ID:dsi_19725 |
Coordinate:3l:11369596-11369745 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
exon [3l_11369422_11369595_-]; CDS [3l_11369422_11369595_-]; intron [3l_11369596_11375322_-]
| Name | Class | Family | Strand |
| AT_rich | Low_complexity | Low_complexity | + |
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTAATCAATTTTATTTATTAAGAGTGGCACTTCGAGGAACGAGGAACACACAATTTATTTTGCCGATTCATTAGTGGAATTTATAAAGACTTTATAATTTAATACACATATTGAGGTAGATGCTTTTATATTATTTTTATTTTTAATAAAATCCTTTGCGCAAAGTGTCCTTGCAATAACCAATCCCTTTTAAATTGCAGAGTTTGTTTGAACTGGAGCTGGCTGGCTGCAACGAGGTGACCGAGGCGGG **************************************************..........((((...(((.(((((....(((((((...))))))).......))).)).)))))))((((((((........(((((((...)))))))..........)))))))).(((((((................)))))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553487 NRT_0-2 hours eggs |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
GSM343915 embryo |
M053 female body |
SRR553486 Makindu_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................TGTTTGAACTGGAGCTGGCTGG........................ | 22 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................TCAGAGTTTGTTTGAACTGGAGCTGGC........................... | 27 | 1 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................TTTAAATTGAAGAGTTTG............................................ | 18 | 1 | 2 | 1.50 | 3 | 0 | 0 | 3 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................TGTTTGAACTGGAGCTGGCTGGTTGCAAC................. | 29 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........TTATTTATTAAGAGTGGCATTTCA........................................................................................................................................................................................................................ | 24 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........TTTATTTATTAAGAGTGGCATTTCA........................................................................................................................................................................................................................ | 25 | 2 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................TAATAAAATCCTGTGCACAAAGTATCCT............................................................................... | 28 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................TTTTGCCGATTTATTAGTGGAATT......................................................................................................................................................................... | 24 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................TGGCTGGTTGCAACGAGGTGACCGA...... | 25 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................TGTTTGAACTGGAGCTGGCTG......................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| TTAATCAATTTTATTTATTAAGAGTGGC.............................................................................................................................................................................................................................. | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................TGTAGTTTGTTTGAACTGGAGCTGGC........................... | 26 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................GGCTGCGACGAGGTGGCCGAG..... | 21 | 2 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........TATTTATTAAGAGTGGCATTTCAGGGA.................................................................................................................................................................................................................... | 27 | 3 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................TAAATTTCAGAGTTTGTTTGAACTGGAGC............................... | 29 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................TGGAGCTGGCTGGTTGCAACGAGGTGA.......... | 27 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...................................GGGACGAGGAACACAAAAGTT.................................................................................................................................................................................................. | 21 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................................................................TAAATTGAAGAGTTTG............................................ | 16 | 1 | 16 | 0.25 | 4 | 0 | 0 | 4 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................TGCGACGAAGTGACCAAGGC... | 20 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................................................................TAAATATCAGAGTTTGTTTGTA...................................... | 22 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................TGAGGTAGAAGGTTATATAT....................................................................................................................... | 20 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...................................................................................................................................................................................................................TCTGGAGCAGGCTGGCTG..................... | 18 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ..........................................................................................................................................................................................ATTTTAAATTGAAGAGTTTG............................................ | 20 | 2 | 9 | 0.11 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ......................................................................................................................................................................................................................................GACGAGGTGGCCGGGGCGGG | 20 | 3 | 17 | 0.06 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................GTTTGAACCGGTGCTGGTT.......................... | 19 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................................................................................................................................................TTTAAATTGAAGAGTT.............................................. | 16 | 1 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
|
AATTAGTTAAAATAAATAATTCTCACCGTGAAGCTCCTTGCTCCTTGTGTGTTAAATAAAACGGCTAAGTAATCACCTTAAATATTTCTGAAATATTAAATTATGTGTATAACTCCATCTACGAAAATATAATAAAAATAAAAATTATTTTAGGAAACGCGTTTCACAGGAACGTTATTGGTTAGGGAAAATTTAACGTCTCAAACAAACTTGACCTCGACCGACCGACGTTGCTCCACTGGCTCCGCCC
**************************************************..........((((...(((.(((((....(((((((...))))))).......))).)).)))))))((((((((........(((((((...)))))))..........)))))))).(((((((................)))))))************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553488 RT_0-2 hours eggs |
O001 Testis |
M024 male body |
SRR553486 Makindu_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................ATTTAACGTCTCAAGGAA.......................................... | 18 | 2 | 8 | 1.25 | 10 | 10 | 0 | 0 | 0 | 0 |
| ....................................................................................................TTATGTGTATAACTCCAT.................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................................................................................................AATTTAACGTCTCAAGGAA.......................................... | 19 | 2 | 5 | 0.60 | 3 | 3 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................ATTTAACGTCTCAAGGA........................................... | 17 | 2 | 20 | 0.55 | 11 | 11 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................AATTTAACGTCTCAA.............................................. | 15 | 0 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................AATTTAACGTCTCAAGGA........................................... | 18 | 2 | 11 | 0.45 | 5 | 5 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................AATTTAACGTCTCAAG............................................. | 16 | 1 | 7 | 0.43 | 3 | 3 | 0 | 0 | 0 | 0 |
| ...................................................CTAGATAAAACGGCTAAG..................................................................................................................................................................................... | 18 | 2 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................................................................ATTTAACGTCTCAAG............................................. | 15 | 1 | 20 | 0.25 | 5 | 5 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................AAAAAAAAAATTATTTTAGCAAGC............................................................................................ | 24 | 3 | 5 | 0.20 | 1 | 0 | 0 | 0 | 1 | 0 |
| ............................................................................................................................................................................................CAATTTAACGTCTCAAGGAA.......................................... | 20 | 3 | 13 | 0.15 | 2 | 2 | 0 | 0 | 0 | 0 |
| .............................GAAGTTCCTTGCTCC.............................................................................................................................................................................................................. | 15 | 1 | 7 | 0.14 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................AAATATTTCTGAAATTT.......................................................................................................................................................... | 17 | 1 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 1 |
| ................................................................................................................................................................................................TTAACGTCTCAAGCA........................................... | 15 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................AAAACTTAAAGTCTCAAACTAA......................................... | 22 | 3 | 10 | 0.10 | 1 | 0 | 0 | 1 | 0 | 0 |
| ..............................................................................................................................................................................................ATTTAACGTCTCAAGTAA.......................................... | 18 | 2 | 19 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................ATTTAACGTCTCAAGGAAG......................................... | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................................................CTGGAACGCTATTGGT.................................................................... | 16 | 2 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................ATTTAACGTCTCAATGAAG......................................... | 19 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 02:41 AM