ID:

dsi_19890

 Coordinate:

2l:20530510-20530659 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_20530660_20531030_-]; CDS [2l_20530660_20531030_-]; Antisense to exon [2l_20530194_20530536_+]; Antisense to three_prime_UTR [2l_20530338_20530536_+]; intron [2l_20526951_20530659_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAACGGACCACTGATCGTGGGACGGGAAGAACACAGTGCCGTTAACGCGGTAAGTTTAAATGTTAAAATGCCTACAATGCCGTAGTTCAGTATACTTACATTTTTATTATCCTCATTGTTTGCTTCCTTCTCCCCAGTCAAATTTGCAATTTTATAAACATTATAAGTTTTCTTAGTCGTTTTATTGATATCTTACTTAACTATGAAGTACAATTGGTTAGACTTATTATAAGTTCCAGAAATTGTATA
**************************************************.(((((....(((((((...((..((((((..(((((...(((....)))......)))))...))))))..))...........(((......))).........((((....((((....))))...))))..)))))))...)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.......ACCACTGATCGTGGGACGGGAAGAACAC....................................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0
...............TCGTGGGACGGGAAGAACACAGT.................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
.........CACTGATCGTGGGACGGGAA............................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
..................TGGGACGGGAAGAACACAGTGCCGT............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0
..........ACTGATCGTGGGACGGGAAGAACACA...................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.........CGCTGATCGTGGGACGGGA.............................................................................................................................................................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0
..........ACTGATCGTGGGACGGGAAGAAC......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0
............................AGAACACAGTGCCGTTAACGC......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
..................TGGGACGGGGAGAAC......................................................................................................................................................................................................................... 15 1 2 0.50 1 0 0 1 0 0 0 0
.........................................................................TACAATGTCGTAGATCAGTATG........................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0
......GATCACTGGTCGTGGGACT................................................................................................................................................................................................................................. 19 3 15 0.33 5 0 5 0 0 0 0 0
...............................................................................................................................................................................................................AGTTCAATTGGTTAGA........................... 16 1 8 0.13 1 0 0 0 0 0 0 1
................................................................................................................................................................................................................GTTCAATTGGTTAGA........................... 15 1 20 0.10 2 0 0 0 0 0 0 2
.............................................................................................................................................................................................................GTAGTTCAATTGGTTAGA........................... 18 2 11 0.09 1 0 0 0 0 0 0 1
.............................................ACGCGGTAGGGTTAAA............................................................................................................................................................................................. 16 2 12 0.08 1 0 0 1 0 0 0 0

Anti-sense strand reads

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------#############################################################################
TTTTGCCTGGTGACTAGCACCCTGCCCTTCTTGTGTCACGGCAATTGCGCCATTCAAATTTACAATTTTACGGATGTTACGGCATCAAGTCATATGAATGTAAAAATAATAGGAGTAACAAACGAAGGAAGAGGGGTCAGTTTAAACGTTAAAATATTTGTAATATTCAAAAGAATCAGCAAAATAACTATAGAATGAATTGATACTTCATGTTAACCAATCTGAATAATATTCAAGGTCTTTAACATAT
**************************************************.(((((....(((((((...((..((((((..(((((...(((....)))......)))))...))))))..))...........(((......))).........((((....((((....))))...))))..)))))))...)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR1275485
Male prepupae		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
............ACTAGCAGCCTGACATTCTT.......................................................................................................................................................................................................................... 20 3 4 3.75 15 13 2 0 0 0 0 0 0 0 0
