ID:

dsi_19708

 Coordinate:

x:20419910-20420059 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.0 -27.6 -27.3 -27.2

Flybase annnotation

CDS [x_20420060_20421080_+]; exon [x_20420060_20421080_+]; intron [x_20419120_20420059_+]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
mature
  1. 2l:7327-7350 -
  2. 2l:21339315-21339338 -
  3. 2r:1423444-1423467 -
  4. 2r:12709875-12709898 +
  5. dsi_17893  4:195462-195485 -
  6. dsi_31968  x:16629444-16629467 +
  7. dsi_19708  x:20420001-20420024 +
  8. node_22823:672-695 +
  9. node_22823:6335-6358 +
  10. node_57944:1251-1274 -
star
  1. 2l:20902566-20902580 +
  2. 2l:21096571-21096585 +
  3. 2l:21332493-21332507 +
  4. 2l:22503539-22503553 +
  5. 2r:1332886-1332900 +
  6. 2r:2642297-2642311 +
  7. 2r:7208783-7208797 +
  8. 3l:17880759-17880773 +
  9. 3l:18363816-18363830 +
  10. 3l:22435634-22435648 +
  11. 3l:23073334-23073348 +
  12. 3l:23680544-23680558 +
  13. 3l:23813553-23813567 +
  14. 4:167356-167370 +
  15. 4:894356-894370 +
  16. x:46095-46109 +
  17. x:19184162-19184176 +
  18. x:20111068-20111082 +
  19. dsi_19708  x:20419911-20419925 +
  20. node_27742:5203-5217 +

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGTCACGCCGGTTCGCGTTCGCTTTCACTCTTGCTGAGTAACGGGTATCTGATAGTCGGGGAACTTCCCCCAGCGACTAGACTTTGCCTAGCCCTGATAAACGATCGAGCGTTAACACTAGTCTTTCGGGTTTGAGTACTTGACTATAGCATTCTCTCTTGTTTTTTTTTTTTCTTATTTTGTCAAATTTGTTTCGTAGGGCTAAAGGTCGCCTCCACGAGCTTATGCAAAACGATCGAGAGTTTTCTA
***************************************************((((((((((..((((.(((.((.((((((....((..((((.(((((.....))).)).)))).)))))))).)).)))...)))).))))))))...............)).************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M053
female body
 GSM343915
embryo
 O001
Testis
 SRR902009
testis
 M023
head
 M024
male body
...................................TGAGTAACGGGTATCTGATAGTC................................................................................................................................................................................................ 23 0 20 4.55 91 91 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCCACGAGCTTATGCAAAACGATCGAGA........ 28 0 1 4.00 4 0 1 0 0 1 2 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGTCAAATTTGTTTCGTAGGGCTAAA........................................... 26 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TATTTTGTCAAATTTGTTTCGTAGGGC............................................... 27 0 1 3.00 3 0 0 0 1 2 0 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTATCTGATA................................................................................................................................................................................................... 23 0 8 2.13 17 5 4 1 5 0 0 0 0 0 0 2 0 0
.....................................................................................................................................................................................................TAGGGCTAAAGGTCGCCTCCACGAGC........................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGTCAAATTTGTTTCGTAGGGCTAA............................................ 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCTTATTTTGTCAAATTTGTTTCGTAGGGC............................................... 30 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGTTTCGTAGGGCTAAAGGTCGTC.................................... 24 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CACGAGCTTATGCAAAACGATCGAGAGTT..... 29 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CACGAGCTTATGCAAAACGATCGAGAGT...... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTGTTTCGTAGGGCTAAAGGTCGTC.................................... 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................TTGCTGAGTAACGGGTATCTGATA................................................................................................................................................................................................... 24 0 7 1.71 12 1 3 4 4 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTGTTTCGTAGGGCTAAAGGTCGCC.................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTGCTAAAGGTCGCCTCCACGAGCT.......................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGTCAAATTTGTTTCGTAGGGCTAAAGG......................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTATC........................................................................................................................................................................................................ 18 0 11 1.00 11 0 0 0 0 0 0 0 0 0 11 0 0 0
..........................................................................................................................................................................................................................CGAGCTTATGCAAAACGATCGAGAGTT..... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTATGCAAAACGATCGAGAGTT..... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCGTAGGGCTAAAGGTCGCCTCCACGA............................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TATTTTGTCAAATTTGTTTCGTAGGG................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGGGCTAAAGGTCGCCTCCACGAGCT.......................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGTCAAATTTGTTTCGTAGGGCTAAAGGT........................................ 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TAAAGGTCGCCTCCACGAGCT.......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................TTCACTCTTGCTGAGTAACGGGTATC........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTTTGTCAAATTTGTTTCGTAGGGC............................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CTAAAGGTCGCCTCCACGAGCT.......................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTCTTATTTTGTCAAATTTGTTTCGTAGGGC............................................... 31 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GAGCTTATGCAAAACGATCGAGAGTT..... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGTCAAATTTGTTTCGTAGGGCTA............................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GTTTGTCAAATTTGTTTCGTAGGGC............................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGCTTATGCAAAACGATCGAGAGTT..... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CAAATTTGTTTCGTAGGGCTAAAGGT........................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CACGAGCTTATGCAAAACGATCGAGAG....... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCAAATTTGTTTCGTAGGGCTAAAGGT........................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGCTTATGCAAAACGATCGAGAGT...... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTGTTTCGTAGGGCTAAAGG......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTATGCAAAACGATCGAGAGTTTT... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TATGCAAAACGATCGAGAGTT..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......GCCGGTTCGCGTTCGCTTTCACTCT.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGTCTCCACGAGCTTATGCAAAACGA.............. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................TTGCTGAGTAACGGGTATCTGAT.................................................................................................................................................................................................... 23 0 7 1.00 7 0 4 1 0 0 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TGGCTAAAGGTCGCCTCCAAGA............................. 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TGGCTAAAGGTCGCCTCCACGAGCTTA........................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGACTATAGCATTCTCTCTTGTTT..................................................................................... 24 0 10 0.90 9 3 0 0 0 1 0 4 1 0 0 0 0 0
.............................................................................................................................................TGACTATAGCATTCTCTCTTGTT...................................................................................... 23 0 10 0.80 8 1 0 0 0 0 0 5 2 0 0 0 0 0
..........................................................................................................................................ACTTGACTATAGCATTCTCTCTTGTT...................................................................................... 26 0 9 0.56 5 0 0 2 0 0 0 2 1 0 0 0 0 0
............................................................................................................................................TTGACTATAGCATTCTCTCTTGTTT..................................................................................... 25 0 9 0.56 5 1 0 0 0 3 0 0 1 0 0 0 0 0
...................................TGAGTAACGGGTATCTGATAGTCG............................................................................................................................................................................................... 24 0 20 0.55 11 0 0 11 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTTTTTTTTTTCTTTTTTTGTCAA............................................................... 25 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTATCTGATAGT................................................................................................................................................................................................. 25 0 6 0.50 3 0 0 0 0 2 1 0 0 0 0 0 0 0
...................................TGAGTAACGGGTATCTGATAGTCGGGG............................................................................................................................................................................................ 27 0 20 0.50 10 2 0 0 8 0 0 0 0 0 0 0 0 0
...........................................GGGTATCTGATAGTCGGGGAACT........................................................................................................................................................................................ 23 0 20 0.45 9 0 0 7 0 0 2 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTATCTGA..................................................................................................................................................................................................... 21 0 8 0.38 3 1 0 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................TAAGGTCGCCTTCACGGGCT.......................... 20 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............TTCGCGTTCGCTTTCACTCTAGCTGA.................................................................................................................................................................................................................... 26 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACTTGACTATAGCATTCTCTCTTGTTT..................................................................................... 27 0 9 0.33 3 0 0 0 0 0 0 3 0 0 0 0 0 0
