ID:

dsi_19850

 Coordinate:

2r:14620920-14621011 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2r_14621012_14621223_-]; CDS [2r_14621012_14621086_-]; CDS [2r_14620611_14620919_-]; exon [2r_14620509_14620919_-]; intron [2r_14620920_14621011_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------##################################################
TCGCATTTGCTGTTTTGCTCGCCGGATTGTGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAATGGAAATGAAAATGAGACCGGGTTGGTGACAATCGAGTAACCGTAACCCCCTTTTCGTAATCTCCAACAGGCGGCACCCGTGGAATGCAATAATGGCGGTGGCATCCAGATCTCTGACGA
**************************************************......................((((...((..((((((..((((((((.((......)).)))..)))))...))))))..))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 GSM343915
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
....ATTTGCTGTTTTGCTCGCCGG....................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.................CTCGCCGGATTGTGCGTGCT........................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................CCGGATTGTGCGTGCTATCC....................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................GGCGGTGGCATCCAGATCTCTGACG. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..........................TTGTGCGTGCTATCCGGTCTGAAT.............................................................................................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0
....ATTTGCTGTTTTGCTCGCC......................................................................................................................................................................... 19 0 1 2.00 2 0 1 1 0 0 0 0 0 0
..................................GCTATCCGGTCTGAATGC............................................................................................................................................ 18 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...CATTTGCTGTTTTGCTCGCCG........................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................CGTGGTATCCTGTCTGAAT.............................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 1 0 0 0
..............TTGCTCGCCGGATTGTGCGTGCTATCC....................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............TGCTCGCCGGATTGTGCGTG............................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................GTGCTATCCGGTCTGAATG............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................GTGCTATCCGGTCTGAAT.............................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................CGGATTGTGCGTGCTATCC....................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.CGCATTTGCTGTTTTGCTCGCC......................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................GGCGGTGGCATCCAGATCTCTGAC.. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................GTGCGTGCTATCCGGTCTGAA............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................CGCCGGATTGTGCGTGCC........................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................TGTGCGTGCTATCCGGTCTGAATGC............................................................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
................................GTGCTATCCGGTCTGAATGC............................................................................................................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................TGCTATCCGGTCTGAATGC............................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....TTTGCTGTTTTGCTCGCCGGG...................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CATCCAGATCTCTGACGG 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................GCATCCAGATCTCTGACG. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......TTGCTGTTTTGCTCGCCGGATTGTGCGTG............................................................................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................CGGTGGCATCCAGATCTCTGAC.. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TGGCATCCAGATCTCTGACG. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................TTGTGCGTGCTATCCGGTCTGAATGC............................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GGTGGCATCCAGATCTCTGAC.. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................CTCGCCGGATTGTGCGTGCG........................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........GTTTTGCTCGCCGGATTGTGC................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....TTTGCTGTTTTGCTCGCC......................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...CATTTGCTGTTTTGCTCGCCGGAT..................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........TGTTTTGCTCGCCGGATTGTGCGTG............................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................CGCCGGATTGTGCGTGCT........................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................CGTGGTATCCTGTCTGAATA............................................................................................................................................. 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................GGAGGCACACGTGGAATGCCA.............................. 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0
..............................ACGTGGTATCCTGTCTGAAT.............................................................................................................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0
...............................CGTGCAATCCTGTCTGA................................................................................................................................................ 17 2 9 0.22 2 0 0 0 0 0 0 2 0 0
...........................................TCTGAATGTATTGAAATT................................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 0 1 1
..........TGTTGTGCTCGGCGGATT.................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 1
.........................................................................................................CGACTTACCGTAACC........................................................................ 15 2 20 0.10 2 0 0 0 0 0 0 2 0 0
...................................................................................ATGAGACCGGGTTGAGG............................................................................................ 17 2 11 0.09 1 0 0 0 0 0 1 0 0 0
.........................................................................................CCGGGTTGATGACAATG...................................................................................... 17 2 18 0.06 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

AGCGTAAACGACAAAACGAGCGGCCTAACACGCACGATAGGCCAGACTTACATTACTTTTACTTTAACTTTTACCTTTACTTTTACTCTGGCCCAACCACTGTTAGCTCATTGGCATTGGGGGAAAAGCATTAGAGGTTGTCCGCCGTGGGCACCTTACGTTATTACCGCCACCGTAGGTCTAGAGACTGCT
**************************************************......................((((...((..((((((..((((((((.((......)).)))..)))))...))))))..))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
........................................................................................................................GGGAAAAGCATTAGAGGTTC.................................................... 20 1 1 1.00 1 1 0 0 0 0
............................CAGGCACGAAAGGCCATACT................................................................................................................................................ 20 3 3 0.33 1 0 1 0 0 0
............................CAGGCACGAAAGGCCATAC................................................................................................................................................. 19 3 14 0.21 3 0 3 0 0 0
.......................................................CTCTTACTTTAACTTTTATCTAT.................................................................................................................. 23 3 8 0.13 1 0 0 1 0 0
.........................................................................................GGCCCAACTACTGTTAC...................................................................................... 17 2 18 0.06 1 0 0 0 1 0
...........CAAAACTAGCAGCCTGACA.................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14620870-14621061 - dsi_19850 TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA---T----GGAAATGAAAATGAGAC----CGGG------TTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCCC----------T-------------TTTCGTAATCT-CC--AACAGGCGGCACCC------GTGGAATGCAATAATGG---CGGT------GGCATCCAGATCTCTGACG---A
droSec2 scaffold_1:11424415-11424606 - TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA---T----GGAAATGAAAATGAGAC----CGGG------TTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCCC----------T-------------TTTCGTAATCT-CC--AACAGGCGGCACCC------GTGGAATGCAATAATGG---CGGT------GGCATCCAGATCTCTGACG---T
dm3 chr2R:13930877-13931068 - TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA---T----GGAAATGAAAATGAGAC----CGGG------TTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCCC----------T-------------TTTCGTAATCT-CC--AACAGGCGGCACCC------GTGGAATGCAATAATGG---CGGT------GGCATCCAGATCTCTGACG---A
droEre2 scaffold_4845:8158889-8159074 - TCGCATTTGCTGTTG-TTCTCGCCGGACTG---TGCGTGCTATCCGGCCTGAATGTAATGAAAATGAAAAT-------------GGAAATGAAAATGAGAC----CGAG------TTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCTC----------T-------------ATCCGCCTTCT-CC--TACAGGCGGCACCC------GTGGAATGCAATAATGG---CAAT------GGCATCCAGATCTCTGACG---A
droYak3 2R:15246342-15246545 + TCGCATTTGCTGTTG-TACTCGCCGGACTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAGATTGAAAATGAA-AATTGAAATGAAAATGAGAC----CGAGCTGTTGTTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCTC----------T-------------ATCCGCTTTTT-TC--CGCAGGCGGCACCC------GTGGAATGCAATAATGG---CAAT------GGCATCCAGATCTCCGGCG---A
