dsi_19778

exon [3r_14022113_14022652_-]; CDS [3r_14022113_14022652_-]; exon [3r_14021903_14022047_-]; CDS [3r_14021903_14022047_-]; intron [3r_14022048_14022112_-]

##################################################-----------------------------------------------------------------################################################## GCCCAGAACACATGTGCTATGCTCACCACTTTCAACGAGATCGATATGAGGTGAGTGACGAAACTACAGCATAAAATTGAGCAATAAAACGCATAATCGTTTCTATTGTTTTTAGCTATGCCATGGACTTCCGAAAGCAGAATCTGGATGCGTTCACTAAGAAGT ************************************************.............((.............((((((((.((((......))))..))))))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR902009 testis
.................................................................................................................................TCCGAAAGCAGAATCTGGATGCGTT...........	25	0	1	5.00	5	0	2	1	0	0	2	0	0	0	0	0
...............................................................................................................................CTTCCGAAAGCAGAATCTGGATGCGTT...........	27	0	1	3.00	3	2	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................CCGAAAGCAGAATCTGGATGC..............	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTTCCGAAAGCAGAATCTGGATGCGT............	26	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
................................CAACGAGATCGATATGA....................................................................................................................	17	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......................TCACCACTTTCAACGAGATCGATATGAGC..................................................................................................................	29	1	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TCCGAAAGCAGAATCTGGATGC..............	22	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTTCCGAAAGCAGAATCTGGATGC..............	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................TGAGCTATGCCATGGACTTCCGAAAGC...........................	27	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................CCGAAAGCAGAATCTGGATGG..............	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AGCAGAATCTGGATGCGTTCACT.......	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....GAACACATGTGCTATGCT..............................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................GCAGAATCTGGATGCGTA...........	18	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................GCAGAATCTGGATGCGTTCACTAAGAA..	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................AGCAGAATCTGGATGCGTTCACTA......	24	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................TTCCGAAAGCAGAATCTGGATGC..............	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................GCTATGCCATGGACTTCCGAA..............................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CAGAATCTGGATGCGTTCACT.......	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TGAGCTATGCCATGGACT....................................	18	1	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0
............TGTGCTATGCTCACCACTTTCAACGAGA.............................................................................................................................	28	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................CCGAAAGCAGAATCTGGATGCGTT...........	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CGGAATCTGGATGCGTTCAC........	20	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................TGCCATGGACTTCCGAAAGCAGAATCTG...................	28	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
..............................................TGAGGTCAGTGACGAAGC.....................................................................................................	18	2	7	0.43	3	0	1	0	0	0	0	0	2	0	0	0
..............................................GGAGGTCAGTGACGAAAC.....................................................................................................	18	2	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................GATATGAGCTATGCCATGGAC.....................................	21	3	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0
.GCCGGAACACATGTGCT...................................................................................................................................................	17	2	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................TGAGCTATGCCATGGACC....................................	18	2	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0
.............................................ATGCGGTGAATGACGAAATT....................................................................................................	20	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................TCCGGAACCAGAATGTGGA.................	19	3	15	0.07	1	0	0	0	0	0	0	0	1	0	0	0
.........................................................ACGAAACTGCAGCAGAAAA.........................................................................................	19	2	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1

CGGGTCTTGTGTACACGATACGAGTGGTGAAAGTTGCTCTAGCTATACTCCACTCACTGCTTTGATGTCGTATTTTAACTCGTTATTTTGCGTATTAGCAAAGATAACAAAAATCGATACGGTACCTGAAGGCTTTCGTCTTAGACCTACGCAAGTGATTCTTCA ************************************************.............((.............((((((((.((((......))))..))))))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs
.................................TTGCTCTGGCGATACTCTACT...............................................................................................................	21	3	2	1.00	2	2
..............................................ACCCCACTCACTGCTCTG.....................................................................................................	18	2	6	0.17	1	1