............................................................................................................................................TTGACTATAGCATTCTCTCTTGTTTTTT.................................................................................. 28 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................GGTTAGAGTACTGGACT........................................................................................................ 17 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTATCTGATAGTC................................................................................................................................................................................................ 26 0 6 0.33 2 0 1 0 0 0 1 0 0 0 0 0 0 0
...............................TTGCTGAGTAACGGGTATCTGATT................................................................................................................................................................................................... 24 1 9 0.33 3 0 1 0 0 1 1 0 0 0 0 0 0 0
..............................CTTGCTGAGTAACGGGTATCTGATA................................................................................................................................................................................................... 25 0 7 0.29 2 0 0 1 1 0 0 0 0 0 0 0 0 0
...............................TTGCTGAGTAACGGGTATCTGA..................................................................................................................................................................................................... 22 0 7 0.29 2 0 0 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TGACTATAGCATTCTCTCTTGT....................................................................................... 22 0 11 0.27 3 1 0 0 0 0 0 1 0 1 0 0 0 0
................................TGCTGAGTAACGGGTATCTGAT.................................................................................................................................................................................................... 22 0 8 0.25 2 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTGACTATAGCATTCTCTCTTGTTTTT................................................................................... 27 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................TCTTTTGGATTAGAGTACT............................................................................................................. 19 3 20 0.25 5 0 0 0 0 0 0 0 1 0 0 0 1 3
...............................TTGCTGAGTAACGGGTA.......................................................................................................................................................................................................... 17 0 13 0.23 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTTGACTATAGCATTCTCTCTTGTTT..................................................................................... 26 0 9 0.22 2 0 1 0 0 0 0 0 1 0 0 0 0 0
...........................................GGGTATCTGATAGTCGGGGAACTT....................................................................................................................................................................................... 24 0 18 0.22 4 0 2 0 0 2 0 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTATCTGATAA.................................................................................................................................................................................................. 24 1 14 0.21 3 0 0 0 0 0 0 0 0 0 0 3 0 0
...........................................GGGTATCTGATAGTCGGG............................................................................................................................................................................................. 18 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0
...............................TTGCTGAGTAACGGGTATCTGATAG.................................................................................................................................................................................................. 25 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................ACTTGACTATAGCATTCTCTCTTGT....................................................................................... 25 0 10 0.20 2 0 0 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................................TTAATTTTCTTATTTTGTCGAAT............................................................. 23 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................TTGCTGAGTAACGGGTATCTGAAA................................................................................................................................................................................................... 24 1 13 0.15 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...........................................GGGTATCTGATAGTCGGGGAA.......................................................................................................................................................................................... 21 0 20 0.15 3 0 2 0 0 1 0 0 0 0 0 0 0 0
...................................TGAGTAACGGGTATCTGATAGTCGGGGA........................................................................................................................................................................................... 28 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.........................................ACGGGTATCTGATAGTCGGG............................................................................................................................................................................................. 20 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 3 0 0
..................................................................................................................................................ATAGCATTCTCTCTTGTTT..................................................................................... 19 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................CTTGACTATAGCATTCTCTCTTGTTTA.................................................................................... 27 1 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0
..............................CTTGCTGAGTAACGGGTATCTGAT.................................................................................................................................................................................................... 24 0 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTGACTATAGCATTCTCTCTTGTTTT.................................................................................... 26 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................TCGACTTTGCCTTGCCCAGAT....................................................................................................................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................TCCTGAGTAACGGGTATCTGATAGTC................................................................................................................................................................................................ 26 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTATCTG...................................................................................................................................................................................................... 20 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTGACTATAGCATTCTCTCTTGTT...................................................................................... 24 0 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................TTCGGTTCTGAATACTTGAC......................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................CTTGCTGAGTAACGGGTATC........................................................................................................................................................................................................ 20 0 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TGACTATAGCATTCTCTCTTGTTTT.................................................................................... 25 0 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................TAACTATAGCATTCTCTCTTGTTTTT................................................................................... 26 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................CTTGCTGAGTAACGGGTAT......................................................................................................................................................................................................... 19 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TGACTATAGCATTCTCTC........................................................................................... 18 0 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TATCTGATAGTCGGGGAACT........................................................................................................................................................................................ 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0
.......................................TAACGGGTATCTGATAGTCGGGGAAC......................................................................................................................................................................................... 26 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................AGTAACGGGTATCTGATAGTCG............................................................................................................................................................................................... 22 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TATAGCATTCTCTCTTGTT...................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTGACTATAGCATTCTCTCTTG........................................................................................ 22 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CTCGCGTTAACACTGGTC.............................................................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 2