.............CTAGCAGCCTGACATTCTT.......................................................................................................................................................................................................................... 19 3 12 2.25 27 19 7 0 0 0 0 0 1 0 0
............ACTAGCAGCCTGACCTTCTT.......................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ACTATAGAATGAATTGATAC............................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............CTAGCAGCCTGCCCTT............................................................................................................................................................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................CCTGCCCTTCTTGTGTCACGGCAATTGC.......................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............ACTAGCAGCCTGACCTTCTTGA........................................................................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............CTAGCAGCCTGACCTTCTT.......................................................................................................................................................................................................................... 19 2 3 0.67 2 1 1 0 0 0 0 0 0 0 0
.............................CTTGGGTCACGGCAAT............................................................................................................................................................................................................. 16 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................ATTCAAAAGAATCAGCAA.................................................................... 18 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0
........GGTGACTAGCAGCCTG.................................................................................................................................................................................................................................. 16 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................AGGAGTAACAAACGA............................................................................................................................. 15 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.........GTCACTAGCAGCCTGCCAT.............................................................................................................................................................................................................................. 19 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................GCGGGGTCAGTTTAA......................................................................................................... 15 1 7 0.29 2 0 0 2 0 0 0 0 0 0 0
.............CTAGCAGCCTGACATTCTTG......................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................AAGGAAGTGGGGTCA............................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.............CTAGCACCCTGACATCCTTG......................................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.............CTAGCAGCCTGACCATCTT.......................................................................................................................................................................................................................... 19 3 20 0.20 4 2 2 0 0 0 0 0 0 0 0
........GGAGACTAGCAGCCTG.................................................................................................................................................................................................................................. 16 2 20 0.15 3 0 0 0 0 0 0 0 3 0 0
......................................................................................................................................................AAAATACTTGTAATATT................................................................................... 17 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0
.........GTAACTAGCAGCCTGCCAT.............................................................................................................................................................................................................................. 19 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0
.............CTAGCAGCCTGGACTTCTT.......................................................................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0