Species	Coordinate	ID	Alignment
droSim2	3r:14021998-14022162 -	dsi_19778	GCCCAGAACACATGTGCTATGCTCACCACTTTCAACGAGATCGATATGAGGTGAGT------------------------------------------------------------------------------GACGAAACT--------ACAG------------CATAAAATTGAGCAATAAAACGCATAA----TCGT--TT------------C---T-------------------------------------ATTGTTTTTAGCTATGCCATGGACTTCCGAAAGCAGAATCTGGATGCG-TTCACTAAGAAGT
droSec2	scaffold_0:14883297-14883461 -		GCCCAGAACACATGTGCTATGCTCACCACTTTCAACGAGATCGATATGAGGTGAGT------------------------------------------------------------------------------GACGAAACT--------AAAG------------CATAAAATTGAGCAATAAAACCCATAA----TCGT--TT------------C---T-------------------------------------ATTGTTTTTAGCTATGCCATGGACTTCCGAAAGCAGAATCTGGATGCG-TTCACTAAGAAGT
dm3	chr3R:7071333-7071510 +		GCCCAGAACACATGTGCCATGCTCACCACTTTCAACGAGGTTGATATGAGGTGAGTGC-------------------------------------------------------------TTGAACGAACTGAGTGACGAAACT--------ACAG------------CATGAAATTGAGCTATAAAACGCATA--------A--TC------------G---T-------------------------------------TTCTTTTTTAGCTATGCCATGGACTTCCGAAAGCAGAATCTGGATGCG-TTCACTAAGAAGT
droEre2	scaffold_4770:14548642-14548831 -		GCCCAAAACACATGTGCTATGCTCACCACTTTTAACGAGATCGATATGAGGTAAGTG--AAAA-------------------------------------------------------------------------------TGATTTCATA-------------------------------------------TTTGTGTAT-------TTCTTAGCTTTATTTCAATTAAAAATTGACGTTTGTAAAATATGAAATTATTATATTTAGCTATGCCATGGACTTCCGTAAGCAGAATTTGGATGCG-TTTACTAAGAAGT
droYak3	3R:11104532-11104729 +		GCCCAAAACACATGTGCTATGCTCACCACCTTTAACGAGGTCGATATGAGGTGAGT--AAAAT-----------------------------------------------------------------------GACGAAAATGGTTCCATA-------------------------------------------TTTTTGTAT-------TTCTTAGCTTTATTTCAATTAAGTAATTATGTTTATCAAATGTGACATTATTTCTTTTAGCTATGCCATGGACTTCCGTAAGCAGAATCTGGATGCG-TTCACTAAGAAGT
droEug1	scf7180000409797:690329-690427 +		CAAAAT----------------------------------------------------------------------------------------------------------------------------------------T--------AC--------------CTTTATACTTGGCAACTAAA------------CCCTTTC------------C---T-------------------------------------TCTTATTTCAGTTACGCCATGAACTTCCGCAAGGAAAATCTGGATGCA-TTCGTTAAAAAAT
droBia1	scf7180000302075:3691043-3691215 -		GCCCAGAACACATGCGCTATGCTCACCACTTTCAACGAGATCGATATGAGGTGAT-GA-------------------------------------------------------------TTGA-----------TTCTAGACT--------AGAGAATACATCAAAACTTTATATTA---------ATCCCCAA----ACTC--TT------------C---A-------------------------------------CCTTTTTCCAGCTACGCCATGGACTTCCGCAAGCAGAATCTGGAAGCA-TTCACCAAGAAGT
droTak1	scf7180000411594:172-271 +		GCGCAGAACACGGCTGCTATCCTGACAACCTTCAACGAGGTTGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAACGCCATGCAGATGCGCGCTGAATATCAGGATGCT-TTTGTAAAGAAGC
droEle1	scf7180000491050:568749-568848 -		GCACAAAACACGGCGGCCATGCTGACAACGTTTAATGAAATCGACATGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCGCTATGGCGCTGCGTGCCGAATATCAGGACTCG-TTTGTTAAAAAGC
droRho1	scf7180000776744:2948-3047 +		TCGCAAAATACTGCTGCAATACTGACCACGTTCAATGAAATTGACATGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTCATGGATCTAAGAGCAAAATATAAGGACGCC-TTTGAAAAAAAAT
droFic1	scf7180000451025:1077-1176 +		GCGCAGAACACGGCTGCTATCCTGACGACCTTTAACGAGGTTGATCTGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAGCTATGGCGCTGCGGAAGGAATATCAGGACGCA-TTTGTGAAAAAGC
droKik1	scf7180000302290:575532-575631 -		GCACAAAACACGGCGGCCATGCTGACAACGTTTAATGAAATCGACATGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCGCTATGGCGCTGCGTGCCGAATATCAGGACTCG-TTTGTTAAAAAGC
droAna3	scaffold_13340:10763196-10763251 -		GCTCAGAATACAACCGCTATGCTTACCACTTTCAACGAAATCGACATGAGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000392616:6764-6863 +		GCACAAAACACGGCGGCCATGCTAACAACGTTTAATGAAATCGACATGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCGCTATGGCGCTGCGTGCCGAATATCAGGACTCG-TTTGTTAAAAAGC
dp5	2:29304882-29305040 -		GCCCAGAACACCACAGCAATGTTGACCACCTTCAACGAGATCGACATGAGGTAAT-GTACAACCGAAAGAGATGCTTGTGACGTGC---------------------------------CCGAAT--------------------------------------------------------------------------TAA--TT------------C---T-------------------------------------CTCCATTGCAGCTACGCCATGAACTTCCGGAAACAAAACCTGGACGCA-TTCGTCAAGAAGT