...................................................GATAGTCGGGGAACT........................................................................................................................................................................................ 15 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................TGCTGAGTAACTGGTATCTGATAG.................................................................................................................................................................................................. 24 1 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................TTGCTGAGTAACGGGTATCG....................................................................................................................................................................................................... 20 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACTTGACTATAGCATTCTCTCTTGC....................................................................................... 25 1 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................TTTCACACTTGCTGAGTAACGGGA........................................................................................................................................................................................................... 24 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................TTGCTGAGTAACGGGT........................................................................................................................................................................................................... 16 0 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTATCTGAA.................................................................................................................................................................................................... 22 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGTA.......................................................................................................................................................................................................... 16 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................TGCTGAGTAACGGGT........................................................................................................................................................................................................... 15 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCTGATAGTCGGGGAACTT....................................................................................................................................................................................... 19 0 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................TGAGTAACGGGTATCTGATAGT................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................AACGGGTATCTGATAGT................................................................................................................................................................................................. 17 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CTCTCTTGTTTTTTT................................................................................. 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................AATTGACTGTAGCATTCTCTCTTG........................................................................................ 24 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................AGTAACGGGTATCTGATAGTC................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................GAGTAACGGGTATCTGA..................................................................................................................................................................................................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................CTTGCTGAGTAACGGAAA.......................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................GTATCTGATAGTCGGG............................................................................................................................................................................................. 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................AACGGGTATCTGATAGTCGGGG............................................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................CGGGTATCTGATAGTCGGGGAA.......................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TAACGGGTATCTGATAGTAGGGGAAC......................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GACTATAGCATTCTCTCTTGTTTTT................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCTTATTTTGTCAAAGTA........................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................TAACGGGTATCTGATAGTCGGG............................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................ACGGGTATCTGATAGTCGGGG............................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTGACTATAGCATTCT.............................................................................................. 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TAACGGGTATCTGATAGTCGGGGA........................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCCAGTGCGGCCAAGCGCAAGCGAAAGTGAGAACGACTCATTGCCCATAGACTATCAGCCCCTTGAAGGGGGTCGCTGATCTGAAACGGATCGGGACTATTTGCTAGCTCGCAATTGTGATCAGAAAGCCCAAACTCATGAACTGATATCGTAAGAGAGAACAAAAAAAAAAAAGAATAAAACAGTTTAAACAAAGCATCCCGATTTCCAGCGGAGGTGCTCGAATACGTTTTGCTAGCTCTCAAAAGAT
*************************************************************************************((((((((((..((((.(((.((.((((((....((..((((.(((((.....))).)).)))).)))))))).)).)))...)))).))))))))...............)).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
 SRR902008
ovaries
.............................................................................................................................................................................AGAATAAAACAGTTTC............................................................. 16 1 6 10.00 60 60 0 0 0 0 0 0 0
.............................................................................................................................................................................AGAATAAAACAGTTTCA............................................................ 17 1 4 2.25 9 9 0 0 0 0 0 0 0
.............................................................................................................................................................................AGAATAAAACAGTTT.............................................................. 15 0 2 1.50 3 3 0 0 0 0 0 0 0
....................GCGAAAGTGAGAACGACTCATTGCC............................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
......GCGTCCAAGCGCTAGCGAA................................................................................................................................................................................................................................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0
......GCGGCCAAGCGCAAGCGAAAGT.............................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................CGAAAGTGAGAACGACTCATTGCC............................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................AGGGTCGCTGATCTG....................................................................................................................................................................... 15 1 8 0.50 4 0 0 1 2 1 0 0 0
..................................................................................................................................................................AAAAAAAAAAAAGACTAAAACGGCTT.............................................................. 26 3 2 0.50 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................AGAATAAAACAGTTTCAT........................................................... 18 2 20 0.35 7 7 0 0 0 0 0 0 0
............................................................................................................................................................................GAGAATAAAACAGTTTC............................................................. 17 2 20 0.25 5 5 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTTTTGCTAGCTGTCA...... 18 2 4 0.25 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................AAAAAAAAAAGCAGATAACAGTT............................................................... 23 3 14 0.21 3 0 0 0 1 1 0 0 1
..............................................................................................................................................................................GAATAAAACAGTTTC............................................................. 15 1 20 0.20 4 4 0 0 0 0 0 0 0
...............................AACGACTCATTGCCCATAGACTATC.................................................................................................................................................................................................. 25 0 5 0.20 1 0 0 0 1 0 0 0 0
.........................................TGCCCATAGACTATCA................................................................................................................................................................................................. 16 0 20 0.20 4 0 4 0 0 0 0 0 0
....GTGCGGCCAAGCTCAAGTGAA................................................................................................................................................................................................................................. 21 2 5 0.20 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................CAAAAAAAAAAAAGAAT........................................................................ 17 0 6 0.17 1 0 1 0 0 0 0 0 0
........GGCCAGGCGCAAGCG................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 1 0 0 0 0 0
...............................AACGACTCATTGCCCATAGAC...................................................................................................................................................................................................... 21 0 7 0.14 1 0 0 0 0 1 0 0 0
............................................................................................................................................................................GAGAATAAAACAGTTTCA............................................................ 18 2 14 0.14 2 2 0 0 0 0 0 0 0