droEug1 scf7180000409672:1158648-1158843 + TCGCATTTGCTGTTG-TCCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAACGTAATGAAAATGAAAATGA-------------------AAATGAGACTTCTCGGG------ATGGTCAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCTC----------TATCCTCTCTCTCTCTCTGCTTT-T-TT--CCTAGGCGGCACCC------GTGGAATGCAATAATGG---CAGT------GGAATCCAGGTCTCTGAGG---A
droBia1 scf7180000301754:2607006-2607182 + TCGCATTTGCTGTTT-TTCTCGCCGGACTG---TGCGTGCTGTCCGGACTGAACGTAATGAAAATGAACATGAGTC---T----GGA---------------------G------GTGGTGAC----------------------------------------------------------------------------------------------------------CATCGAGCGGGCGTAACCCTT----------T--------------ACCATTTTCC-CC--CGCAGGCGGCGCCC------GTGGTGTGCAACGATGG---CAGT------GGCATCCAGGTGTCCGATGGCAA
droTak1 scf7180000415795:285806-285987 - TCGCATTTGCTGTTT-TTCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAATGTAATGAAAATGAAA-------------------------ATGAGAC----TGGG------GTGGTGAC----------------------------------------------------------------------------------------------------------AACCGAGTAACCGTAACCCAA----------TATCCCCT------CTTCGTTTTCCCCC--TTTAGGCGGCGCCC------GTGGAATGCAATAACGG---CGAT------GGAACCCAGATCTCCGAAA---A
droEle1 scf7180000491214:275896-276081 + TCGCATTTGCTGTTA-TTCTCGCCGGATTG---TGCGTGCTGTCCGGACTTAACGTAATGAAAATGAAAATCA------ACAACTGAAA----------------TGGG------GTTGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAAACATAACCCTCCTCC-G----T-------------CTACGATTTCT-CC--CTCAGGCGGCGCCC------GTGGAATGCAATAATAG---CAGT------GGCACTCAGGTCTCCGAAA---A
droRho1 scf7180000779949:172661-172853 + TCGCATTTGCTGTAG-TTCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAAGGTAATGAAAATGGGAATGAAAATGAACAACAGAAA----------------TGTG------GTAGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCTCCCCCCC----T-------------CTACGATTTCC-CT--ATCAGGCGGCACCC------GTGGAATGCAATAATGG---CAGT------GGCACCCAGATCTCCGCCG---A
droFic1 scf7180000453948:1502735-1502903 + TCGCAATTGCTGTTT-TTCTCGCCGGATTG---TGCGTGCTGTCCGGCCTGAACGTAATGAGAATGGAAATGAACTCG------GCAAA----------------TGGC------GCTGGAAA----------------------------------------------------------------------------------------------------------AGCTAAGCAACCGTATCCCTA----------T--------------------------T--TTCAGGCGGCGCCC------ATTCAGTGCAACAACGG---AAGT------GGCATCCAGATATCCGAGG---A
droKik1 scf7180000302385:735038-735313 - CCGTATTTGCCGTTC-TCCTCGCTGGACTC---TGTGTGCTTCCAGGACTGAAGGAAAGG-------------------------------GTTACGAGGG----GAGC------TTAGGGATATATCTAGGGGGAATACTCTTGCAGTTAATCAGGGTTTAAATTGTTTTATTTCGTAATTAAATCTTGTAATTGTGTTTGGGTTTTTAATGATAAATTAAAGTTTTTTCTGGAATAACCATAACCTTTTTTT-----------------------ATTTATTT-CCTTTCCAGGCGGCGCCC------ATTGAGTGCAATTCAGA---CAAT------GGCATCCAGGTCTCGGGGA---A
droAna3 scaffold_13266:10255830-10255907 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGTTATCCGT----------T-------------ATCC-----TT-TT--AATAGGCGGCACCC------GTAGAATGCAATAACAG---CGGT------GGAACGCAGTACTCTCAGG---A
droBip1 scf7180000396428:675160-675237 + TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGTTATCCGT----------T-------------ATCC-----TT-TT--AATAGGCGGCACCC------GTAGAATGCAATAACAG---CGGT------GGAACGCAGTACTCTGAGG---A
dp5 3:6397238-6397431 - TCGTGGTTGCCGTGG-CCATTGCCGGGCTG---TGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACA---ACAGC----------------ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------AGT-GGGAAACTACAATCCTGTAAACGTTTA---------------------TCCT-TT--ATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACGCA------GGAACGCAGCACTCAGCCG---A
droPer2 scaffold_2:6613136-6613329 - dpe_1089 TCGTGGTTGCCGTGG-CCATTGCCGGGCTG---TGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACA---ACAGC----------------ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------AGT-GGGAAACTACAATCCTGTAAACGTTTA---------------------TCCT-TT--ATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACGCA------GGAACGCAGCACTCAGCCG---A
droWil2 scf2_1100000004558:2485748-2485944 - TCGCTGCTGCTGTTAGCAGTTATTGGACTGGTCAGCCTGTTGTCCTTTGTGCATGTAATGAAAACTGACTAGAAAA---C-------AACGAAAACAACAA----GA--------GCTCAAAC----------------------------------------------------------------------------------------------------------AAC--AACAACAACAATCACTTTTTGTTTCA---------------------CCCA-TC--AACAGGCTAAACCCCTCGATATACAGTGCAATTATGG---CTCT------GGTACACAGATTTCCGACG---A
droVir3 scaffold_12875:15175838-15175979 + T-------------------------------------GCTAGCCAGCGTGAATGTAATGAGAATTGACTAGCCAA---A-------------------------A---------------------------------------------------------------------------------------------------------------------------------GCTGTCGCAGCCATGTTTAACTTTA---------------------CCAT-TG--AACAGGCTCTACCAGTCCAAGTGCAGTGCAATGATGGCAGCAATGGAACTCAAACCCAGACCTCGGCAG---A
droMoj3 scaffold_6496:8654612-8654684 - TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGGCGCTGCCAGTGCGAGTGCAATGCAGCGACAACAACAACGGAACTCAGACGCAAACCTCGTCGG---A
droGri2 scaffold_15245:8154962-8154991 - T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGG---GTAT------GGAACTCAAACTTCGATGG---A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA---T----GGAAATGAAAATGAGAC----CGGG------TTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCCC----------T-------------TTTCGTAATCT-CC--AACAGGCGGCACCC------GTGGAATGCAATAATGG---CGGT------GGCATCCAGATCTCTGACG---ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....ATTTGCTGTTT-TGCTCGCCGG.................................................................................................................................................................................................................................................................................................................................................2114.00400400000000000000
..................CTCGCCGGATTG---TGCGTGCT..................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
......................CCGGATTG---TGCGTGCTATCC..............................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
.....................................................................................................................................................................................................................................................................................................................................GG---CGGT------GGCATCCAGATCTCTGACG---.2512.00220000000000000000
...........................TTG---TGCGTGCTATCCGGTCTGAAT.....................................................................................................................................................................................................................................................................................................................2412.00220000000000000000
....ATTTGCTGTTT-TGCTCGCC...................................................................................................................................................................................................................................................................................................................................................1912.00211000000000000000
......................................GCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
...CATTTGCTGTTT-TGCTCGCCG..................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............T-TGCTCGCCGGATTG---TGCGTGCTATCC..............................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
................TGCTCGCCGGATTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
....................................GTGCTATCCGGTCTGAATG....................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
....................................GTGCTATCCGGTCTGAAT.....................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.......................CGGATTG---TGCGTGCTATCC..............................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.CGCATTTGCTGTTT-TGCTCGCC...................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................GG---CGGT------GGCATCCAGATCTCTGAC.....2411.00100100000000000000
.............................G---TGCGTGCTATCCGGTCTGAA......................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....................CGCCGGATTG---TGCGTGCC..................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
............................TG---TGCGTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
....................................GTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
.....................................TGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.....TTTGCTGTTT-TGCTCGCCGGG................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................CATCCAGATCTCTGACG---G1811.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................GCATCCAGATCTCTGACG---.1811.00100100000000000000
......TTGCTGTTT-TGCTCGCCGGATTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................2911.00100000000000100000
..........................................................................................................................................................................................................................................................................................................................................CGGT------GGCATCCAGATCTCTGAC.....2211.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................................T------GGCATCCAGATCTCTGACG---.2011.00101000000000000000
...........................TTG---TGCGTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................GGT------GGCATCCAGATCTCTGAC.....2111.00101000000000000000
..................CTCGCCGGATTG---TGCGTGCG..................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...........GTTT-TGCTCGCCGGATTG---TGC.......................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
