ID:dsi_19769 |
Coordinate:3r:10198692-10198841 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
five_prime_UTR [3r_10198842_10198855_+]; CDS [3r_10198856_10199842_+]; exon [3r_10198842_10199842_+]; intron [3r_10197013_10198841_+]
No Repeatable elements found
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTAATAAATTAGAGGGGAAATTATACCAGGATTCAATGCCGGTCACGTATTCCCCACAAATCACACACTCAAAAAATAAAATGGTGTACAAGGTCACATATTAAGGGGTCTTGTGCCTTTCGGTTACTCATTTCAATCACATGTGTTTGCACCCGTTGAAATAATTGATACTTTAACTAAAATCATGTTTCAATTCTTAGCAGATTTCCACAACATGCACATCCTCAGCATATCTCTGATGGCGGTCCTG **************************************************...........((.((((..........((((((((.((((((.((((.............))))))))...))))).))))).........)))).)).....(((((((((..((((............)))))))))))))......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M023 head |
O001 Testis |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................................CATATCTCTGATGGCGGCCCT. | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................CATATCTCTGATGGCGGTCCT. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| .........................................................................................................TGGTCTTGTACCTTGCGGTTA............................................................................................................................ | 21 | 3 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 |
| ..............................................................................................................................................................................................................TCCACAACATGCACATCCTC........................ | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 |
| ...................................................................................................................................................................................................................................GCATATCTCTGATGGCGGTCC.. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 |
| .......................................................................................................AGGGGTCTTGTGCCTGACT................................................................................................................................ | 19 | 3 | 12 | 0.08 | 1 | 0 | 0 | 0 | 1 |
| ...................................................................................................................................................................ATTGATACTGTAACT........................................................................ | 15 | 1 | 13 | 0.08 | 1 | 0 | 0 | 0 | 1 |
|
GATTATTTAATCTCCCCTTTAATATGGTCCTAAGTTACGGCCAGTGCATAAGGGGTGTTTAGTGTGTGAGTTTTTTATTTTACCACATGTTCCAGTGTATAATTCCCCAGAACACGGAAAGCCAATGAGTAAAGTTAGTGTACACAAACGTGGGCAACTTTATTAACTATGAAATTGATTTTAGTACAAAGTTAAGAATCGTCTAAAGGTGTTGTACGTGTAGGAGTCGTATAGAGACTACCGCCAGGAC
**************************************************...........((.((((..........((((((((.((((((.((((.............))))))))...))))).))))).........)))).)).....(((((((((..((((............)))))))))))))......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR553488 RT_0-2 hours eggs |
SRR618934 dsim w501 ovaries |
SRR902009 testis |
SRR553487 NRT_0-2 hours eggs |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................TCCTAAGTTCAGGCCAGTGC........................................................................................................................................................................................................... | 20 | 2 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................AGGCCAATGAGTAAAGTTACTG.............................................................................................................. | 22 | 2 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................GTGTTTAGTGTGTGAGTTTTTTATT........................................................................................................................................................................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ....................................ATGGCAATTGCATAAGGGGT.................................................................................................................................................................................................. | 20 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................GTGTTTTACGTTTAGGAGTC...................... | 20 | 2 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................TTTAAAGGTGGTGGACGTGTAG........................... | 22 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ............................................................................................................................ATGAGTAAAGTTACTG.............................................................................................................. | 16 | 1 | 4 | 0.25 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................ATGAGTAAGGTTAGTG.............................................................................................................. | 16 | 1 | 7 | 0.14 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................TGTGAGTTTTTTATT........................................................................................................................................................................... | 15 | 0 | 8 | 0.13 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................GAATCGTCTAAAGCT........................................ | 15 | 1 | 10 | 0.10 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................................................................ATGAGTAGGGTTAATGTACA.......................................................................................................... | 20 | 3 | 14 | 0.07 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .....................................................................................CATGTTCAAGTGTAT...................................................................................................................................................... | 15 | 1 | 16 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................................................................ATGAGTAAGGTTAGT............................................................................................................... | 15 | 1 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .................................................................................................................................................................................................AAGAATCGTCGAAAG.......................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .........................................................TTTAGTGGGGGAGGTTTTTA............................................................................................................................................................................. | 20 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
Generated: 04/24/2015 at 10:36 AM