ID:

dsi_19718

 Coordinate:

2r:5578406-5578555 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.9 -34.6 -34.6

Flybase annnotation

exon [2r_5576308_5578405_+]; CDS [2r_5576308_5578405_+]; intron [2r_5578406_5579185_+]

No Repeatable elements found

mature
  1. dsi_13025  2r:4680240-4680254 +
  2. dsi_19718  2r:5578480-5578494 +
  3. 2r:15587282-15587296 +
  4. 2r:19510803-19510817 -
  5. 3l:501085-501099 +
  6. 3l:4714564-4714578 +
  7. 3l:11122050-11122064 -
  8. 3l:13901745-13901759 -
  9. 3r:14085820-14085834 +
  10. x:174040-174054 -
  11. x:7802937-7802951 -
  12. x:12822825-12822839 -
  13. node_109590:67-81 +
  14. node_102699:114-128 -
  15. node_69960:27-41 +
  16. node_3978:3760-3774 +
  17. node_128624:91-105 -
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGGTGGATCGCATCGTGGCGATGGCCAAGGTTCTGTTTGGCCTGCACATGGTAAGTGCCGGATCAACTCCGTACCAAACGGGATGGGATGTATGGGTGCATCCCAATCTCTATCTCGATCTGTCAAAATTGTAATATTTCAAAATGCACAACTCTGATGCCATCAGTTCGAGTAACTCATCTCTATTGAAACTGTACGGAGCTTTTCTATCTGTGCAACAACTCAAATCTTTCAACTTTAATCTGTTAAT
**************************************************.................(((((((.....(((((((((((((....)))))))).)))))...(((((.(((......(((........)))...(((((....)).)))...))).)))))....(((.......)))....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
..............GTCAGGATGGCCAAGGTTCT........................................................................................................................................................................................................................ 20 3 7 1.14 8 0 8 0 0 0 0 0 0 0 0
...................................................................TCCGTAACCAACCGGATGGGA.................................................................................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........CGCATCGTGGCGATGGCCAAG............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................GCCTGCACATGGTAAGTGCC............................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TGATGTCGTCAGTTCGAGT............................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................CTCTATTCACACTGTACGAAG................................................. 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
....................................................AAGTGCCGGATGAACGCC.................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................CTCTACTGAAACTGTAC..................................................... 17 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
.................................TGTTTGGGCTGCATATGGT...................................................................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AGACTGTACGGCGCGTTTC........................................... 19 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................AAAATTGTAATATTT............................................................................................................... 15 0 17 0.12 2 0 0 1 0 0 0 0 0 1 0
............................................................................................................TATATCTAGATCTCTCAAAA.......................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.......................GCCAAGGTTCGGATTGAC................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...............TCAGGATGGCCAAGGTTCT........................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCCACCTAGCGTAGCACCGCTACCGGTTCCAAGACAAACCGGACGTGTACCATTCACGGCCTAGTTGAGGCATGGTTTGCCCTACCCTACATACCCACGTAGGGTTAGAGATAGAGCTAGACAGTTTTAACATTATAAAGTTTTACGTGTTGAGACTACGGTAGTCAAGCTCATTGAGTAGAGATAACTTTGACATGCCTCGAAAAGATAGACACGTTGTTGAGTTTAGAAAGTTGAAATTAGACAATTA
**************************************************.................(((((((.....(((((((((((((....)))))))).)))))...(((((.(((......(((........)))...(((((....)).)))...))).)))))....(((.......)))....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
...........................................................................................................................................................................................................................TTGAGTTTAGAAAGTGG.............. 17 1 2 1.00 2 2 0 0 0 0
.......................................................................................................................................................................AGCTCAATGAGTCGAGATAAG.............................................................. 21 3 2 0.50 1 0 0 1 0 0
............................................................................................................................................................................................................................TGAGTTTAGGAAGTTG.............. 16 1 3 0.33 1 0 1 0 0 0
............................................................................................................................................................................................................................TGAGTTTAGGAAGTT............... 15 1 19 0.32 6 0 6 0 0 0
...........................................................................................................................................................................................................................ATGAGTTTAGGAAGTTG.............. 17 2 20 0.15 3 0 3 0 0 0
..............................................ATGCCATTCACGGCCTA........................................................................................................................................................................................... 17 2 10 0.10 1 0 1 0 0 0
...........................................................................................................................................................................................................................TCGAGTTTTGAAAGTTGAA............ 19 2 12 0.08 1 0 0 0 1 0
...............................................................................................................................................................GTTAGTCAAGCTCAT............................................................................ 15 1 17 0.06 1 0 0 0 1 0
......................................................CACGGCCTAGTTGAAGT................................................................................................................................................................................... 17 2 17 0.06 1 0 1 0 0 0
...................................................................................................................................................................................AGATTTAACTTTGGCATGC.................................................... 19 3 19 0.05 1 0 0 0 0 1
...................................................................................................................................................................................................TGCCTCGAAGGGATAGAG..................................... 18 3 20 0.05 1 0 0 1 0 0

Generated: 04/23/2015 at 05:20 PM