...........................................................................................................................................GAACTGATATCGTAAGAGAGAACAAA..................................................................................... 26 0 9 0.11 1 0 1 0 0 0 0 0 0
..................AAGCGAAAGTGAGATCGACTCAT................................................................................................................................................................................................................. 23 1 10 0.10 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................GAGAATAAAACAGTTTCAT........................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0
..................................................................TGTGGGTCGCTGATCTG....................................................................................................................................................................... 17 2 10 0.10 1 0 1 0 0 0 0 0 0
........GACCAGGCGCAAGCGA.................................................................................................................................................................................................................................. 16 2 20 0.10 2 0 0 2 0 0 0 0 0
...............................AAGGACTCATTGCCCATAGACT..................................................................................................................................................................................................... 22 1 12 0.08 1 1 0 0 0 0 0 0 0
...............................AACGACTCATTGCCCAT.......................................................................................................................................................................................................... 17 0 13 0.08 1 0 1 0 0 0 0 0 0
...............................AACGACTCATTTCCCATAGACTATCAGC............................................................................................................................................................................................... 28 1 18 0.06 1 0 0 0 0 1 0 0 0
..........................................................................................................................................TGAACTGATATCGTAAGAG............................................................................................. 19 0 19 0.05 1 0 1 0 0 0 0 0 0
.......CGACCAGGCGCAAGCGA.................................................................................................................................................................................................................................. 17 2 19 0.05 1 0 0 1 0 0 0 0 0
.....................................................................GGGAGGCTGATCTGATAC................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0
.............................................................................................CGACTCTTTGCTAGTTCG........................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0
...........................................................................................................................................TAATTGATATCGTAAGAGAGAACAAA..................................................................................... 26 2 20 0.05 1 0 0 0 0 1 0 0 0
...............................................................................TCTGTCACGGATCGGG........................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................CGTAAGAGAGAACAAAAAAA................................................................................. 20 0 20 0.05 1 0 1 0 0 0 0 0 0
................................................................GATGTGGGTCGCTGAT.......................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................GAGAATAAAACAGTT............................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................GATAAGGGTCGCTGATCTG....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:20419860-20420109 + dsi_19708 CGGTC---ACG-----------------------------------CCGGTTC---------------------------------------------------------------------------------------------------------------------GCGT--TCGC-TTTCACTCTTGCT---------------------------GAGTAACGGGTATCTGATAGTCGGGGAACTTCCCCCAGCGACTAGACTTTGCCTAGCCCTGATAAACGATCGAGCGTTAACACTAGTCTTTCGGGTTTGAGTACTTGACTATAGCATTCTCTCTTGTTTTTT---------------------------------------------------------------------------------------------------------------TTTT---T--------------------------------------------TCTTATTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------CTAAAGG------TCGCCTCCACGAGCTTATGCAAAA-CGATCG-AGAGTTTTCTA
droSec2 scaffold_55:58955-59127 + CGGTC---ACG-----------------------------------CCGGTTC---------------------------------------------------------------------------------------------------------------------GCGT--TCGC-TTTCACTCTAGCT---------------------------GAGTAACGGGTATCTGATAGTCGGGGAA---------------------------------------------------------------------------CTTGACTATAGCATTCTCTCTTGTTTTTT-----------------------------------------------------------------------------------------------------------------TT---T--------------------------------------------TCTTATTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------CTAAAGG------TCGCCTCCACGAGCTTATGCAAAA-CGATCG-AGAGTTTTCTA
dm3 chr3R:228155-228378 + TTCCC---ACT-------------------------GGCTGAGTAACGGGTATCTGATAGTCGGGGA----ACTTGACTATAGCGTTCCCTCTTGTTTTTTTTAAT--------------------------------------------------------GAAATTTCGCGT--TCGC-ATTCACACTAGCT---------------------------GAGTAACGGGTATCTGATAGTCGGGGAT---------------------------------------------------------------------------TTCGACTATAGCATTCCATCTTGTTTTTT---------------------------------------------------------------------------------------------------------------TTGT---T--------------------------------------------TATTACATAGTCTT---------AGT-----CGCATCA------------------------------CTAAAGA------TT-CTTTTATATTTTTATATAAAA-CAT-------------TC
droEre2 scaffold_4929:20661130-20661374 + CTCTT---ACG-----------------------------------CCCACAC--TT----TACAACATT---------------------------TTTTTAGTTTTTTTTCATTTTATTAATATTTTTTTCCACTTTTTACCGATATTTCAGAAAATTTTGAAATTTCCCTT--TTGG-ACTTCCACTAGCT---------------------------GTGTAACGGGTATCTGATAGTCGGGGAA---------------------------------------------------------------------------CTCGACTATAGCATTCTATCATGTTTTTTT--------TCTGTCA-----------------AATTTCTATTGGTATAAAAAAAA---------------------------------------------------------------------------------------------------------------------------------CATT-------------------------------TT--------------GG------TCACGCCCA----------CAAAA-CGACAA-AAAGTTTC--C
droYak3 v2_chrUn_922:600-803 - CGTTT---AAG-----------------------------------ACTCTCC----------------------------------------------------------------------------------------------------------------------TTT--TCC---CTTTCACTAGCT---------------------------GAGTAACGGGTATCAGATAGTCGGGGAA---------------------------------------------------------------------------CTCGACTATAGCGTTCTCTCTTGTTTTTTATTTTTTTTTCGCTCAATACAGCGACCCCGGTGGA------------------------------------------------------------------------------------------------------TTTTTT---------------------------TTGTTCCGATTATCACATTTTTTT----------ATGCGTTGTCCTGCGCCCCCACATCCTGTCTAAATTG------ATG-----------------------CG-ATAAT----TT
droEug1 scf7180000409676:313527-313745 + CGCAGTG-ACG-----------------------------------TCACTATCAGTTACTCAACATGCT---------------------------TTCTCCGAC--------------------------------------------------------AATAGGTGGCGCTTGGGGAATTTCCACTAGCAATATGAATATTTTAAAATTGTGTAAAATAGTAAAGGGTATATTTTAGTCGAGGCA---------------------------------------------------------------------------CTCGACTATAGCGTTTCCTCTTGTTTCTG-----------------------------------------------------------------------------------------------------------------AT------------TC----------------------------------GGTTTCTTC---------------------------AA----------------------------TGGAAAGAA---AAATG-TTCTCAAATTTTTATGGG------AATGTAAAGT---TCG
droBia1 scf7180000296926:470-672 - TGGTA---GCT-----------------------------------TTTCTAC---------------------------------------------------------------------------------------------------------------------GTAT--AT---ATTTTCATTATCT---------------------------GAGTAACGGTTATCTGATAGTCAAGGCA---------------------------------------------------------------------------CTCTACTATAGCGTTCTCCCTTGTTTTT--------------------------------------------GGTATAAAACAGTTAAAGGATAAAGTGCCTTTAAAAGTCATCGTTTTTTGATT-CT------------TTTC--------------------------------------------------------------------------------TCCAAT----------------------------TTTTTAAATTTT------ATTTTATAATT---TTTTAATTTTTTAA-ACTTTTTTTGT
droTak1 scf7180000413225:9538-9774 + TGTTT---ATATATCTATTTCCCTCGCTCTCCCTTTAGCTGAGGATTGATTATAAGTTAGTCGGGACACCAACCCGAGTAC----------------------------------------------------------------------------------------AGCGT--TCGC-ACTCCCTTTAGCT---------------------------GAGTGACGAGTATTAGATAGTCGGGACACCAA-----------------------------------------------------------------------CCCGGCTATAACGTTCTCTCTTGTTTTATATA------------------------------------------------------------------------------------------------------------TTCT---T--------------------------------------------TTTTATGTTTTTAA---------GATTTTT---GAGGG------------------------------TTAGATC------TCTTCGAAATAAAC---GGTAAAA-TGAGTA-AGAGTT---TT
droEle1 scf7180000491255:11068-11175 - CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTCGGGGATCGAT-----------------------------------------------------------------------TGCGACTATAGGGTTCTTTCTTGTTTTTT-----------------------------------------------------------------------------------------------------------------TTTGTATATATAATTTAATATTCAATTTTT-----------------------------------------------------TAGTA------------------------------TTACAG------------CCTACGAGTCTTTAGAAAA-------------------
droRho1 scf7180000760877:534-729 - TCTCC---CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC-ACTCCCTTTACCT---------------------------GAGTAACGGGTATCTGATAGTCGGGGCA---------------------------------------------------------------------------CCCGACTATAGCGTTCTCTCTTGTTTAA-----------------------------------------------------------------------------------------------------------------------------GATTAGAAAATCGCATTTTTATCGTGAAAGCTTTTCTTATTTTAATTTGGGGT---------GGTTGTTACGT-GGGTTAATG-GCCGTCTTGCGCTT----------------------------GGACGGGCTCACTGAATG-CCAACT-AGGG-----TA