.....TTTGCTGTTT-TGCTCGCC...................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...CATTTGCTGTTT-TGCTCGCCGGAT...............................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..........TGTTT-TGCTCGCCGGATTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
....................CGCCGGATTG---TGCGTGCT..................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA---T----GGAAATGAAAATGAGAC----CGGG------TTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCCC----------T-------------TTTCGTAATCT-CC--AACAGGCGGCACCC------GTGGAATGCAATAATGG---CGGT------GGCATCCAGATCTCTGACG---TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................GCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................1814.0040040
....................CGCCGGATTG---TGCGTGCTATCC..............................................................................................................................................................................................................................................................................................................................2211.0010010
.....................................TGCTATCCGGTCTGAATGCG..................................................................................................................................................................................................................................................................................................................2011.0010010
............................TG---TGCGTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2511.0010010
.......................................................TAATGAAAATGAAATTGAAAA---T----.......................................................................................................................................................................................................................................................................................2211.0011000
................TGCTCGCCGGATTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................GTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2011.0010010
.................................TGCGTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2311.0010010
.........................GATTG---TGCGTGCTATCCGGTCTGAA......................................................................................................................................................................................................................................................................................................................2511.0010001
...........GTTT-TGCTCGCCGGATTG---TGCGT.....................................................................................................................................................................................................................................................................................................................................2311.0010010
...CATTTGCTGTTT-TGCTCGCCGG.................................................................................................................................................................................................................................................................................................................................................2211.0010010
....................................................................................................................................................................................................................................................................T-------------TTTCGTAATCT-CC--AACAGGCGGCA..............................................................2511.0010001
...........................TTG---TGCGTGCTATCCGGTCTGAAT.....................................................................................................................................................................................................................................................................................................................2411.0010001
........................................................................................................................GAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACC....................................................................................................................2111.0010010
.....TTTGCTGTTT-TGCTCGCCGGATTG---..........................................................................................................................................................................................................................................................................................................................................2411.0010001
.........................GATTG---TGCGTGCTATCCGGTCTGA.......................................................................................................................................................................................................................................................................................................................2411.0010001
dm3
TCGCATTTGCTGTTT-TGCTCGCCGGATTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAAATTGAAAA---T----GGAAATGAAAATGAGAC----CGGG------TTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCCC----------T-------------TTTCGTAATCT-CC--AACAGGCGGCACCC------GTGGAATGCAATAATGG---CGGT------GGCATCCAGATCTCTGACG---ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................CGGCACCC------GTGGAATGCAATAATGG---C................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CGCCGGATTG---TGCGTGCT..................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGCTCGCCGGATTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
....ATTTGCTGTTT-TGCTCGCCG..................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................TTG---TGCGTGCTATCCGGTCTGAATG....................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........GTTT-TGCTCGCCGGATTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................TG---TGCGTGCTATCCGGTCTGAATGCG..................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.............................G---TGCGTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGGATTG---TGCGTGCTATCC..............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TG---TGCGTGCTATCCGGTCTGA.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGCGTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATTG---TGCGTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CGCCGGATTG---TGCGTGCTATCC..............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.............TT-TGCTCGCCGGATTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................ACCC------GTGGAATGCAATAATGG---CGGT------.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCGCCGGATTG---TGCGTGCTATCC..............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TTTGCTGTTT-TGCTCGCCGG.................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TG---TGCGTGCTATCCGGTCTGAATG....................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................CGCCGGATTG---TGCGTGC...................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATTG---TGCGTGCTATCCGG............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................ATAATGG---CGGT------GGCATCCAGATC...........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TGAAAA---T----GGAAATGAAAATGAGAC----C.................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTCGCCGGATTG---TGCGTGCT..................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TCGCCGGATTG---TGCGTGCTA.................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TGCGTGCTATCCGGTCTGA.......................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..........................................................................................GAAAATGAGAC----CGGG------TTGGT...................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGCTGTTT-TGCTCGCCG..................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GTGGAATGCAATAATGG---CGGT------GGG....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
....................................GTGCTATCCGGTCTGAATGCG..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................C------GTGGAATGCAATAATGG---C................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................TG---TGCGTGCTATCCGGTCT.........................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGCATTTGCTGTTT-TGCTCGCC...................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTGCTATCCGGTCTGAATG....................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................GTGGAATGCAATAATGG---C................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GCGGCACCC------GTGGAATGCAATAAT......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CTCGCCGGATTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATTG---TGCGTGCTATCCG.............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CGCCGGATTG---TGCGTGCTA.................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................GTGCTATCCGGTCTGAATGC...................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATTG---TGCGTGCTATCCGGTCTGAG......................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................ATTG---TGCGTGCTATCCGGTCTGAATG....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......TTGCTGTTT-TGCTCGCCGGAT...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CCGGATTG---TGCGTGCTATCC..............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GCTGTTT-TGCTCGCCGGATTG---..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................GCACCC------GTGGAATGCAAT.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TATCCGGTCTGAATGCG..................................................................................................................................................................................................................................................................................................................1770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCGCATTTGCTGTTG-TTCTCGCCGGACTG---TGCGTGCTATCCGGCCTGAATGTAATGAAAATGAAAAT-------------GGAAATGAAAATGAGAC----CGAG------TTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCTC----------T-------------ATCCGCCTTCT-CC--TACAGGCGGCACCC------GTGGAATGCAATAATGG---CAAT------GGCATCCAGATCTCTGACG---ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................GACTG---TGCGTGCTATCCGGCCTG........................................................................................................................................................................................................................................................................................................................2314.0043000100