..........TCACTAGCAGCCTGCCAT.............................................................................................................................................................................................................................. 18 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................AGGTAGAGAGGTCAGTCTA.......................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0
..........TCACTAGCAGCCTGCC................................................................................................................................................................................................................................ 16 2 17 0.06 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................ATATGAATGTAAAGAT............................................................................................................................................... 16 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGGGTGAATTGATACT........................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:20530460-20530709 - dsi_19890 AAA---ACGGACCACTGATCGTGGGACGGGAAGAACACAGTGCCGTTAACGCGGTAAGTTTAAATGTTAAAA------------TGCCTACAATGCCGTAG-TTC---------------------------------AGTATACTTACA----------------TT-----------------------------------------------------------------------------------------------------------------TTTATTATCCTCATTGTTTGCTTCCTTCTCCCCAG---TCAAATTTGCAATTTTATAAACA---------------------------------------------------------------------------------------------------------------------------------------------TTA--------------------------------------------------------------------T-------------------------------------------------AAGTTTTCTTAGTCGTTTTATT--GATATCTTACTTAACTATGAAGTACAATTGGTTAG-ACTTATTATAAGTTC--CAGAAATT-----GTAT----A
droSec2 scaffold_18:1017827-1018074 - AAA---ACGGACCACTGATCGTGGGACGGGAAGAACACAGTGCCGTTAACGCGGTAAGTTTAAATTTTAAAA------------TGCCTACAATGCCGTAG-TTC---------------------------------AGTATACTTACA----------------TT-----------------------------------------------------------------------------------------------------------------TT---TATCCTCATTGTTCGCTTCCTTCTCCCCAG---TCAAATTTGCAATTTTACAAACA--------------------------------------------------------------------------------------------------------------------------------------------TTAA--------------------------------------------------------------------T-------------------------------------------------AAGTTTTCTTAGTCGTTTTATT--GATATCTTACTTAACTATGAAGTACAATTGGTTAG-ACTTATTATAAGTTC--CAGAAATT-----GTAT----A
dm3 chr2L:21098850-21099086 - AAA---ACGGACCACTGATCGTGGGACGGGAAGAACACAGTGCCGTTAACGCGGTAAGTTTAAATTTTAAAA------------TGCCTACAATGCCGTAG-TTT---------------------------------AGTATACTTACA----------------TT-----------------------------------------------------------------------------------------------------------------TTTATTATCCTCATTGTTTGCTTCCATCTTCCCAG---TCAAATTTGCAATTTTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAGTCGTTTTATT--GAAATCTTACTCAACTATGAAGTACAATTGGTTAG-ACTTATACTAAGTTC--CAGAAATT-----GTAT----A
droEre2 scaffold_4845:3393149-3393420 + AAA---ACGGTCCACTGATCGTGGGACGGGAAGAACACAGTGCCGTCAACGCGGTAAGTTTAAA--------------------TGCTATCAATGCGGTTAT--CGTTTTATTTAATTTAGTTTGAGTAGT-------AGTATACTCA--------------------------------------------------------------------------------------------------------------------------TTTGAATCCATTT---TATTACCATCGTTAGCTTCTTTCTTCCCAG---TAAAATTTCCAAATTTATAAAGG--------------------------------------------------------------------------------------------------------------------------------------------TTTA--------------------------------------------------------------------T-------------------------------------------------AAGTTTTCTTAGTCGTTTTATT--GAAATCTTACTTAACTATGAAGTACAATTGGTTAG-ACTTATTATAAGTTT--CAGAAATT-----GTAT----A
droYak3 2R:1668592-1668878 + AAC---ACGGTCCACTGATTGTGGGACGGGAAGAACACAGTGCCGTCAGCGCGGTAAGTTAAAATTTTAAAA------------TGCTTTGAATGCGTTTAT--CTTTTTATTCAATTTA-----AGAAGTAATACAAAGTATATTAACA----------------CC---------------------------------------------------------------------------------------------------TTGTTTTAATCTATTT---TATTGCCATTGTCAGCTTCTTTCTACCCAG---TCAAAATTTTAAATTTAAAAGC----------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------------------------------------------------------C-------------------------------------------------AAGTGTTCTTAGTTGTTTTATT--GAAATCTTACTTAACTATGAAGTACAATTGGTAAG-ACTTATTATAAGTTT--CAGAAATG-----GTAT----A
droEug1 scf7180000409767:211978-212148 + AGA---GTGGGCCACTGATTGTGGGACGAGGACAACACAGTGCTGTCAATGCGGTGAGTTTAGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTTTCATAAAAG---------------------------------------------------------------------TA---------------------------------------------------------------------TTTA--------------------------------------------------------------------A-------------------------------------------------AA--GTTTTTAGTCGTTTTATT--GAAATCTTACTGATCTATGAAGTACAATTGGTTAA-ACTTATTATTAGTATGCCACATATT-----CAGT----A
