ID:

dsi_19845

 Coordinate:

3l:11376722-11376871 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.5 -17.5 -17.4 -17.4

Flybase annnotation

five_prime_UTR [3l_11376538_11376721_-]; exon [3l_11375323_11376721_-]; intron [3l_11376722_11380942_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCTTAAAAAGCTAACAAGTAGAAGACCAAAAAATACCCTTTACTTTACAGAAAACCATAGATTTATATGTTACTTCAAATAGAAACAATACTATTAATATCCTTAAGTCCTTATATTTTCTGAGATCTCTTTGCTGAGCCACCTTTGCAACCGGAAACTAGCCAATTAACCCCATTGTGTATCGTGTTGCCTCGTTGCAGGTGAAACTCGCTAATTGTCGGGTGGAAAAAGGTTACCAATACACAGGGCA
**************************************************......................((...(((.((..((((((.((..(((..............((.((((((........((((.(((....))).)))).)))))).))...............)))..)).))))))..)))))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M025
embryo
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
................................................................................................................................................................................GTGTATCGTGTTGCCTCGTTG..................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................AAGGTTACCAATACACAG.... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................TGAGATCGCTTTGATGAGCTA............................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................CATTGTGTATCGTGTTGC............................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TGGCGGGTGGAAAAAGGTGA............... 20 2 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................TGAGATCACTTTGATGAGCTA............................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................................................................CTGAGAGCTCTTTGTTGA................................................................................................................. 18 2 11 0.18 2 0 0 0 0 0 2 0 0
...................................................................................................................................................................................................................TAAGGGTCGGGTAGAAAAA.................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................GTGGAGAAGGGTTACCA............ 17 2 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CTCGCTGATTGTAGTGTGG......................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0
.......................................................................................................TAAGTTCTTATATTTTTTGA............................................................................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGAATTTTTCGATTGTTCATCTTCTGGTTTTTTATGGGAAATGAAATGTCTTTTGGTATCTAAATATACAATGAAGTTTATCTTTGTTATGATAATTATAGGAATTCAGGAATATAAAAGACTCTAGAGAAACGACTCGGTGGAAACGTTGGCCTTTGATCGGTTAATTGGGGTAACACATAGCACAACGGAGCAACGTCCACTTTGAGCGATTAACAGCCCACCTTTTTCCAATGGTTATGTGTCCCGT
**************************************************......................((...(((.((..((((((.((..(((..............((.((((((........((((.(((....))).)))).)))))).))...............)))..)).))))))..)))))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.....................TTCTGGTTTTTTATGGAAA.................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
.........CGTTTGTTCATCCTCAGGTTT............................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 1 0 0
...........................................................................................................AGGAATATATAAGACTCAA............................................................................................................................ 19 2 3 0.33 1 0 0 1 0 0 0
................................................................................TCTTTGTTAGGATAGTTAT....................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0
..........GATTGTTCCTCGTCTGGTT............................................................................................................................................................................................................................. 19 2 7 0.14 1 0 0 0 0 1 0
........................................................................................................................................................CCTTTGATCGGGTAGATGG............................................................................... 19 3 16 0.06 1 0 0 0 0 1 0
...............................................................................................................ATATAAAGGACTCTAGAGA........................................................................................................................ 19 1 16 0.06 1 0 0 0 0 1 0
.............................................................................................................................................................................................GGAGCTACGTCCACCTT............................................ 17 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 02:47 AM