droPer2	scaffold_6142:704-863 +		GCCCAGAACACCACAGCAATGTTGACCACCTTCAACGAGATCGACATGAGGTAAT-GTACAACCGAAAGAGATGCTTGTGACGTGC---------------------------------CCGAAT--------------------------------------------------------------------------TAA--TT------------C---T-------------------------------------CTCCATTGCAGCTACGCCATGAACTTCCGGAAACAAAACCTGGACGCGATTCGTCAAGAAGT
droWil2	scf2_1100000004902:4418342-4418510 -		GCTCAAAATACGTGTGCTATGCTCACCACCTTCAATGAGATTGACATGAGGTAACTATGCAA----T----------GCGATATGG---------------------------------CCGAGT-----------------T--------TC-----------------TTGATTA---------ATCTTCAACTGTGCCC--CT------------T---T-------------------------------------TTTTGTTTTAGCTATGCCATGGATTTCCGTAAGCAGAACCTTGAAGCT-TTTACTAAGAAAT
droVir3	scaffold_13047:3431460-3431623 -	dvi_15380	GCACAGAACACGTGCGCCATGCTGACCACCTTCAACGAGATTGATATGAGGTAAGTTTGCCA----AA----------G----------------------------------------------------------------------------AACTCTTACATACCTTATAT-A---------ATACA-------------TTTTGTTAT-----CTTTGC---------------------------------------AACGACAGCTACGCAATGGACTTCCGAAAGGCGAACCTGGACGCA-TTCACCAAGAAGC
droMoj3	scaffold_6540:20448601-20448762 -		GCACAGAACACGTGCGCCATGTTGACCACTTTCAATGAAATCGACATGAGGTTAGTTAACGA----AG----------C-------------AGCCTCTAAGTTACTTGTCTTATGTACCTGAA---------------------------------------------------------------------------T------------------CTCTGC---------------------------------------CTCGACAGCTATGCTATGGACTTCCGTAAGCAAAATCTTGATGCA-TTCACCAAGAAGT
droGri2	scaffold_14906:89187-89352 -		GCTCAGAACACGTGCGCCATGTTGACCACCTTCAATGAGATCGACATGAGGTTAGCTGACAT----TA----------T-------TCTGACAGC---TTAGATAA------------------------------------T----------------------------------GGCATC-ATATATCTAA----TCT-----------------GTCTAC---------------------------------------TTTAATAGTTTCGCAATGGAGTTCCGAAAGGCGAACCTCGACGCA-TTCGTTAAAATGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCCCAGAACACATGTGCTATGCTCACCACTTTCAACGAGATCGATATGAGGTGAGT------------------------------------------------------------------------------GACGAAACT--------ACAG------------CATAAAATTGAGCAATAAAACGCATAA----TCGT--TT------------C---T-------------------------------------ATTGTTTTTAGCTATGCCATGGACTTCCGAAAGCAGAATCTGGATGCG-TTCACTAAGAAGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................TCCGAAAGCAGAATCTGGATGCG-TT...........	25	1	5.00	5	0	2	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CTTCCGAAAGCAGAATCTGGATGCG-TT...........	27	1	3.00	3	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CCGAAAGCAGAATCTGGATGC...............	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CTTCCGAAAGCAGAATCTGGATGCG-T............	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CAACGAGATCGATATGA.................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................TCACCACTTTCAACGAGATCGATATGAGC...............................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TCCGAAAGCAGAATCTGGATGC...............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CTTCCGAAAGCAGAATCTGGATGC...............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CCGAAAGCAGAATCTGGATGG...............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TTCACT.......	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAACACATGTGCTATGCT...........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GCAGAATCTGGATGCG-TA...........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GCAGAATCTGGATGCG-TTCACTAAGAA..	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TTCACTA......	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTCCGAAAGCAGAATCTGGATGC...............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GCTATGCCATGGACTTCCGAA...............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CAGAATCTGGATGCG-TTCACT.......	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGTGCTATGCTCACCACTTTCAACGAGA..........................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CCGAAAGCAGAATCTGGATGCG-TT...........	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TGCCATGGACTTCCGAAAGCAGAATCTG....................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