droFic1 scf7180000454015:83348-83421 + TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATCGGATATCTCATAGTCGAGGCA---------------------------------------------------------------------------CTCGACTATAGCTTTACCTCTTCC------------------------------------------------GGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAA-CTACCG-CAAGTT-----
droKik1 scf7180000302132:11910-12008 - TAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTTTCTTGTTTTTT---------------------------------------------------------------------------------------------------------------TTTT---T---------AATTATTCGTAATGA-------------------------TTGTGCCGA---------GTTCGTT--------------------------------------CGAAAAA------TC------GTTACTGTATGCAAAA-AAAACC-AAATATTCTTG
droAna3 scaffold_13335:3160651-3160744 + TTTTT---TTT-----------------------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------------------------TTTT---T--------------------------------------------TTTTATCTCTTTAG---------GTTTTTTTTTTTGAA----------------------------CGCCAGGAA------TTATATATACAATT---TTCAAAT-TAAAAG-GTAGTTTTCGA
droBip1 scf7180000394800:4964-5088 + TTGGT---GGA-----------------------------------CTCTTCTCAGTCGCTCGA-----------------------------------TTCTTCCCTCGCTGGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATATTTCTCCGCTTCTCAACACTAAACACTGCACTTTTTTCTAGTTTTTT-----------------------------------------------------------------------------------------------------------------TT---------------------------------------------TA-AGTTTTTTTGTTGG---------ATTTGT---------------------------------------------------------------------------------------------TT
dp5 2:28153066-28153137 + CTAAT---TTT-----------------------------------TTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT-----------------------------------------------------------------------------------------------------------------TCCCCATATTATTCTTTATTTTCTTTTTTT-----------------TT-GTTCCTTTCTTTAA---------ATATAT---------------------------------------------------------------------------------------------TT
droPer2 scaffold_3399:434-521 - CACTA---ATA-----------------------------------TTCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCG---------------------------------------------------------------CGGCTGTAAGTGCGAGACGGGTGTTGTCTTTTTTTCATTTT---------------------------------------------------------------------------------------------------------------TTTT---T--------------------------------------------TTTTTTTTTGCTTA---------TCTCGTTT------------------------------------------------------------------------------------------TGT
droWil2 scf2_1100000004909:7230905-7230989 + TTCTT---ATG-----------------------------------CTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTAATATTTGTGATTT-----------------------------------------------------TAGCG------------------------------CCAAAGG------CCGACTTCATGAACTAATGCAAAA-CGATCG-CGAGTTTACCA
droVir3 scaffold_13050:2148293-2148418 + ATGGG---GTG-----------------------------------TCAAC----------CAAATCGCT---------------------------TTTTCGGGC-----------------------------------------------------------------------------ATTGATAATCT---------------------------TATTAA------------------------------------------------------------------------------------------------------T---GGTATCAGCTACTATGTTTT-------------------------------------------------------------------------------------------------TT------------T-GT---TTCTGCGTTTCGGAACTTAAGTTTA-----------------------------------------------------TTGGG------------------------------CTAGAGT------TTGACTCCACTAG----------------------------TT
droMoj3 scaffold_6473:4931825-4931945 + TTTGCTTAGCT-----------------------------------GCAAT----------AAATTCGAA---------------------------CT------------------------------------------------------------------------------------------------------------------------------CAAGAGCATTCAATGGTCGTTGCT---------------------------------------------------------------------------TTTGAT------GTCTTTAGGTATTGTGTT----------------------------------------------------------------------------------------------TTCCTTTTTTTTTTTTTTTT---T--------------------------------------------TTTTTTTTTTTGGA---------ATATGAAT------------------------------------------------------------------------------------------CGT
droGri2 scaffold_6768:5173-5257 + TACCG---CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATTGGGCTCA---------------------------------------------------------------------------CTCGATTTCAGCATTCTTACTTGTTTTGTC----------------------------------------------------------------------------------------------TCT-------------TTTA---T--------------------------------------------TTTTATTTACTCAT---------TTTTATGTTT----------------------------------------------------------------------------------------TAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGGTC---ACG-----------------------------------CCGGTTC---------------------------------------------------------------------------------------------------------------------GCGT--TCGC-TTTCACTCTTGCT---------------------------GAGTAACGGGTATCTGATAGTCGGGGAACTTCCCCCAGCGACTAGACTTTGCCTAGCCCTGATAAACGATCGAGCGTTAACACTAGTCTTTCGGGTTTGAGTACTTGACTATAGCATTCTCTCTTGTTTTTT---------------------------------------------------------------------------------------------------------------TTTT---T--------------------------------------------TCTTATTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------CTAAAGG------TCGCCTCCACGAGCTTATGCAAAA-CGATCG-AGAGTTTTCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................23204.5591000000000091000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGAGCTTATGCAAAA-CGATCG-AGA........2814.00400000001120000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAA---------ATTTGTTTCGTAGGG------------------------------CTAAA...................................................2613.00300000000000030000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------C.......................................................2713.00300000000200010000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATCTGATA................................................................................................................................................................................................................................................................................................................................................................................................................2382.131700000014005052000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGG------------------------------CTAAAGG------TCGCCTCCACGAGC.............................2612.00200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAA---------ATTTGTTTCGTAGGG------------------------------CTAA....................................................2512.00200000000000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------C.......................................................3012.00200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAGCTTATGCAAAA-CGATCG-AGAGTT.....2912.00200000000200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAGCTTATGCAAAA-CGATCG-AGAGT......2812.00200000002000000000
.............................................................................................................................................................................................TTGCT---------------------------GAGTAACGGGTATCTGATA................................................................................................................................................................................................................................................................................................................................................................................................................2471.711200000043001040000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTCGTAGGG------------------------------CTAAAGG------TCGCC......................................2611.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAA---------ATTTGTTTCGTAGGG------------------------------CTAAAGG------...........................................2811.00100000001000000000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................18111.0011000011000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTTATGCAAAA-CGATCG-AGAGTT.....2711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCAAAA-CGATCG-AGAGTT.....2211.00100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAGGG------------------------------CTAAAGG------TCGCCTCCACGA...............................2711.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------........................................................2611.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGG------------------------------CTAAAGG------TCGCCTCCACGAGCT............................2611.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAA---------ATTTGTTTCGTAGGG------------------------------CTAAAGG------T..........................................2911.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGG------TCGCCTCCACGAGCT............................2111.00100000000001000000
......................................................................................................................................................................................TTCACTCTTGCT---------------------------GAGTAACGGGTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------C.......................................................2511.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGG------TCGCCTCCACGAGCT............................2211.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------TCTTATTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------C.......................................................3111.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTATGCAAAA-CGATCG-AGAGTT.....2611.00100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAA---------ATTTGTTTCGTAGGG------------------------------CTA.....................................................2411.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTATGCAAAA-CGATCG-AGAGTT.....2511.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---------ATTTGTTTCGTAGGG------------------------------CTAAAGG------T..........................................2611.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAGCTTATGCAAAA-CGATCG-AGAG.......2711.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA---------ATTTGTTTCGTAGGG------------------------------CTAAAGG------T..........................................2711.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTATGCAAAA-CGATCG-AGAGT......2411.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTCGTAGGG------------------------------CTAAAGG------...........................................2111.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGCAAAA-CGATCG-AGAGTTTT...2411.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCAAAA-CGATCG-AGAGTT.....2111.00100000000001000000