....ATTTGCTGTTG-TTCTCGCCG..................................................................................................................................................................................................................................................................................................................................................2013.0031001100
.CGCATTTGCTGTTG-TTCTCGCCG..................................................................................................................................................................................................................................................................................................................................................2312.0022000000
.....TTTGCTGTTG-TTCTCGCCGGACTG---TGC.......................................................................................................................................................................................................................................................................................................................................2711.0010100000
........................GGACTG---TGCGTGCTATCCGGCC..........................................................................................................................................................................................................................................................................................................................2211.0011000000
..GCATTTGCTGTTG-TTCTCGCCGG.................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...................................................................................................................................................................................................................................................................................................................................ATGG---CAAT------GGCATCCAGATCTCTGAC.....2611.0011000000
...CATTTGCTGTTG-TTCTCGCCGGACT..............................................................................................................................................................................................................................................................................................................................................2511.0010100000
.........................GACTG---TGCGTGCTATCCGGC...........................................................................................................................................................................................................................................................................................................................2011.0010001000
..........................ACTG---TGCGTGCTATCCGGCCTG........................................................................................................................................................................................................................................................................................................................2211.0011000000
............................TG---TGCGTGCTATCCGGCCTG........................................................................................................................................................................................................................................................................................................................2011.0011000000
............................TG---TGCGTGCTATCCGGCCT.........................................................................................................................................................................................................................................................................................................................1911.0010001000
...........................................................................................................................................................................................................................................................................................................................ATGCAATAATGG---CAAT------GGCATCCA...............2411.0011000000
...........................CTG---TGCGTGCTATCCGGC...........................................................................................................................................................................................................................................................................................................................1811.0011000000
.............................G---TGCGTGCTATCCGGCCTGA.......................................................................................................................................................................................................................................................................................................................2011.0011000000
....ATTTGCTGTTG-TTCTCGCC...................................................................................................................................................................................................................................................................................................................................................1911.0010100000
droYak3
TCGCATTTGCTGTTG-TACTCGCCGGACTG---TGCGTGCTATCCGGTCTGAATGTAATGAAAATGAGATTGAAAATGAA-AATTGAAATGAAAATGAGAC----CGAGCTGTTGTTGGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCTC----------T-------------ATCCGCTTTTT-TC--CGCAGGCGGCACCC------GTGGAATGCAATAATGG---CAAT------GGCATCCAGATCTCCGGCG---ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................CACCC------GTGGAATGCAATAATGG---CAAT------G......................2711.00100000010000
.......TGCTGTTG-TACTCGCCGGACT..............................................................................................................................................................................................................................................................................................................................................2111.00110000000000
...........GTTG-TACTCGCCGGACTG---TGCGTGCTATC...............................................................................................................................................................................................................................................................................................................................2911.00110000000000
..................CTCGCCGGACTG---TGCGTGC...................................................................................................................................................................................................................................................................................................................................1911.00101000000000
............................................................................................................................................................................................................................................................................................................ACCC------GTGGAATGCAATAATGG---C................................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................ATGCAATAATGG---CAAT------GGC....................1911.00100100000000
..........................ACTG---TGCGTGCTATCCGGTCTGAATGCG..................................................................................................................................................................................................................................................................................................................2811.00100000010000
.CGCATTTGCTGTTG-TACTCGCC...................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...CATTTGCTGTTG-TACTCGCCGGACTG---TGC.......................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.....TTTGCTGTTG-TACTCGCC...................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
droEug1
TCGCATTTGCTGTTG-TCCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAACGTAATGAAAATGAAAATGA-------------------AAATGAGACTTCTCGGG------ATGGTCAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCTC----------TATCCTCTCTCTCTCTCTGCTTT-T-TT--CCTAGGCGGCACCC------GTGGAATGCAATAATGG---CAGT------GGAATCCAGGTCTCTGAGG---ASizeHit CountTotal NormTotal
No Reads
droBia1
TCGCATTTGCTGTTT-TTCTCGCCGGACTG---TGCGTGCTGTCCGGACTGAACGTAATGAAAATGAACATGAGTC---T----GGA---------------------G------GTGGTGAC----------------------------------------------------------------------------------------------------------CATCGAGCGGGCGTAACCCTT----------T--------------ACCATTTTCC-CC--CGCAGGCGGCGCCC------GTGGTGTGCAACGATGG---CAGT------GGCATCCAGGTGTCCGATGGCAASizeHit CountTotal NormTotal
