ID:

dsi_19877

 Coordinate:

3r:4363027-4363176 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.8 -13.4 -13.3 -13.2

Flybase annnotation

exon [3r_4362905_4363026_-]; CDS [3r_4362905_4363026_-]; intron [3r_4363027_4365136_-]

Repeatable elements

NameClassFamilyStrand
(GTGTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCTTGGTGCGCCGTGCCAGCGGCGAAAGGAGGACATGACCTAGCCGGGCCACCAGCGACCATTCTGTCCGGCCGTAAAACACAAGACAGGGGCCACGCCACGCCACACCACACCACACACCCACATAAATTATGCAACTGGGGGTCTTCGATTATCCAATGCCAATGTCGATGTCACTAATTCCCTCTAATCCTTTGCAGTTGTCCTTATCGGTGACTCCGGTGTTGGCAAAAGTAATTTGCTCTCACGT
***************************************************************************....((.....((..(((.............(((..........((((((((...))))....)))))))...............)))..))....))***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
...........................................................................AAAACACAAGACAGGGGC............................................................................................................................................................. 18 0 1 2.00 2 1 0 1 0 0 0 0
...................................................................................................................................................................................................................GGTGACTCCGGTGTTGGC..................... 18 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................................TATCGGTGACTCCGGTGTTGGC..................... 22 0 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................................................................................................................................GACTCCGGTGTTGGCA.................... 16 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................TATCCAATGCCAATGTCGATG............................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................CACCACACCACACACCCA............................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0
............................................................................................................................................................................................................................GGTGTTGGCAAAAGTAAT............ 18 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................CCTTATCGGTGACTCCGGTGTTGGC..................... 25 0 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................TCGGTGACTCCGGTGTTGGCA.................... 21 0 1 1.00 1 0 0 0 1 0 0 0
......................................CCTAGCCGGGTAACCA.................................................................................................................................................................................................... 16 2 20 0.45 9 0 0 0 0 0 0 9
...............................................................................CACAAGACTGGGGCC............................................................................................................................................................ 15 1 8 0.13 1 0 1 0 0 0 0 0
...................................................................................AGACAGGGGGGACGCCA...................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

GGAACCACGCGGCACGGTCGCCGCTTTCCTCCTGTACTGGATCGGCCCGGTGGTCGCTGGTAAGACAGGCCGGCATTTTGTGTTCTGTCCCCGGTGCGGTGCGGTGTGGTGTGGTGTGTGGGTGTATTTAATACGTTGACCCCCAGAAGCTAATAGGTTACGGTTACAGCTACAGTGATTAAGGGAGATTAGGAAACGTCAACAGGAATAGCCACTGAGGCCACAACCGTTTTCATTAAACGAGAGTGCA
*****************************************************************************....((.....((..(((.............(((..........((((((((...))))....)))))))...............)))..))....))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553488
RT_0-2 hours eggs
................................TGTACTCGATCGGCCCG......................................................................................................................................................................................................... 17 1 1 18.00 18 17 1 0 0 0 0 0
.................................GTACTCGATCGGCCCG......................................................................................................................................................................................................... 16 1 2 17.00 34 34 0 0 0 0 0 0
..................................TACTCGATCGGCCCG......................................................................................................................................................................................................... 15 1 20 9.90 198 188 0 2 8 0 0 0
..............................CCTGGACTCGATCGGCCCG......................................................................................................................................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0
................................TCTACTCGATCGGCCCG......................................................................................................................................................................................................... 17 2 8 1.88 15 14 0 0 1 0 0 0
...............................CTGGACTCGATCGGCCCG......................................................................................................................................................................................................... 18 2 3 1.67 5 5 0 0 0 0 0 0
...............................CTCTACTCGATCGGCCCG......................................................................................................................................................................................................... 18 2 3 1.00 3 3 0 0 0 0 0 0
...............................CTGTACTCGATCGGCCCG......................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
..............................CCTGTACTCGATAGGCCCG......................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................GGAGATTAGTAAACG.................................................... 15 1 13 0.92 12 0 0 4 4 3 0 1
..............................CCTGCACTCGATCGGCCCG......................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0
............................CCCCTGGACTCGATCGGCCCG......................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0
.................................GCACTCGATCGGCCCG......................................................................................................................................................................................................... 16 2 20 0.50 10 10 0 0 0 0 0 0
...........................................................................................................................................................GGTTACGAATACAGCGACAGT.......................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0
..............................CTTGTACTCGATCGGCCCG......................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0
.............................TCCGGCACTCGATCGGCCCG......................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0
............................CTCCGGGACTCGATCGGCCCG......................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
............................ATCCTTTACTCGATCGGCCCG......................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
...............................GTGTACTCGATCGGCCCG......................................................................................................................................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................AGGGATCGCCACTGAGG.............................. 17 2 4 0.25 1 0 0 0 0 1 0 0
...............................CCGTACTCGATCGGCCCG......................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................................................................................ACGGCTACATCTACAGTGA........................................................................ 19 2 5 0.20 1 0 0 0 0 0 1 0
.................................GAACTCGATCGGCCCG......................................................................................................................................................................................................... 16 2 20 0.20 4 4 0 0 0 0 0 0
................................TGTAGGGGATCGGCCCG......................................................................................................................................................................................................... 17 2 5 0.20 1 1 0 0 0 0 0 0
.................................GTACTCGATCGGCCC.......................................................................................................................................................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0
..............................CCAGGACTCGATCGGCCCG......................................................................................................................................................................................................... 19 3 13 0.15 2 2 0 0 0 0 0 0
..............................ACTATACTCGATCGGCCCG......................................................................................................................................................................................................... 19 3 8 0.13 1 1 0 0 0 0 0 0
........................................................................................................................................TGACCACAAGAAGCTTATAG.............................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 1
.....................................................................................................................................................................................AAGGAGATTAGTAAACG.................................................... 17 2 20 0.10 2 0 0 0 0 2 0 0
................................AGTACTCGATCGGCCCG......................................................................................................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0 0 0
.................................GTACTCGATGGGCCCG......................................................................................................................................................................................................... 16 2 20 0.10 2 2 0 0 0 0 0 0
..............................CCAATACTCGATCGGCCCG......................................................................................................................................................................................................... 19 3 11 0.09 1 1 0 0 0 0 0 0
..............................TCCGTACTCGATCGGCCCG......................................................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0
..............................CCACTACTCGATCGGCCCG......................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0
..............................CTTGGACTCGATCGGCCCG......................................................................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0 0
......................................................................................GTCCCTGGTGCGCTGCG................................................................................................................................................... 17 2 15 0.07 1 1 0 0 0 0 0 0
................................TGTTCTCGATCGGCCCG......................................................................................................................................................................................................... 17 2 15 0.07 1 1 0 0 0 0 0 0
..............................CCTCTACTCAATCGGCCCG......................................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0
.....................................TCGATCGGCCCGGGGG..................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAGCCGTTTTCATTA............ 15 1 20 0.05 1 1 0 0 0 0 0 0
...............................ATGTGCTCGATCGGCCCG......................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0
....................................CTCGATCGGCCCGGAGGG.................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0
.................................GTACTCGATCGGCCTG......................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
................................................................................................................................................................CGGCTACATCTACAGTGAG....................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
...................................ACTCGATCGGCCCGCCGGT.................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/24/2015 at 03:31 AM