ID:

dsi_19756

Coordinate:

3r:4362755-4362904 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_4362905_4363026_-]; exon [3r_4362905_4363026_-]; intron [3r_4362243_4362904_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGAGTCCAAGTCGACGATTGGCGTTGAGTTTGCAACGCGCAGCATAGAGGTGAGTACGCTGGCCAAGAACTCGAGGGTGGAGTGGCCCATCGAGCTCCACCCCCAACATCTACCGCACCGCACCCACAGTGGGGGAAGTCACGGGTGAACTTGCGTGTGCGTTTCGATGGGAGGACACGTAGTTGAGGCGTATATCGGAAAATTGGGGGGAAAAGTTTGTTCAATTTGAGTAAGTGTCGAGAATTTCAC ************************************************.((((((((((.......((((((.(((((((((..........)))))))))((..((((...(((((((((..(((.((((......))))..)))....)))).)))))....))))...))...)).))))..))))))).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M053 female body	GSM343915 embryo	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
....GTCCAAGTCGACGATTGGCGTTGA..............................................................................................................................................................................................................................	24	0	1	6.00	6	5	0	0	1	0	0
....GTCCAAGTCGACGATTGGC...................................................................................................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0	0
....GTCCAAGTCGACGATTGGCGT.................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0
.............GACGATTGGCGTTGAGTTTGCA.......................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................ACATGTAGTTGAGGCGTGTA.......................................................	20	2	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................TTGAGTAAGTGTCGA.........	15	0	1	1.00	1	0	0	0	0	1	0
.........................TGAGTTTGCAACGCGCAGCATAGAGGTC.....................................................................................................................................................................................................	28	1	1	1.00	1	0	0	1	0	0	0
..............................TTGCAACGCGCAGCATAGAGGTCGAT..................................................................................................................................................................................................	26	3	1	1.00	1	0	1	0	0	0	0
..GAGTCCAAGTCGACGG........................................................................................................................................................................................................................................	16	1	5	0.20	1	0	0	0	0	0	1
.............GAAGATTGGTGTTGAGTT...........................................................................................................................................................................................................................	18	2	10	0.10	1	0	0	0	0	0	1
........................................CAGCAAAGAGATGAGTACC...............................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

ACCTCAGGTTCAGCTGCTAACCGCAACTCAAACGTTGCGCGTCGTATCTCCACTCATGCGACCGGTTCTTGAGCTCCCACCTCACCGGGTAGCTCGAGGTGGGGGTTGTAGATGGCGTGGCGTGGGTGTCACCCCCTTCAGTGCCCACTTGAACGCACACGCAAAGCTACCCTCCTGTGCATCAACTCCGCATATAGCCTTTTAACCCCCCTTTTCAAACAAGTTAAACTCATTCACAGCTCTTAAAGTG ************************************************.((((((((((.......((((((.(((((((((..........)))))))))((..((((...(((((((((..(((.((((......))))..)))....)))).)))))....))))...))...)).))))..))))))).)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
.................................................................................................................................................................CAAAGCTAGGCTCCTGTG.......................................................................	18	2	1	1.00	1	1	0	0	0	0	0
............................................................................................CTCGATGTAGGGGTGGTAGA..........................................................................................................................................	20	3	8	0.25	2	0	2	0	0	0	0
.....................................................................................................GGGGTTGTAGATCGTGTG...................................................................................................................................	18	2	7	0.14	1	0	0	0	1	0	0
..............................................................................................CGAGATGGGGGTCGTAG...........................................................................................................................................	17	2	11	0.09	1	0	0	1	0	0	0
..........................................................................................AGGTCGAGGTGGGCGTTGT.............................................................................................................................................	19	2	11	0.09	1	0	0	1	0	0	0
...............................................................................................GAGATGGGGGTTGCAGTTG........................................................................................................................................	19	3	16	0.06	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................ACAGTTCTTAAAGTG	15	1	19	0.05	1	0	0	0	0	1	0
.........................................................................................AAGCTCGATGTGGGGG.................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 03:24 AM