..........G-----------------------------------CCGGTTC---------------------------------------------------------------------------------------------------------------------GCGT--TCGC-TTTCACTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
.............................................................................................................................................................................................TTGCT---------------------------GAGTAACGGGTATCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................2371.00700010014010000000
......................................................................................................................................................................................................................................................................................................................................TGACTATAGCATTCTCTCTTGTTT..................................................................................................................................................................................................................................................................................................24100.90900410000103000000
......................................................................................................................................................................................................................................................................................................................................TGACTATAGCATTCTCTCTTGTT...................................................................................................................................................................................................................................................................................................23100.80800520000001000000
...................................................................................................................................................................................................................................................................................................................................ACTTGACTATAGCATTCTCTCTTGTT...................................................................................................................................................................................................................................................................................................2690.56500210020000000000
.....................................................................................................................................................................................................................................................................................................................................TTGACTATAGCATTCTCTCTTGTTT..................................................................................................................................................................................................................................................................................................2590.56500010000301000000
.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAGTCG............................................................................................................................................................................................................................................................................................................................................................................................................24200.5511000000110000000000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATCTGATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................2560.50300000000210000000
.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAGTCGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................27200.501000000000002080000
....................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGAACT.....................................................................................................................................................................................................................................................................................................................................................................................................23200.45900000070020000000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................2180.38300000010001001000
...................................................................................................................................................................................................................................................................................................................................ACTTGACTATAGCATTCTCTCTTGTTT..................................................................................................................................................................................................................................................................................................2790.33300300000000000000
.....................................................................................................................................................................................................................................................................................................................................TTGACTATAGCATTCTCTCTTGTTTTTT---------------------------------------------------------------------------------------------------------------................................................................................................................................................................................2830.33100000010000000000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATCTGATAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................2660.33200000001010000000
.............................................................................................................................................................................................TTGCT---------------------------GAGTAACGGGTATCTGATT................................................................................................................................................................................................................................................................................................................................................................................................................2490.33300000001110000000
............................................................................................................................................................................................CTTGCT---------------------------GAGTAACGGGTATCTGATA................................................................................................................................................................................................................................................................................................................................................................................................................2570.29200000010000010000
.............................................................................................................................................................................................TTGCT---------------------------GAGTAACGGGTATCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................2270.29200010010000000000
......................................................................................................................................................................................................................................................................................................................................TGACTATAGCATTCTCTCTTGT....................................................................................................................................................................................................................................................................................................22110.27300100000001100000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................2280.25200000010001000000
.....................................................................................................................................................................................................................................................................................................................................TTGACTATAGCATTCTCTCTTGTTTTT................................................................................................................................................................................................................................................................................................2740.25100000000100000000
.............................................................................................................................................................................................TTGCT---------------------------GAGTAACGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................17130.23300000000003000000
....................................................................................................................................................................................................................................................................................................................................CTTGACTATAGCATTCTCTCTTGTTT..................................................................................................................................................................................................................................................................................................2690.22200010001000000000