GCCCAGAACACATGTGCTATGCTCACCACTTTCAACGAGATCGATATGAGGTGAGT------------------------------------------------------------------------------GACGAAACT--------AAAG------------CATAAAATTGAGCAATAAAACCCATAA----TCGT--TT------------C---T-------------------------------------ATTGTTTTTAGCTATGCCATGGACTTCCGAAAGCAGAATCTGGATGCG-TTCACTAAGAAGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................CAACGAGATCGATATGAG................................................................................................................................................................................................................................................................................	18	1	3.00	3	2	0	1	0
...........................................................................................................................................................................................................................................................................................CTTCCGAAAGCAGAATCTGGATGC...............	24	1	2.00	2	0	0	1	1
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TTCACTAAGAA..	28	1	2.00	2	0	2	0	0
..............................................................................................................................................................................................................................................................................................CCGAAAGCAGAATCTGGATGC...............	21	1	1.00	1	0	1	0	0
...CAGAACACATGTGCTATG.............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
..........CATGTGCTATGCTCACCACT....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
...........................ACTTTCAACGAGATCGATATGAG................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................CCATGGACTTCCGAAAGC............................	18	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................CTTCCGAAAGCAGAATCTGGATGCG-TT...........	27	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................GCCATGGACTTCCGAAAG.............................	18	1	1.00	1	0	0	1	0
.......................CACCACTTTCAACGAGATCGATATGA.................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...........ATGTGCTATGCTCACCACTTT..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................................GCTATGCCATGGACTTCCGAAA..............................	22	1	1.00	1	0	0	1	0
...........................ACTTTCAACGAGATCGAT.....................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................GCAGAATCTGGATGCG-TT...........	18	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................CTTCCGAAAGCAGAATCTGG...................	20	1	1.00	1	0	0	1	0
.......................CACCACTTTCAACGAGATCGATA....................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TTCACT.......	23	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................................................................CAGAATCTGGATGCG-TTCACT.......	21	1	1.00	1	0	0	1	0
................................CAACGAGATCGATATGAGC...............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TT...........	19	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TTCAC........	22	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................AATCTGGATGCG-TTCACTAAG....	21	1	1.00	1	1	0	0	0

