ID:

dsi_19884

 Coordinate:

3l:15725058-15725207 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-4.0

Flybase annnotation

five_prime_UTR [3l_15724915_15725057_+]; exon [3l_15724915_15725057_+]; intron [3l_15725058_15725575_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGTTTAAAATGCGCCCCAGTGCACCGAGTTTGAACGCAAAATGAATTGAAGTGAGTGCATCTGCCGCAGGGCCTAGAAAATTTCCCCCGACATTGCAGGCTGTACAAAACTGATACTGAAACACACGCACACAGTCACACAGACACGGACTTGGGTTTATGCCACCACCCGCTGGCCACTAAAGTAGAAATTACTAATACTACGGCTGGCACGATGCTCCATATTGCCACTCGAGCCATGTACAAGTTGC
************************************************************************************************.((((((...........................))))))...............*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 O001
Testis
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
.....AAAATGCGCCCCAGTG..................................................................................................................................................................................................................................... 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GAATTGAAGTGAGTGCATCTG........................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CACAGTCACACAGACACGGACT................................................................................................... 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
................................................................................................AGGCTGTACAAAACTGATACT..................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
....................................CAAAATGAATTGAAGTGAGTG................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTACTAATACTACGGCTGGCA....................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTTATGCCACCACCCGCTGGC.......................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................AATTACTAATACTACGGCTGG......................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................GCAAAATGAATTGAAGTGAG................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGCTCCATATTGCCACTCGAG............... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TATTGCCACTCGAGCCATGTACA...... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................CTAGAAAATTTCCCCCGAC............................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........GCGCCCCAGTGCACCGAG.............................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................AATGAATTGAAGTGAGTG................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........ATGCGCCCCAGTGCACCG................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................ACAGTCACACAGACACGGACT................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................TTTGAACGCAAAATGAATTG.......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................AGGACTTGGGTTTATGCCACC.................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGCACGGACTTGGGTT............................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGCACGGACTTGGGT.............................................................................................. 15 1 17 0.24 4 4 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................CCGAAGGGCCTAGAA............................................................................................................................................................................ 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TTACAGGCTGTACGAAACGG.......................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................CGCACACGGTCGCACGGACACG....................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................ACAGGCACGGACTTG................................................................................................. 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ACTGACACTGAAAGACGCGC.......................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................TTGAATGCAAAATAAATTGGAG....................................................................................................................................................................................................... 22 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................ATAAAGTAGAAAGTACTACT.................................................... 20 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AAACAATCCCACAGACACGG...................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
CGTTTAAAATGCGCGACA........................................................................................................................................................................................................................................ 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CGGACTTGGGTTTAGGCTC...................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCAAATTTTACGCGGGGTCACGTGGCTCAAACTTGCGTTTTACTTAACTTCACTCACGTAGACGGCGTCCCGGATCTTTTAAAGGGGGCTGTAACGTCCGACATGTTTTGACTATGACTTTGTGTGCGTGTGTCAGTGTGTCTGTGCCTGAACCCAAATACGGTGGTGGGCGACCGGTGATTTCATCTTTAATGATTATGATGCCGACCGTGCTACGAGGTATAACGGTGAGCTCGGTACATGTTCAACG
***************************************************************************************************.((((((...........................))))))...............************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
................GTCACGTGGCTCAAACTT........................................................................................................................................................................................................................ 18 0 1 2.00 2 0 0 0 2 0 0 0 0
.........ATGCGGGGTCACGTGGCTCAAAC.......................................................................................................................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CCGACCGTGCCACGAGGTATA.......................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................GTGCGTGTGTCAGTGTGTCTG.......................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................TCAGTGTGTCTGTGTCTGAAC................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................ACTTTGTGTGCGTGTGTCAGT................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......TTACGCGGGGTCACGTGGCTCA............................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................ATGTTTTGACTATGACTTTGT............................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0
....................TGTGGCTCGAACTTGCGTTTTA................................................................................................................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.............GGGGTCACGTGGCTCAAACTT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0
..............................................................................................................................CGTGTGTCAGTGTGTCTGTGC....................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...................................................................................................................................GTCAGTGTGTCTGTGCCT..................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................GAGGTTTAATGTTGAGCTCG.............. 20 3 7 0.29 2 0 0 0 0 2 0 0 0
.............................................................................................................................................GAGTGCCTGAACCCAAAT........................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0
.............................................AACTTAGCTCACGCAGACGG......................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1
..............................................................................................................................CGTGTGTCAGTGTGTCTGTGT....................................................................................................... 21 1 5 0.20 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................................GTGGGCAAGCGGTGATT.................................................................... 17 2 13 0.08 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................ACGGTGAGCTCTGTA........... 15 1 13 0.08 1 0 0 0 0 0 0 0 1
......................................................................................................................TTTGTGCGGGTGTGTCAGT................................................................................................................. 19 2 16 0.06 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGATGCCGGCCGTGCCAC.................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 1
..................................................................................AGGGGGCTGTAAGATC........................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................TCATGATTAGGATGC.............................................. 15 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 07:01 PM