No Reads
droTak1
TCGCATTTGCTGTTT-TTCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAATGTAATGAAAATGAAA-------------------------ATGAGAC----TGGG------GTGGTGAC----------------------------------------------------------------------------------------------------------AACCGAGTAACCGTAACCCAA----------TATCCCCT------CTTCGTTTTCCCCC--TTTAGGCGGCGCCC------GTGGAATGCAATAACGG---CGAT------GGAACCCAGATCTCCGAAA---ASizeHit CountTotal NormTotal
No Reads
droEle1
TCGCATTTGCTGTTA-TTCTCGCCGGATTG---TGCGTGCTGTCCGGACTTAACGTAATGAAAATGAAAATCA------ACAACTGAAA----------------TGGG------GTTGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAAACATAACCCTCCTCC-G----T-------------CTACGATTTCT-CC--CTCAGGCGGCGCCC------GTGGAATGCAATAATAG---CAGT------GGCACTCAGGTCTCCGAAA---ASizeHit CountTotal NormTotal
No Reads
droRho1
TCGCATTTGCTGTAG-TTCTCGCCGGATTG---TGCGTGCTGTCCGGTCTGAAGGTAATGAAAATGGGAATGAAAATGAACAACAGAAA----------------TGTG------GTAGTGAC----------------------------------------------------------------------------------------------------------AATCGAGTAACCGTAACCCTCCCCCCC----T-------------CTACGATTTCC-CT--ATCAGGCGGCACCC------GTGGAATGCAATAATGG---CAGT------GGCACCCAGATCTCCGCCG---ASizeHit CountTotal NormTotal
No Reads
droFic1
TCGCAATTGCTGTTT-TTCTCGCCGGATTG---TGCGTGCTGTCCGGCCTGAACGTAATGAGAATGGAAATGAACTCG------GCAAA----------------TGGC------GCTGGAAA----------------------------------------------------------------------------------------------------------AGCTAAGCAACCGTATCCCTA----------T--------------------------T--TTCAGGCGGCGCCC------ATTCAGTGCAACAACGG---AAGT------GGCATCCAGATATCCGAGG---ASizeHit CountTotal NormTotal
No Reads
droKik1
CCGTATTTGCCGTTC-TCCTCGCTGGACTC---TGTGTGCTTCCAGGACTGAAGGAAAGG-------------------------------GTTACGAGGG----GAGC------TTAGGGATATATCTAGGGGGAATACTCTTGCAGTTAATCAGGGTTTAAATTGTTTTATTTCGTAATTAAATCTTGTAATTGTGTTTGGGTTTTTAATGATAAATTAAAGTTTTTTCTGGAATAACCATAACCTTTTTTT-----------------------ATTTATTT-CCTTTCCAGGCGGCGCCC------ATTGAGTGCAATTCAGA---CAAT------GGCATCCAGGTCTCGGGGA---ASizeHit CountTotal NormTotal
No Reads
droAna3
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGTTATCCGT----------T-------------ATCC-----TT-TT--AATAGGCGGCACCC------GTAGAATGCAATAACAG---CGGT------GGAACGCAGTACTCTCAGG---ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................GTAGAATGCAATAACAG---CGGT------.......................2112.002000002
...................................................................................................................................................................................................................................................................................................................................ACAG---CGGT------GGAACGCAGTA............1911.001010000
............................................................................................................................................................................................................................................................................................................................TGCAATAACAG---CGGT------GGA....................1811.001100000
...............................................................................................................................................................................................................................................................................................................C------GTAGAATGCAATAACAG---CGGT------.......................2211.001010000
..............................................................................................................................................................................................................................................................................................................................CAATAACAG---CGGT------GGAACGCA...............2111.001010000
...............................................................................................................................................................................................................................................................................................................................AATAACAG---CGGT------GGAACGCA...............2011.001000010
.............................................................................................................................................................................................................................................................................................................CCC------GTAGAATGCAATAACAG---C................................2111.001010000
.............................................................................................................................................................................................................................................................................................................................GCAATAACAG---CGGT------GGAACGC................2111.001001000
droBip1
TA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCGTTATCCGT----------T-------------ATCC-----TT-TT--AATAGGCGGCACCC------GTAGAATGCAATAACAG---CGGT------GGAACGCAGTACTCTGAGG---ASizeHit CountTotal NormTotal
No Reads
dp5
TCGTGGTTGCCGTGG-CCATTGCCGGGCTG---TGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACA---ACAGC----------------ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------AGT-GGGAAACTACAATCCTGTAAACGTTTA---------------------TCCT-TT--ATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACGCA------GGAACGCAGCACTCAGCCG---ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................AGTGCAACTGTGGGGACGCA------G......................2113.0030010200000
........................................................................................................................................................................................................................................................................................................................GCAGTGCAACTGTGGGGACGCA------GGAAC..................2712.0020010100000
.................CATTGCCGGGCTG---TGCGTGCTGT................................................................................................................................................................................................................................................................................................................................2312.0020000200000
........................................................................................................................................................................................................................................................................................................................GCAGTGCAACTGTGGGGACGCA------GG.....................2412.0020110000000
.............GG-CCATTGCCGGGCTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................2211.0010100000000
................CCATTGCCGGGCTG---TGCGTGCTGT................................................................................................................................................................................................................................................................................................................................2411.0010000100000
.......................................................................................................................................................................................................................................................................................................................................GGACGCA------GGAACGCAGCA............1811.0010000100000
...........................................................................................................................................................................................................................................................................................................................GTGCAACTGTGGGGACGCA------GGAAC..................2411.0010010000000
........................................................................................................................................................................................................................................................................................................................GCAGTGCAACTGTGGGGA.................................1811.0010100000000
.......TGCCGTGG-CCATTGCCGGGCTG---TGCGT.....................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..................ATTGCCGGGCTG---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................2911.0010000100000
.................CATTGCCGGGCTG---TGCGT.....................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...........................................................................................................................................................................................................................................................................................................................................GCA------GGAACGCAGCACTCAGC......2011.0010100000000
................CCATTGCCGGGCTG---TGCGTGCTGTC...............................................................................................................................................................................................................................................................................................................................2511.0010010000000
...............................................................................................................................................................................................................................................................................................................................AACTGTGGGGACGCA------GGAACGC................2211.0010000100000