dm3

GCCCAGAACACATGTGCCATGCTCACCACTTTCAACGAGGTTGATATGAGGTGAGTGC-------------------------------------------------------------TTGAACGAACTGAGTGACGAAACT--------ACAG------------CATGAAATTGAGCTATAAAACGCATA--------A--TC------------G---T-------------------------------------TTCTTTTTTAGCTATGCCATGGACTTCCGAAAGCAGAATCTGGATGCG-TTCACTAAGAAGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....GAACACATGTGCCATGCTCACC.......................................................................................................................................................................................................................................................................................................	22	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................TCCGAAAGCAGAATCTGGATGCG-TT...........	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TTCACT.......	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GAATCTGGATGCG-TTCACTAAGA...	23	1	6.00	6	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GAATCTGGATGCG-TTCACTAA.....	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAACACATGTGCCATGCT...........................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................TATGCCATGGACTTCCGAAAGC............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................TTCCGAAAGCAGAATCTGGATGCG-TT...........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AAACT--------ACAG------------CATGAAATTGAGCTATA..........................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGAAAGCATC.........................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCTGGATGCG-TTCACTATC....	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCCCAAAACACATGTGCTATGCTCACCACTTTTAACGAGATCGATATGAGGTAAGTG--AAAA-------------------------------------------------------------------------------TGATTTCATA-------------------------------------------TTTGTGTAT-------TTCTTAGCTTTATTTCAATTAAAAATTGACGTTTGTAAAATATGAAATTATTATATTTAGCTATGCCATGGACTTCCGTAAGCAGAATTTGGATGCG-TTTACTAAGAAGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................................................................................................................................................GCTATGCCATGGACTTCCGT................................	20	1	3.00	3	0	0	0	1	1	1	0
...........................................................................................................................................................................................................................................................................................................TTGGATGCG-TTTACTAAGA...	19	1	2.00	2	0	0	0	0	1	1	0
....................................................................................................................................................................................................................................................................................................GCAGAATTTGGATGCG-TTTACTAAGA...	26	1	2.00	2	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................................................................AGAATTTGGATGCG-TTTACTAAGA...	24	1	2.00	2	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................ATTTGGATGCG-TTTACTAAGA...	21	1	2.00	2	0	0	0	2	0	0	0
.......................CACCACTTTTAACGAGATCGATATGA.................................................................................................................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	1	0	0
.......................CACCACTTTTAACGAGATCGATATGAG................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	1	1	0
.......................................................................................................................................................................................................................................................................................................GAATTTGGATGCG-TTTACTAAGAA..	24	1	2.00	2	0	0	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................GAATTTGGATGCG-TTTACTAAGA...	23	1	1.00	1	0	0	0	0	1	0	0
..CCAAAACACATGTGCTATGCTCACCA......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAGAATTTGGATGCG-TTTACTAAGAA..	28	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................CTATGCCATGGACTTCCGTAAGCAGA.........................	26	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TATGCCATGGACTTCCGTAAGC............................	22	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGTAAGCAG..........................	18	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AGAATTTGGATGCG-TTTACTA......	21	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATGCCATGGACTTCCGTAA..............................	19	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................CCGTAAGCAGAATTTGGATGCG-T............	23	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................AAGCAGAATTTGGATGCG-TTTA.........	22	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................AATTTGGATGCG-TTTACTAAGAAGT	25	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................CTATGCCATGGACTTCCGTAA..............................	21	1	1.00	1	1	0	0	0	0	0	0
.......ACACATGTGCTATGCTCACCACTTT..................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.......................CACCACTTTTAACGAGATCGA......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TTGGATGCG-TTTACTAAGAA..	20	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................GCTATGCCATGGACTTCCGTAAGC............................	24	1	1.00	1	0	1	0	0	0	0	0
............................CTTTTAACGAGATCGATATGA.................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GCTATGCCATGGACTTCCGTAA..............................	22	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGTAAGCAGAA........................	20	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AAGCAGAATTTGGATGCG-TTT..........	21	1	1.00	1	0	0	0	0	1	0	0
.......................CACCACTTTTAACGAGAT.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GGACTTCCGTAAGCAGAATT......................	20	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................GCAGAATTTGGATGCG-TT...........	18	1	1.00	1	0	0	1	0	0	0	0
...........................ACTTTTAACGAGATCGATAT...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......ACACATGTGCTATGCTCACC.......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGTAAGCAGA.........................	19	1	1.00	1	0	0	0	0	0	1	0
...............................TTAACGAGATCGATATGAG................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................ATTTGGATGCG-TTTACTAAGAA..	22	1	1.00	1	0	0	0	0	0	1	0
.....................CTCACCACTTTTAACGAGAT.........................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................GAATTTGGATGCG-TTTACT.......	19	1	1.00	1	1	0	0	0	0	0	0
.......................CACCACTTTTAACGAGATCGATATGAGC...............................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................GATGCG-TTTACTAAGAAGT	19	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................CTATGCCATGGACTTCCGT................................	19	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TTGGATGCG-TTTACTAAG....	18	2	0.50	1	0	0	0	0	0	1	0

