.............................................................................................................................................................. 17 2 7 0.14 1 0 1 0 0 0 0
............................................................................................................................................................TATTAATGCTATACGA.............................................................................. 16 0 16 0.06 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:34 AM