droBia1 scf7180000302422:7005421-7005639 + AGA---GTGGCCCGCTAATCGTGGGACGAGGAGAGCACAGTTCTGTAAATGCGGTGAGTTGT--TTACTTTATAATTTTTTGGGTAT----------------------------------------------------------TATCAACACCACTTGTTGGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCAATTACAA-AGGGTATATTTTAT--------------------------------------------------------------------T-------------------------------------------------TAGCTTTCTTATTCGTTTTATT--GAAATCTTACATATCTATGAAGTACAATTGGTTAG-GCTTATTATTAGTTC--CAGAAGTT-----GTATAG-TA
droTak1 scf7180000415708:356772-357050 + AGA---GTGGCCCACTTATTGTGGGACGAGGAGAACACAGTTCTGTGAATGCGGTGAGTTGGAATTTTTAAA------------TTTATTTAATGCAGCAG--------------------------------------GCTTACTAAAA----------------CA---------------------------------------------------------------------------------------------------TT------------TTTCTT-----AATT------TTAATTT-------GAT-----------------------TTGGT-----------------TTGCTCATTTTCGTAATTATATCTATTAATCTAATCAGTTAAAAAATGTTCTATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT----------------GTAGATTTTTCTTAGTCGTTTTATT--GAATTCTTACTTATCTATGAAGTACAATTGGTTAG-GCTTATTATTAGTTT--CAGAAGTT-----CTATAA-TA
droEle1 scf7180000491186:1134608-1134926 - AGA---GTGGCCCTCTAATCGTGGGACGAGGAGAACACAGTGCCGTCAATGCGGTGAGTTTAATTTATAC------------------------------------------------------------------------------------TACTTATTAGCATTTTAAA---------------------------------------------------------TAATAATCTCTAAGTTTGCACTACACTTCGTTTAACATTATTTAAACATAATT---TATTCTCATAATCAA-TTCATTC-------GAT-----------------------TCGATTATTATTCCCAATGAATTTA---------------------------------------------------------------------------------------------CCCAATTTCAA----------------------------------------------------------------------------ACACAAATGATTCAGGATTTGGAAATGAGAAATTTCGT----------------TTATAA------AATTTGTTTTATT--GAATTCTTACAAATCTATGAAGTACAATTGGTTAG-ACTTAACATTAGATT---AGAAATT-----CTAT----G
droRho1 scf7180000771933:10737-11101 - AGA---GTGGCCCTTTAATCGTTGGACGAGGACATCACAGTGCTGTCGATGCGGTAAGCTTTATTTGTTTTA------------TGAT--------------------TTATTTTATTTACTT--------------------------------------------TTTTAACATCTGTTACCGATTTGTATCATCTGTATTTATTTTTTAACAATATTTTCTGCATGGAAATAAGCCTTAAATTAGCACCA-ACTTTTTTTAATATT---------------------ATCATCATTAATATTT-----------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------TTTGTAAATTTTTTTCATTACACTTGTCTTTTTAATTCATTAACCAACTTTTCGTTATTTAATTTACATAAA------AGAAATTAGTATCATGCAATTTCGT----------------ATATAA------AATTTGTTTTATT--GAATTCTTATAAAGCTATGAAGTACAATTGGTTAG-ACTTAATA-------------------------------
droFic1 scf7180000453842:577561-577833 - AGA---GTGGCCCTTTGATCGTGAGAGGAGGAGAACATAGTGCCGTCAATGCGGTAAGCTTTATTTATTC-G------------TTTATTTTATGCGGTTAGCTT--------------GGT------------------TAAAGTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA---------------------------------------------------------------------CACTTTTCGAATGATCTCTTATTAAGCACATTAACTGGTCAAATTGTAGTTTCCAATTGTATGCAGA------T----------------------------------------------------------------------------------------ACATATAAATTCGT----------------TTAGAGTTCTTTTAGTCGTTTTATT--GAAATCTTACATATCTATGAAGTACAATTGGTTAG-ACTTATTATTAGTTC---AGAAGTA-----ATAT----A
droKik1 scf7180000302643:130791-130995 - GCA---ATGGTCCGCTGATCATTGGGCGTGGAGAACATAGTGCTGTAAATGCGGTAAGTTTAATTTTATTT---------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTATT-----------------------------------------------------------------------TATCTCTCAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTGATCTTTCGCTTCATTAGA-GTTTCTTAGTCATTTTATTTGGAAATCTTACACATCTATGAAGTACAATTGGTTAGGACTTAGTATAAAGTT--TAGAAATT-----GTAGAATTA
droAna3 scaffold_12943:3640104-3640287 + GGA---GTGGTCCCCTAATCATTGGACGTGGAGAACACAGTGCAGTTAATGCGGTGAGTTTAGTTTTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAATTTAATTTATTTGAA--T------------------------------------------------------------------TGAATCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--GTTCTTAGTCGTTTTATT--AAAATCTTAAACATCTATGAAGTACAATTGGTTAG-GCTTATGATTAGTT----AGAAATGCTAATATAT----A
droBip1 scf7180000396433:524554-524699 + AGAGGAGTGGTCCTCTGATCATAGGCCGTGGAGAGCACAGTGCAGTTAATGCGGTGAGTTTAGGTTTTTGGA------------AAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTTATT--AAAATCTTAAACATCTATGAAGTACAATTGGTTAG-GCTTATAATAG-TT----AAAAATG-----CTAA----G
dp5 4_group1:4992976-4993069 + TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------------------------------------------------CAGTTCTCAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGTTTTTATT--GAAACCTTACGCATCTATGAAGTACAATGGGTTAG-ACGTATCTTAAGTTT---ATAATTA-----ATTT----G
droPer2 scaffold_5:224546-224665 - ATT--------------------------------------------------------TTAAAGTTTA-TA------------GGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGTATGAA---------------------------------------------------------------------CAGTTCTCAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGTTTTTATT--GAAACCTTACGCATCTATGAAGTACAATGGGTTAG-ACGTATCTTAAGTTT---ATAAATT--AATTTGT----T
droWil2 scf2_1100000004585:4906934-4907033 + AGA---GTGGTCCTCTGATAGTGGGACGTGGTACGCATAGTGCTGTCAATGCGGTAAGTTTTGATTCCTTAA------------AGATTAATATATATC-T-TTC---------------------------------TGTATACTAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:10524849-10524947 + TTG---GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATT------------------------------------------------------------------------------------------------------------------------------------------------TTTA--------------------------------------------------------------------T-------------------------------------------------TATATTTTGTTGTCTTTTTATT--GAAACCTTACGT-GCTATGAAGTACAAGTGGTTAG-ACTG-TCTTAAGTTT---A--GATT-----AAAT----A
droMoj3 scaffold_6500:19234237-19234294 + CTA---GCGGACCGCTGATTGTGGGACGTAGTGTGCATAGTTCAGTGGATGCGGTAAGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:8576643-8576717 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTAATTTTATT--GAAACCTTAAAT-GCTATGAAGTACAAGTGGTTAG-GCTTAAGATTAACTT-----AAATT-----ATAC----A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAA---ACGGACCACTGATCGTGGGACGGGAAGAACACAGTGCCGTTAACGCGGTAAGTTTAAATGTTAAAA------------TGCCTACAATGCCGTAG-TTC---------------------------------AGTATACTTACA----------------TT-----------------------------------------------------------------------------------------------------------------TTTATTATCCTCATTGTTTGCTTCCTTCTCCCCAG---TCAAATTTGCAATTTTATAAACA---------------------------------------------------------------------------------------------------------------------------------------------TTA--------------------------------------------------------------------T-------------------------------------------------AAGTTTTCTTAGTCGTTTTATT--GATATCTTACTTAACTATGAAGTACAATTGGTTAG-ACTTATTATAAGTTC--CAGAAATT-----GTAT----ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........ACCACTGATCGTGGGACGGGAAGAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200000000000000
..................TCGTGGGACGGGAAGAACACAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
............CACTGATCGTGGGACGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.....................TGGGACGGGAAGAACACAGTGCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.............ACTGATCGTGGGACGGGAAGAACACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.............ACTGATCGTGGGACGGGAAGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...............................AGAACACAGTGCCGTTAACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
droSec2
AAA---ACGGACCACTGATCGTGGGACGGGAAGAACACAGTGCCGTTAACGCGGTAAGTTTAAATTTTAAAA------------TGCCTACAATGCCGTAG-TTC---------------------------------AGTATACTTACA----------------TT-----------------------------------------------------------------------------------------------------------------TT---TATCCTCATTGTTCGCTTCCTTCTCCCCAG---TCAAATTTGCAATTTTACAAACA--------------------------------------------------------------------------------------------------------------------------------------------TTAA--------------------------------------------------------------------T-------------------------------------------------AAGTTTTCTTAGTCGTTTTATT--GATATCTTACTTAACTATGAAGTACAATTGGTTAG-ACTTATTATAAGTTC--CAGAAATT-----GTAT----ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................TCGTGGGACGGGAAGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
................................GAACACAGTGCCGTTAACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..............CTGATCGTGGGACGGGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................................................................................................................................................TT---TATCCTCATTGTTCGCTTCC.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
dm3
AAA---ACGGACCACTGATCGTGGGACGGGAAGAACACAGTGCCGTTAACGCGGTAAGTTTAAATTTTAAAA------------TGCCTACAATGCCGTAG-TTT---------------------------------AGTATACTTACA----------------TT-----------------------------------------------------------------------------------------------------------------TTTATTATCCTCATTGTTTGCTTCCATCTTCCCAG---TCAAATTTGCAATTTTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAGTCGTTTTATT--GAAATCTTACTCAACTATGAAGTACAATTGGTTAG-ACTTATACTAAGTTC--CAGAAATT-----GTAT----ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................TGGGACGGGAAGAACACAGTGCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000003000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000400100000000000000000000000