droYak3

GCCCAAAACACATGTGCTATGCTCACCACCTTTAACGAGGTCGATATGAGGTGAGT--AAAAT-----------------------------------------------------------------------GACGAAAATGGTTCCATA-------------------------------------------TTTTTGTAT-------TTCTTAGCTTTATTTCAATTAAGTAATTATGTTTATCAAATGTGACATTATTTCTTTTAGCTATGCCATGGACTTCCGTAAGCAGAATCTGGATGCG-TTCACTAAGAAGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................GCCATGGACTTCCGTAAGCAGAAT.......................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
.............................................................................................................................................................................................................................................................................................TCCGTAAGCAGAATCTGGATGCG-TTCACT.......	29	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................TCCGTAAGCAGAATCTGGATGC...............	22	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCTGGATGCG-TTCACTAAGAA..	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................CCGTAAGCAGAATCTGGATGCG-TT...........	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................GTAAGCAGAATCTGGATGCG-TTC..........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................GTAAGCAGAATCTGGATGCG-T............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TT...........	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGTAAGCAGA.........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................CCGTAAGCAGAATCTGGATGC...............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TCTGGATGCG-TTCACTAAGA...	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................ATGCCATGGACTTCCGTAAGC............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CCGTAAGCAGAATCTGGATGG...............	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..CCAAAACACATGTGCTATG.............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CATGGACTTCCGTAAGCAGA.........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................AGCAGAATCTGGATGCG-TTCACT.......	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ATCTGGATGCG-TTCACTAAGAAGT	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................GCTCACCACCTTTAACGAG...........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GGACTTCCGTAAGCAGAATCTGGATGC...............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................CTCACCACCTTTAACGAG...........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGTAAGCAGAAT.......................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................CTTTAACGAGGTCGATATGA.................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CGTAAGCAGAATCTGGATGC...............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................CACCACCTTTAACGAGGTCGATATGAGC...............................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................GCTATGCCATGGACTTCCGT................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................GTAAGCAGAATCTGGATGCG-TT...........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................ATGCTCACCACCTTTAACGAGGT.........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GGACTTCCGTAAGCAGAAT.......................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ATCTGGATGCG-TTCACTAAGA...	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGTAAGCAGAATCT.....................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CAAAAT----------------------------------------------------------------------------------------------------------------------------------------T--------AC--------------CTTTATACTTGGCAACTAAA------------CCCTTTC------------C---T-------------------------------------TCTTATTTCAGTTACGCCATGAACTTCCGCAAGGAAAATCTGGATGCA-TTCGTTAAAAAAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCCAGAACACATGCGCTATGCTCACCACTTTCAACGAGATCGATATGAGGTGAT-GA-------------------------------------------------------------TTGA-----------TTCTAGACT--------AGAGAATACATCAAAACTTTATATTA---------ATCCCCAA----ACTC--TT------------C---A-------------------------------------CCTTTTTCCAGCTACGCCATGGACTTCCGCAAGCAGAATCTGGAAGCA-TTCACCAAGAAGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCGCAGAACACGGCTGCTATCCTGACAACCTTCAACGAGGTTGATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCAACGCCATGCAGATGCGCGCTGAATATCAGGATGCT-TTTGTAAAGAAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCACAAAACACGGCGGCCATGCTGACAACGTTTAATGAAATCGACATGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCGCTATGGCGCTGCGTGCCGAATATCAGGACTCG-TTTGTTAAAAAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCGCAAAATACTGCTGCAATACTGACCACGTTCAATGAAATTGACATGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTCATGGATCTAAGAGCAAAATATAAGGACGCC-TTTGAAAAAAAAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCGCAGAACACGGCTGCTATCCTGACGACCTTTAACGAGGTTGATCTGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAAGCTATGGCGCTGCGGAAGGAATATCAGGACGCA-TTTGTGAAAAAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCACAAAACACGGCGGCCATGCTGACAACGTTTAATGAAATCGACATGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCGCTATGGCGCTGCGTGCCGAATATCAGGACTCG-TTTGTTAAAAAGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCTCAGAATACAACCGCTATGCTTACCACTTTCAACGAAATCGACATGAGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......ATACAACCGCTATGCTTACCACT....................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0
.....GAATACAACCGCTATGCTT..........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................ATGCTTACCACTTTCAACGA............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.....GAATACAACCGCTATGCTTAC........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............GCTATGCTTACCACTTTCAAC..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........AACCGCTATGCTTACCACC....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......ATACAACCGCTATGCTTACCACTTT..................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..........CAACCGCTATGCTTACCACTTTCAACG.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............CCGCTATGCTTACCACTTTCA................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
GCTCAGAATACAACCGCTATGCTTACCA......................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...............GCTATGCTTACCACTTTCAACG.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................GCTTACCACTTTCAACGAAATCGAC.....................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................CTTACCACTTTCAACGAAATC........................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.................TATGCTTACCACTTTCAACG.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......ATACAACCGCTATGCTTACC.......................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................TTCAACGAAATCGACATGAGC...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GCACAAAACACGGCGGCCATGCTAACAACGTTTAATGAAATCGACATGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCGCTATGGCGCTGCGTGCCGAATATCAGGACTCG-TTTGTTAAAAAGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCCCAGAACACCACAGCAATGTTGACCACCTTCAACGAGATCGACATGAGGTAAT-GTACAACCGAAAGAGATGCTTGTGACGTGC---------------------------------CCGAAT--------------------------------------------------------------------------TAA--TT------------C---T-------------------------------------CTCCATTGCAGCTACGCCATGAACTTCCGGAAACAAAACCTGGACGCA-TTCGTCAAGAAGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................ACTTCCGGAAACAAAACCTG....................	20	1	2.00	2	0	1	0	1	0	0	0	0	0	0
.......................GACCACCTTCAACGAGATCGAC.....................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GTTGACCACCTTCAACGAGATC........................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................AAAACCTGGACGCA-TTCGTCAAGA...	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AACAAAACCTGGACGCA-TT...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACCTGGACGCA-TTCGTCA......	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................GGAAACAAAACCTGGACGCA-.............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CTACGCCATGAACTTCCGGA...............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................TTCAACGAGATCGACATGACC...............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................GAACTTCCGGAAACAAAACCTGGAC.................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................ACCACCTTCAACGAGATCGACATG..................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................TCCGGAAACAAAACCTGGACG................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................AACAAAACCTGGACGCA-TTCGTCAAGA...	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGAACTTCCGGAAACAAAACCTGGACG................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAACCTGGACGCA-TTCGTCA......	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................ACAAAACCTGGACGCA-TTCGTC.......	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AAACCTGGACGCA-TTCGTC.......	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................ACTTCCGGAAACAAAACCTGGACG................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....AGAACACCACAGCAATGTTGACCAC.....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