...................................................................................................................................................................................................................................................................................................................................GTGGGGACGCA------GGAACGCAGC.............2111.0010100000000
.............................G---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................1811.0010000100000
.......................................................................................................................................................................................................................................................................................................GCAGCGCCTCTCGACGTGCA................................................2011.0010100000000
droPer2
TCGTGGTTGCCGTGG-CCATTGCCGGGCTG---TGCGTGCTGTCAGGGCTGAATGTAATGAAAATTGAGTAGAACA---ACAGC----------------ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------AGT-GGGAAACTACAATCCTGTAAACGTTTA---------------------TCCT-TT--ATCAGGCAGCGCCTCTCGACGTGCAGTGCAACTGTGGGGACGCA------GGAACGCAGCACTCAGCCG---ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................G---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................18124.00242400000
.................CATTGCCGGGCTG---TGCGTGCT..................................................................................................................................................................................................................................................................................................................................21115.00151401000
............................TG---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................19113.00131300000
...........................CTG---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................20112.00121101000
...........................................................................................................................................................................................................................................................................................................................GTGCAACTGTGGGGACGCA------GGAACGCA...............2715.005500000
...................................................................................C----------------ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------A.....................................................................................................................................1914.004400000
.............................G---TGCGTGCTGTCAGGGCTGAAT.....................................................................................................................................................................................................................................................................................................................2214.004001003
..................................................................................GC----------------ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------......................................................................................................................................1913.003300000
............................TG---TGCGTGCTGTCAGGGC..........................................................................................................................................................................................................................................................................................................................1813.003300000
..........................................................................................................................................................................................................................................................................................................................................CGCA------GGAACGCAGCACTC.........1813.003300000
.............................G---TGCGTGCTGTCAGGGCC.........................................................................................................................................................................................................................................................................................................................1812.002200000
.........................GGCTG---TGCGTGCTGTCAGGGC..........................................................................................................................................................................................................................................................................................................................2112.002200000
.............................................................................................................................................................................................................................................................................................................................................A------GGAACGCAGCACTCAGCC.....1912.002200000
........................................................................................................................................................................................................................................................................................................................GCAGTGCAACTGTGGGGACGCA------G......................2312.002002000
.................CATTGCCGGGCTG---TGCGTGCG..................................................................................................................................................................................................................................................................................................................................2112.002200000
..................................................................................................................................................................................................................................................................................................................................TGTGGGGACGCA------GGAACGCAGCACT..........2512.002101000
................CCATTGCCGGGCTG---TGCGTGCT..................................................................................................................................................................................................................................................................................................................................2212.002200000
.....................GCCGGGCTG---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................2612.002200000
.................CATTGCCGGGCTG---TGCGTG....................................................................................................................................................................................................................................................................................................................................1912.002002000
..........................................................................................................................................................................................................................................................................................................................................CGCA------GGAACGCAGCACTCAGCCG---.2312.002200000
..................ATTGCCGGGCTG---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................2912.002200000
........GCCGTGG-CCATTGCCGGGC...............................................................................................................................................................................................................................................................................................................................................1912.002200000
..........................GCTG---TGCGTGCTGTCAGGGCTGAATGC...................................................................................................................................................................................................................................................................................................................2711.001001000
..........................................................................................................................................................................................................................................................................................................................AGTGCAACTGTGGGGACGCA------.......................2011.001001000
......................................................GTAATGAAAATTGAGTAGAACA---ACAGC----------------.......................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................................................................................TGTGGGGACGCA------GGAACGC................1911.001010000
..................ATTGCCGGGCTG---TGCGTGCTGTCAGGGCC.........................................................................................................................................................................................................................................................................................................................2911.001100000
..........CGTGG-CCATTGCCGGGCT..............................................................................................................................................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................CGCA------GGAACGCAGCACTCAGCC.....2211.001100000