..........................CGGGAAGAACACAGTGCCGTTAACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GACCACTGATCGTGGGACGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................TCGTGGGACGGGAAGAACACAGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000200000000000000000000100000
.............ACTGATCGTGGGACGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GACCACTGATCGTGGGACGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................TGGGACGGGAAGAACACAGTGCCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGATCGTGGGACGGGAAGAACACAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACCACTGATCGTGGGACGGGAAGAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGATCGTGGGACGGGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACTGATCGTGGGACGGGAAGAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACTGATCGTGGGACGGGAAGAACACAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..A---ACGGACCACTGATCGTGGGACGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTAG-ACTTATACTAAGTTC--CAGAAA................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AGAACACAGTGCCGTTAACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGGGACGGGAAGAACACAGTGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACGGGAAGAACACAGTGCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......CGGACCACTGATCGTGGGACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GATCGTGGGACGGGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................TGGGACGGGAAGAACACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTGGGACGGGAAGAACACAGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTTTTATT--GAAATCTTAC.................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GATCGTGGGACGGGAAGAACACAGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........GGACCACTGATCGTGGGACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACTGATCGTGGGACGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CACTGATCGTGGGACGGGAAGAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCGTGGGACGGGAAGAACACAGTGCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........GACCACTGATCGTGGGACGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................GAACACAGTGCCGTTAACGCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................TGGGACGGGAAGAACACAGTGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.AA---ACGGACCACTGATCGTGGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CGGGAAGAACACAGTGCCGTTAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACGGGAAGAACACAGTGCCGTTAACGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CCACTGATCGTGGGACGGGAAGAACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AA---ACGGACCACTGATCGTGGGACGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTACAATTGGTTAG-ACT....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............ACTGATCGTGGGACGGGAAGAACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........CCACTGATCGTGGGACGGGAAGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAGTTC--CAGAAATT-----GTA......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........ACCACTGATCGTGGGACGGGAAGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGATCGTGGGACGGGAAGAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........GACCACTGATCGTGGGACGGGAAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACGGACCACTGATCGTGGGACGGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGACCACTGATCGTGGGACGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GAACACAGTGCCGTTAACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAA---ACGGTCCACTGATCGTGGGACGGGAAGAACACAGTGCCGTCAACGCGGTAAGTTTAAA--------------------TGCTATCAATGCGGTTAT--CGTTTTATTTAATTTAGTTTGAGTAGT-------AGTATACTCA--------------------------------------------------------------------------------------------------------------------------TTTGAATCCATTT---TATTACCATCGTTAGCTTCTTTCTTCCCAG---TAAAATTTCCAAATTTATAAAGG--------------------------------------------------------------------------------------------------------------------------------------------TTTA--------------------------------------------------------------------T-------------------------------------------------AAGTTTTCTTAGTCGTTTTATT--GAAATCTTACTTAACTATGAAGTACAATTGGTTAG-ACTTATTATAAGTTT--CAGAAATT-----GTAT----ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................GAACACAGTGCCGTCAACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0052201000
...............TGATCGTGGGACGGGAAGAACACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
........................GACGGGAAGAACACAGTGCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...................................................................................................................................................................................................................................................................................ATCCATTT---TATTACCATCGTTAGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
droYak3
AAC---ACGGTCCACTGATTGTGGGACGGGAAGAACACAGTGCCGTCAGCGCGGTAAGTTAAAATTTTAAAA------------TGCTTTGAATGCGTTTAT--CTTTTTATTCAATTTA-----AGAAGTAATACAAAGTATATTAACA----------------CC---------------------------------------------------------------------------------------------------TTGTTTTAATCTATTT---TATTGCCATTGTCAGCTTCTTTCTACCCAG---TCAAAATTTTAAATTTAAAAGC----------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------------------------------------------------------C-------------------------------------------------AAGTGTTCTTAGTTGTTTTATT--GAAATCTTACTTAACTATGAAGTACAATTGGTAAG-ACTTATTATAAGTTT--CAGAAATG-----GTAT----ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................AGAACACAGTGCCGTCAGCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............ACTGATTGTGGGACGGGAAGAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEug1
AGA---GTGGGCCACTGATTGTGGGACGAGGACAACACAGTGCTGTCAATGCGGTGAGTTTAGTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTTTCATAAAAG---------------------------------------------------------------------TA---------------------------------------------------------------------TTTA--------------------------------------------------------------------A-------------------------------------------------AA--GTTTTTAGTCGTTTTATT--GAAATCTTACTGATCTATGAAGTACAATTGGTTAA-ACTTATTATTAGTATGCCACATATT-----CAGT----ASizeHit CountTotal NormTotal
No Reads
droBia1
AGA---GTGGCCCGCTAATCGTGGGACGAGGAGAGCACAGTTCTGTAAATGCGGTGAGTTGT--TTACTTTATAATTTTTTGGGTAT----------------------------------------------------------TATCAACACCACTTGTTGGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCAATTACAA-AGGGTATATTTTAT--------------------------------------------------------------------T-------------------------------------------------TAGCTTTCTTATTCGTTTTATT--GAAATCTTACATATCTATGAAGTACAATTGGTTAG-GCTTATTATTAGTTC--CAGAAGTT-----GTATAG-TASizeHit CountTotal NormTotal
No Reads
droTak1
AGA---GTGGCCCACTTATTGTGGGACGAGGAGAACACAGTTCTGTGAATGCGGTGAGTTGGAATTTTTAAA------------TTTATTTAATGCAGCAG--------------------------------------GCTTACTAAAA----------------CA---------------------------------------------------------------------------------------------------TT------------TTTCTT-----AATT------TTAATTT-------GAT-----------------------TTGGT-----------------TTGCTCATTTTCGTAATTATATCTATTAATCTAATCAGTTAAAAAATGTTCTATAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT----------------GTAGATTTTTCTTAGTCGTTTTATT--GAATTCTTACTTATCTATGAAGTACAATTGGTTAG-GCTTATTATTAGTTT--CAGAAGTT-----CTATAA-TASizeHit CountTotal NormTotal
No Reads
droEle1
AGA---GTGGCCCTCTAATCGTGGGACGAGGAGAACACAGTGCCGTCAATGCGGTGAGTTTAATTTATAC------------------------------------------------------------------------------------TACTTATTAGCATTTTAAA---------------------------------------------------------TAATAATCTCTAAGTTTGCACTACACTTCGTTTAACATTATTTAAACATAATT---TATTCTCATAATCAA-TTCATTC-------GAT-----------------------TCGATTATTATTCCCAATGAATTTA---------------------------------------------------------------------------------------------CCCAATTTCAA----------------------------------------------------------------------------ACACAAATGATTCAGGATTTGGAAATGAGAAATTTCGT----------------TTATAA------AATTTGTTTTATT--GAATTCTTACAAATCTATGAAGTACAATTGGTTAG-ACTTAACATTAGATT---AGAAATT-----CTAT----GSizeHit CountTotal NormTotal
No Reads
droRho1
AGA---GTGGCCCTTTAATCGTTGGACGAGGACATCACAGTGCTGTCGATGCGGTAAGCTTTATTTGTTTTA------------TGAT--------------------TTATTTTATTTACTT--------------------------------------------TTTTAACATCTGTTACCGATTTGTATCATCTGTATTTATTTTTTAACAATATTTTCTGCATGGAAATAAGCCTTAAATTAGCACCA-ACTTTTTTTAATATT---------------------ATCATCATTAATATTT-----------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------TTTGTAAATTTTTTTCATTACACTTGTCTTTTTAATTCATTAACCAACTTTTCGTTATTTAATTTACATAAA------AGAAATTAGTATCATGCAATTTCGT----------------ATATAA------AATTTGTTTTATT--GAATTCTTATAAAGCTATGAAGTACAATTGGTTAG-ACTTAATA-------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGA---GTGGCCCTTTGATCGTGAGAGGAGGAGAACATAGTGCCGTCAATGCGGTAAGCTTTATTTATTC-G------------TTTATTTTATGCGGTTAGCTT--------------GGT------------------TAAAGTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA---------------------------------------------------------------------CACTTTTCGAATGATCTCTTATTAAGCACATTAACTGGTCAAATTGTAGTTTCCAATTGTATGCAGA------T----------------------------------------------------------------------------------------ACATATAAATTCGT----------------TTAGAGTTCTTTTAGTCGTTTTATT--GAAATCTTACATATCTATGAAGTACAATTGGTTAG-ACTTATTATTAGTTC---AGAAGTA-----ATAT----ASizeHit CountTotal NormTotal
No Reads
droKik1
GCA---ATGGTCCGCTGATCATTGGGCGTGGAGAACATAGTGCTGTAAATGCGGTAAGTTTAATTTTATTT---------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTATT-----------------------------------------------------------------------TATCTCTCAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTGATCTTTCGCTTCATTAGA-GTTTCTTAGTCATTTTATTTGGAAATCTTACACATCTATGAAGTACAATTGGTTAGGACTTAGTATAAAGTT--TAGAAATT-----GTAGAATTASizeHit CountTotal NormTotal
No Reads
droAna3
GGA---GTGGTCCCCTAATCATTGGACGTGGAGAACACAGTGCAGTTAATGCGGTGAGTTTAGTTTTTAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAATTTAATTTATTTGAA--T------------------------------------------------------------------TGAATCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--GTTCTTAGTCGTTTTATT--AAAATCTTAAACATCTATGAAGTACAATTGGTTAG-GCTTATGATTAGTT----AGAAATGCTAATATAT----ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCTATGAAGTACAATTGGTTAG-.......................................2611.001001000
................................GAACACAGTGCAGTTAATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
AGAGGAGTGGTCCTCTGATCATAGGCCGTGGAGAGCACAGTGCAGTTAATGCGGTGAGTTTAGGTTTTTGGA------------AAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTTATT--AAAATCTTAAACATCTATGAAGTACAATTGGTTAG-GCTTATAATAG-TT----AAAAATG-----CTAA----GSizeHit CountTotal NormTotal
No Reads
dp5
TAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------------------------------------------------CAGTTCTCAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGTTTTTATT--GAAACCTTACGCATCTATGAAGTACAATGGGTTAG-ACGTATCTTAAGTTT---ATAATTA-----ATTT----GSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATT--GAAACCTTACGCATCTATGAAG.....................................................2813.0030000000300
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACAATGGGTTAG-ACGTA..................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................AA---------------------------------------------------------------------CAGTTCTCAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTG.....................................................................................2011.0010100000000
droPer2
ATT--------------------------------------------------------TTAAAGTTTA-TA------------GGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATGTATGAA---------------------------------------------------------------------CAGTTCTCAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTGTTTTTATT--GAAACCTTACGCATCTATGAAGTACAATGGGTTAG-ACGTATCTTAAGTTT---ATAAATT--AATTTGT----TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGA---GTGGTCCTCTGATAGTGGGACGTGGTACGCATAGTGCTGTCAATGCGGTAAGTTTTGATTCCTTAA------------AGATTAATATATATC-T-TTC---------------------------------TGTATACTAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTG---GC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTTATT------------------------------------------------------------------------------------------------------------------------------------------------TTTA--------------------------------------------------------------------T-------------------------------------------------TATATTTTGTTGTCTTTTTATT--GAAACCTTACGT-GCTATGAAGTACAAGTGGTTAG-ACTG-TCTTAAGTTT---A--GATT-----AAAT----ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GCTATGAAGTACAAGTGGTT..........................................2112.002000000000000000000000000000010100000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTAG-ACTG-TCTTAAG...........................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTTTTTATT--GAAACCTTACGT-GC............................................................2711.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAG-ACTG-TCTTAAGTTT---.....................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTTACGT-GCTATGAAGT....................................................2111.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTA---GCGGACCGCTGATTGTGGGACGTAGTGTGCATAGTTCAGTGGATGCGGTAAGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTGTAATTTTATT--GAAACCTTAAAT-GCTATGAAGTACAAGTGGTTAG-GCTTAAGATTAACTT-----AAATT-----ATAC----ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTACAAGTGGTTAG-GCTTA..................................2111.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAT-GCTATGAAGTACAAGT..............................................2111.00110
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGTTAG-GCTTAAGATTA............................2111.00101

Generated: 05/19/2015 at 11:52 AM