GCCCAGAACACCACAGCAATGTTGACCACCTTCAACGAGATCGACATGAGGTAAT-GTACAACCGAAAGAGATGCTTGTGACGTGC---------------------------------CCGAAT--------------------------------------------------------------------------TAA--TT------------C---T-------------------------------------CTCCATTGCAGCTACGCCATGAACTTCCGGAAACAAAACCTGGACGCGATTCGTCAAGAAGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................GTTGACCACCTTCAACGAGATCGACA....................................................................................................................................................................................................................................................................................	26	1	3.00	3	3	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................GAAACAAAACCTGGACGC...............	18	1	3.00	3	3	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GAACTTCCGGAAACAAAACCTGGAC.................	25	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CTACGCCATGAACTTCCGGAAAC............................	23	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AGCTACGCCATGAACTTCCGG................................	21	1	1.00	1	0	1	0	0	0	0
...........................ACCTTCAACGAGATCGACA....................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....GAACACCACAGCAATGTTG..........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................ATGTTGACCACCTTCAACG.............................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
........CACCACAGCAATGTTGACCACC....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

GCTCAAAATACGTGTGCTATGCTCACCACCTTCAATGAGATTGACATGAGGTAACTATGCAA----T----------GCGATATGG---------------------------------CCGAGT-----------------T--------TC-----------------TTGATTA---------ATCTTCAACTGTGCCC--CT------------T---T-------------------------------------TTTTGTTTTAGCTATGCCATGGATTTCCGTAAGCAGAACCTTGAAGCT-TTTACTAAGAAAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................GCTATGCCATGGATTTCCGT................................	20	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................CATGGATTTCCGTAAGCAGAACC......................	23	1	2.00	2	2	0	0	0	0
.......................CACCACCTTCAATGAGATT........................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
................................................................................................................................................................................................................................................................................................GTAAGCAGAACCTTGAAGCT-.............	20	1	2.00	2	2	0	0	0	0
................................CAATGAGATTGACATGAG................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
..................................................................................................................................................................................................................................................................................................AAGCAGAACCTTGAAGCT-.............	18	1	2.00	2	0	0	0	2	0
.......................CACCACCTTCAATGAGATTG.......................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
................................CAATGAGATTGACATGAGC...............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
................................CAATGAGATTGACATGAGCG..............................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
........TACGTGTGCTATGCTCACCACCTTCAA...............................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................CTATGCCATGGATTTCCGTAAG.............................	22	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................GCTATGCCATGGATTTCCGTAA..............................	22	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................TTGAAGCT-TTTACTAAGA...	18	1	1.00	1	0	0	0	1	0
.......................CACCACCTTCAATGAGATTGACATGA.................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
...............................TCAATGAGATTGACATGAGC...............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
....................GCTCACCACCTTCAATGAGATTGA......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................TTTCCGTAAGCAGAACCTTGAAGCT-.............	25	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATTTCCGTAAGCAGAACCTTG...................	22	1	1.00	1	0	1	0	0	0
.....................CTCACCACCTTCAATGAGATTGACATGAG................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................GCTATGCCATGGATTTCCGTAAGC............................	24	1	1.00	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................AGCTATGCCATGGATTTCCG.................................	20	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................TCCGTAAGCAGAACCTTGAAGCT-.............	23	1	1.00	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................TCCGTAAGCAGAACCTTGAA.................	20	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................GAACCTTGAAGCT-TTTACTAAGAA..	24	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................TAAGCAGAACCTTGAAGCT-.............	19	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GATTTCCGTAAGCAGAACC......................	19	1	1.00	1	1	0	0	0	0
.......................CACCACCTTCAATGAGAT.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0

droVir3

GCACAGAACACGTGCGCCATGCTGACCACCTTCAACGAGATTGATATGAGGTAAGTTTGCCA----AA----------G----------------------------------------------------------------------------AACTCTTACATACCTTATAT-A---------ATACA-------------TTTTGTTAT-----CTTTGC---------------------------------------AACGACAGCTACGCAATGGACTTCCGAAAGGCGAACCTGGACGCA-TTCACCAAGAAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................................................................TACGCAATGGACTTCCGAAAGGCGAACC......................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AATGGACTTCCGAAAGGCGAACCT.....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCACAGAACACGTGCGCCATGTTGACCACTTTCAATGAAATCGACATGAGGTTAGTTAACGA----AG----------C-------------AGCCTCTAAGTTACTTGTCTTATGTACCTGAA---------------------------------------------------------------------------T------------------CTCTGC---------------------------------------CTCGACAGCTATGCTATGGACTTCCGTAAGCAAAATCTTGATGCA-TTCACCAAGAAGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................GACTTCCGTAAGCAAAATCTTGATG................	25	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TATGGACTTCCGTAAGCAAA.........................	20	1	2.00	2	1	0	0	1	0	0
........CACGTGCGCCATGTTGACCACT....................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................TATGGACTTCCGTAAGCAAAATCTT....................	25	1	1.00	1	1	0	0	0	0	0
.....GAACACGTGCGCCATGTTGACCACTTTCA................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................CAAAATCTTGATGCA-TTCACCAAGA...	25	1	1.00	1	1	0	0	0	0	0
...........GTGCGCCATGTTGACCACT....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......ACACGTGCGCCATGTTGACCAC.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................GACTTCCGTAAGCAAAATCTTGAT.................	24	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CTTCCGTAAGCAAAATCTTGATGC...............	24	1	1.00	1	1	0	0	0	0	0
.....GAACACGTGCGCCATGTTGACC.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..ACAGAACACGTGCGCCATGT............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................GACCACTTTCAATGAAATCGACATG..................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGTAAGCAAAAT.......................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................ATGGACTTCCGTAAGCAAAATCTTG...................	25	1	1.00	1	1	0	0	0	0	0

droGri2

GCTCAGAACACGTGCGCCATGTTGACCACCTTCAATGAGATCGACATGAGGTTAGCTGACAT----TA----------T-------TCTGACAGC---TTAGATAA------------------------------------T----------------------------------GGCATC-ATATATCTAA----TCT-----------------GTCTAC---------------------------------------TTTAATAGTTTCGCAATGGAGTTCCGAAAGGCGAACCTCGACGCA-TTCGTTAAAATGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................ATGAGATCGACATGAGCC..............................................................................................................................................................................................................................................................................	18	5	0.20	1	1	0

dsi_19778

3r:14022048-14022112 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads