ID:

dsi_19815

Coordinate:

3r:17559448-17559597 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-14.88	-14.88	-14.88

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
A-rich	Low_complexity	Low_complexity	+

mature

star

Sense Strand Reads

AAATGCAACATCGTCAGGCGAGAGATACATATTGGCGGGCGCAGATACAGCTACAGATACAGATACGGATACGGATAAACAGATACATATACACGCGCGAGCGGCGGCAGATAAATTATTTTTCTTGACTTTTTTACTTCTTTTGTGTTTTGCTTTTCTTTTCATCTTTTTATTTTTGTATTTTTTCCTTTTTCACTCAGTTGGCCGAGACGAAGACGTCCAAGCAACTGGTTGCTCTTTGGCTTAATTA ************************************************.....((...(((((((((....((((((.((((............(((((..((((.(((...........................))).))))..)))))..........)))).)))))))))))))))..)).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M025 embryo	SRR902009 testis	SRR553487 NRT_0-2 hours eggs
...........................CGTATTGGTGAGCGCAGA.............................................................................................................................................................................................................	18	3	20	1.10	22	22	0	0	0	0
......................................................................................................................TTGTTCGTGACTTTTTTACT................................................................................................................	20	2	2	1.00	2	2	0	0	0	0
......................................................................................................................TTGTTCGCGACTTTTTTACTTC..............................................................................................................	22	3	1	1.00	1	1	0	0	0	0
.......ACAACCTCAGTCGAGAGATA...............................................................................................................................................................................................................................	20	3	5	0.60	3	0	3	0	0	0
.......................................................GATTCAGATACGGATACGGATAA............................................................................................................................................................................	23	1	2	0.50	1	0	0	1	0	0
...............................................................................................CGCGAGCGGGGGCAGA...........................................................................................................................................	16	1	4	0.25	1	0	1	0	0	0
...................................................TACAGATAGAGATACGGATACGGA...............................................................................................................................................................................	24	1	4	0.25	1	1	0	0	0	0
...............................................................................................................................................................................................................ATACGATGAGGTCCAAGCAA.......................	20	3	5	0.20	1	0	0	0	1	0
....................................................ACAGATACAGATACGGATACG.................................................................................................................................................................................	21	0	6	0.17	1	0	0	1	0	0
...................................................AACAGATACAGATACGGATAC..................................................................................................................................................................................	21	1	20	0.10	2	0	0	0	0	2
.......ACAACCTCAGTCGAGAGAT................................................................................................................................................................................................................................	19	3	14	0.07	1	0	1	0	0	0
.....................................................CAGATACAGATACGGATA...................................................................................................................................................................................	18	0	20	0.05	1	0	0	1	0	0
......................................................AGATACAGATACGGATAC..................................................................................................................................................................................	18	0	20	0.05	1	0	0	1	0	0

Anti-sense strand reads

TTTACGTTGTAGCAGTCCGCTCTCTATGTATAACCGCCCGCGTCTATGTCGATGTCTATGTCTATGCCTATGCCTATTTGTCTATGTATATGTGCGCGCTCGCCGCCGTCTATTTAATAAAAAGAACTGAAAAAATGAAGAAAACACAAAACGAAAAGAAAAGTAGAAAAATAAAAACATAAAAAAGGAAAAAGTGAGTCAACCGGCTCTGCTTCTGCAGGTTCGTTGACCAACGAGAAACCGAATTAAT ************************************************.....((...(((((((((....((((((.((((............(((((..((((.(((...........................))).))))..)))))..........)))).)))))))))))))))..)).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	SRR902009 testis
......................................................................................................................................................................................................TCAACCGGCTCTGCTTCTG.................................	19	0	1	2.00	2	2	0	0	0	0	0	0	0
.......................................................................................................................................................CGAAAAGAAAAGTAGAAA.................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................................................................................................................AAAAGGAACAAGTGA.....................................................	15	1	20	0.70	14	0	0	14	0	0	0	0	0
..........................................................................................................................................................CAAGAAAAGTAGAAA.................................................................................	15	1	20	0.60	12	0	0	3	3	6	0	0	0
............................................................................TTTGTCTATGTATATG..............................................................................................................................................................	16	0	2	0.50	1	0	0	0	1	0	0	0	0
..............................................................................................................TATTTAATAAACAGAACGGAAT......................................................................................................................	22	3	5	0.20	1	0	0	0	0	0	1	0	0
..........................................................................................................................................................AGAGAAAAGTAGAAAAGTAGAAA.........................................................................	23	3	6	0.17	1	0	0	0	0	0	0	1	0
......................................................................................................................................................................................AAAAGGAACAAGTGAG....................................................	16	1	7	0.14	1	0	0	1	0	0	0	0	0
..........AGTAGTCGGCTCTCTATGTG............................................................................................................................................................................................................................	20	3	7	0.14	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................AAAAATAATAACATAAAAAA................................................................	20	1	9	0.11	1	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................................TCTGCTCCATCAGGTTCGT........................	19	3	14	0.07	1	1	0	0	0	0	0	0	0
......................................................................................................................................................................................AAAAGGAAAAGGTGAGTCT.................................................	19	2	16	0.06	1	0	0	0	0	0	1	0	0
..........................................................................................................................AGAACTGAAACCATGATGA.............................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0

Generated: 04/23/2015 at 11:21 PM