.........................GGCTG---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................2211.001100000
..................ATTGCCGGGCTG---TGCGTGCT..................................................................................................................................................................................................................................................................................................................................2011.001001000
..................ATTGCCGGGCTG---TGCGTGC...................................................................................................................................................................................................................................................................................................................................1911.001001000
.........................................................................................................................................................................................................................................................................................................................................ACGCA------GGAACGCAGCACTC.........1911.001100000
.................CATTGCCGGGCTG---TGCGTGCTGT................................................................................................................................................................................................................................................................................................................................2311.001001000
...........................CTG---TGCGTGCTGTCAGGGCG.........................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................................................................................GCAACTGTGGGGACGCA------GGAAC..................2211.001010000
....................................................................................................ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------A.....................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................GCAGCGCCTCTCGACGTGCAGTGC............................................2411.001001000
.............GG-CCATTGCCGGGCTG---TGCGTGCTGT................................................................................................................................................................................................................................................................................................................................2611.001001000
..........CGTGG-CCATTGCCGGGCTG---TGCGTGCT..................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................................AACTACAATCCTGTAAACGT..........................................................................................................2011.001001000
.................CATTGCCGGGCTG---TGCGTGC...................................................................................................................................................................................................................................................................................................................................2011.001001000
........................GGGCTG---TGCGTGCTGTCAG.............................................................................................................................................................................................................................................................................................................................1911.001001000
....................................................................................................ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------AGT-GGGAAACT..........................................................................................................................2811.001100000
....................................................................................................ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------AGT-..................................................................................................................................2011.001100000
.............................G---TGCGTGCTGTCAGGGCTGA.......................................................................................................................................................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................................................................................GACGCA------GGAACGCAGCACT..........1911.001100000
...................................................................................C----------------ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------......................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................GCAGCGCCTCTCGACGTGCA................................................2011.001001000
.........CCGTGG-CCATTGCCGGGCT..............................................................................................................................................................................................................................................................................................................................................1911.001100000
.............GG-CCATTGCCGGGCTG---TGCGTGCTGTCAG.............................................................................................................................................................................................................................................................................................................................2911.001100000
.CGTGGTTGCCGTGG-CCATTGCCGGG................................................................................................................................................................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................................................................................................................................................CTGTGGGGACGCA------GGAACGCAGCACT..........2611.001100000
.................CATTGCCGGGCTG---TGCGTGT...................................................................................................................................................................................................................................................................................................................................2011.001001000
.................CATTGCCGGGCTG---TGCGTGCTG.................................................................................................................................................................................................................................................................................................................................2211.001010000
..........................GCTG---TGCGTGCTGTCAGGGCT.........................................................................................................................................................................................................................................................................................................................2111.001001000
....................................................................................................ATACATGGC------TCTCTGAC----------------------------------------------------------------------------------------------------------AGT-G.................................................................................................................................2111.001100000
droWil2
TCGCTGCTGCTGTTAGCAGTTATTGGACTGGTCAGCCTGTTGTCCTTTGTGCATGTAATGAAAACTGACTAGAAAA---C-------AACGAAAACAACAA----GA--------GCTCAAAC----------------------------------------------------------------------------------------------------------AAC--AACAACAACAATCACTTTTTGTTTCA---------------------CCCA-TC--AACAGGCTAAACCCCTCGATATACAGTGCAATTATGG---CTCT------GGTACACAGATTTCCGACG---ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................GTTATTGGACTGGTCAGC.......................................................................................................................................................................................................................................................................................................................................1821.00220000
.........CTGTTAGCAGTTATTGGAC...............................................................................................................................................................................................................................................................................................................................................1911.00101000
..................GTTATTGGACTGGTCAGCCT.....................................................................................................................................................................................................................................................................................................................................2021.00200020
................................................................................................................................................................................................................................................................................................................................ATTATGG---CTCT------GGTACACA...............1921.00200020
.............................................................................................................................................................................................................................................................................................................................GCAATTATGG---CTCT------GGTA...................1820.50100010
...............................................................................................................................................................................................................................................................................................................................AATTATGG---CTCT------GGTACA.................1820.50110000
.........................................................................................................................................................................................................................................................................................................................CAGTGCAATTATGG---CTCT------GGTACACG...............2620.50101000
....................TATTGGACTGGTCAGCCTGTT..................................................................................................................................................................................................................................................................................................................................2120.50100010
...........................CTGGTCAGCCTGTTGTCC..............................................................................................................................................................................................................................................................................................................................1820.50100010
.....................ATTGGACTGGTCAGCCTGTTG.................................................................................................................................................................................................................................................................................................................................2120.50101000
........................................................................................................................................................................................................................................................................................................CTAAACCCCTCGATATACAGTG.............................................2220.50100010
.....................ATTGGACTGGTCAGCCTGT...................................................................................................................................................................................................................................................................................................................................1920.50100010
..........................ACTGGTCAGCCTGTTGTCCT.............................................................................................................................................................................................................................................................................................................................2020.50110000
..................GTTATTGGACTGGTCAGCCTGT...................................................................................................................................................................................................................................................................................................................................2220.50100010
................................................................................................................................................................................................................................................................................................................................ATTATGG---CTCT------GGTACACG...............1920.50110000
..............................GTCAGCCTGTTGTCCTTTGTGC.......................................................................................................................................................................................................................................................................................................................2220.50100010
..................GTTATTGGACTGGTCAGCCTGTTGTCCT.............................................................................................................................................................................................................................................................................................................................2820.50100010
...............................................................................................................................................................................................................................................................................................................................AATTATGG---CTCT------GGTACACAGA.............2220.50100010
..................................................................................................................................................................................................................................................................................................................CGATATACAGTGCAATTATGG---CTCT------.......................2520.50101000
..............................................................................................................................................................................................................................................................................................................................CAATTATGG---CTCT------GGTACAC................2020.50101000
.................................AGCCTGTTGTCCTTTGTGC.......................................................................................................................................................................................................................................................................................................................1920.50100010
droVir3
T-------------------------------------GCTAGCCAGCGTGAATGTAATGAGAATTGACTAGCCAA---A-------------------------A---------------------------------------------------------------------------------------------------------------------------------GCTGTCGCAGCCATGTTTAACTTTA---------------------CCAT-TG--AACAGGCTCTACCAGTCCAAGTGCAGTGCAATGATGGCAGCAATGGAACTCAAACCCAGACCTCGGCAG---ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................CTACCAGTCCAAGTGCAGTGC............................................2112.002000000000000000000000000000000000000000000000000000000000002000
........................................................................................................................................................................................................................................................................................................................GCAGTGCAATGATGGCAGCAATGG...........................2411.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................GTGCAATGATGGCAGCAATG............................2011.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AAGTGCAGTGCAATGATGGC...................................2011.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................GTCCAAGTGCAGTGCAATGATGGC...................................2411.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................AGTGCAATGATGGCAGCAATGGAACTC......................2711.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CCAAGTGCAGTGCAATGATGGC...................................2211.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................GTCCAAGTGCAGTGCAATGATGG....................................2311.001000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................GCTCTACCAGTCCAAGTGCA................................................2011.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGGCGCTGCCAGTGCGAGTGCAATGCAGCGACAACAACAACGGAACTCAGACGCAAACCTCGTCGG---ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................GACAACAACAACGGAACTCAGACGC................2511.001000010
..................................................................................................................................................................................................................................................................................................................................GACAACAACAACGGAACTCA.....................2011.001000010
................................................................................................................................................................................................................................................................................................................................GCGACAACAACAACGGAACTCAGACGC................2711.001000001
..............................................................................................................................................................................................................................................................................................................CAGTGCGAGTGCAATGCAGCGA.......................................2211.001100000
.................................................................................................................................................................................................................................................................................................................................CGACAACAACAACGGAACTCAGACGC................2611.001100000
droGri2
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGG---GTAT------GGAACTCAAACTTCGATGG---ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:55 AM