....................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGAACTT....................................................................................................................................................................................................................................................................................................................................................................................................24180.22400000002200000000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATCTGATAA...............................................................................................................................................................................................................................................................................................................................................................................................................24140.21300000000000003000
....................................................................................................................................................................................................................................GGGTATCTGATAGTCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................18200.20400000004000000000
.............................................................................................................................................................................................TTGCT---------------------------GAGTAACGGGTATCTGATAG...............................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000000010000000
...................................................................................................................................................................................................................................................................................................................................ACTTGACTATAGCATTCTCTCTTGT....................................................................................................................................................................................................................................................................................................25100.20200200000000000000
....................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................21200.15300000002100000000
.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAGTCGGGGA........................................................................................................................................................................................................................................................................................................................................................................................................28200.15300000003000000000
..................................................................................................................................................................................................................................ACGGGTATCTGATAGTCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................20200.15300000000000003000
...........................................................................................................................................................................................................................................................................................................................................ATAGCATTCTCTCTTGTTT..................................................................................................................................................................................................................................................................................................19200.15300000000003000000
....................................................................................................................................................................................................................................................................................................................................CTTGACTATAGCATTCTCTCTTGTTTA.................................................................................................................................................................................................................................................................................................27200.15300300000000000000
............................................................................................................................................................................................CTTGCT---------------------------GAGTAACGGGTATCTGAT.................................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000010000000000
.....................................................................................................................................................................................................................................................................................................................................TTGACTATAGCATTCTCTCTTGTTTT.................................................................................................................................................................................................................................................................................................2680.13100000010000000000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................2090.11100000001000000000
.....................................................................................................................................................................................................................................................................................................................................TTGACTATAGCATTCTCTCTTGTT...................................................................................................................................................................................................................................................................................................2490.11100100000000000000
............................................................................................................................................................................................CTTGCT---------------------------GAGTAACGGGTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................2090.11100010000000000000
......................................................................................................................................................................................................................................................................................................................................TGACTATAGCATTCTCTCTTGTTTT.................................................................................................................................................................................................................................................................................................2590.11100010000000000000
............................................................................................................................................................................................CTTGCT---------------------------GAGTAACGGGTAT......................................................................................................................................................................................................................................................................................................................................................................................................................1990.11100000000001000000
......................................................................................................................................................................................................................................................................................................................................TGACTATAGCATTCTCTC........................................................................................................................................................................................................................................................................................................18190.11200000000002000000
.......................................................................................................................................................................................................................................TATCTGATAGTCGGGGAACT.....................................................................................................................................................................................................................................................................................................................................................................................................20200.10220000000000000000
................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGGGAAC......................................................................................................................................................................................................................................................................................................................................................................................................26200.10200000020000000000
..............................................................................................................................................................................................................................AGTAACGGGTATCTGATAGTCG............................................................................................................................................................................................................................................................................................................................................................................................................22200.10200000011000000000
..........................................................................................................................................................................................................................................................................................................................................TATAGCATTCTCTCTTGTT...................................................................................................................................................................................................................................................................................................19200.10200000000002000000
.....................................................................................................................................................................................................................................................................................................................................TTGACTATAGCATTCTCTCTTG.....................................................................................................................................................................................................................................................................................................22100.10100000000001000000
............................................................................................................................................................................................................................................GATAGTCGGGGAACT.....................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000000002000000
.............................................................................................................................................................................................TTGCT---------------------------GAGTAACGGGTATCG....................................................................................................................................................................................................................................................................................................................................................................................................................20130.08100000000001000000
...................................................................................................................................................................................................................................................................................................................................ACTTGACTATAGCATTCTCTCTTGC....................................................................................................................................................................................................................................................................................................25130.08100100000000000000
.............................................................................................................................................................................................TTGCT---------------------------GAGTAACGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................16140.07100000000001000000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTATCTGAA.................................................................................................................................................................................................................................................................................................................................................................................................................22150.07100000000000010000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................16160.06100000000001000000
..............................................................................................................................................................................................TGCT---------------------------GAGTAACGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................15170.06100000000001000000
.........................................................................................................................................................................................................................................TCTGATAGTCGGGGAACTT....................................................................................................................................................................................................................................................................................................................................................................................................19190.05100100000000000000
.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000010000000
.................................................................................................................................................................................................................................AACGGGTATCTGATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................CTCTCTTGTTTTTT---------------------------------------------------------------------------------------------------------------T...............................................................................................................................................................................15200.05100000001000000000
..............................................................................................................................................................................................................................AGTAACGGGTATCTGATAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000010000
.............................................................................................................................................................................................................................GAGTAACGGGTATCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000010000000000
......................................................................................................................................................................................................................................GTATCTGATAGTCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
.................................................................................................................................................................................................................................AACGGGTATCTGATAGTCGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000000001000
...................................................................................................................................................................................................................................CGGGTATCTGATAGTCGGGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................GACTATAGCATTCTCTCTTGTTTTT................................................................................................................................................................................................................................................................................................25200.05100000000000010000
................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000001000000
..................................................................................................................................................................................................................................ACGGGTATCTGATAGTCGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000010000
.....................................................................................................................................................................................................................................................................................................................................TTGACTATAGCATTCT...........................................................................................................................................................................................................................................................................................................16200.05100000000001000000
................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGGGA........................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000000000010000
droSec2
CGGTC---ACG-----------------------------------CCGGTTC---------------------------------------------------------------------------------------------------------------------GCGT--TCGC-TTTCACTCTAGCT---------------------------GAGTAACGGGTATCTGATAGTCGGGGAA---------------------------------------------------------------------------CTTGACTATAGCATTCTCTCTTGTTTTTT-----------------------------------------------------------------------------------------------------------------TT---T--------------------------------------------TCTTATTTTGTCAA---------ATTTGTTTCGTAGGG------------------------------CTAAAGG------TCGCCTCCACGAGCTTATGCAAAA-CGATCG-AGAGTTTTCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAAA-CGATCG-AGAGT......1911.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGG------TCGCCTCCACGAGCTTATGC.......................2711.0010010
..........................................................................................................................................................................................CTCTAGCT---------------------------GAGTAACGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710001
.................................................................................................................................................................................................................................................TCGGGGAA---------------------------------------------------------------------------CTTGACTATAGCATTCTC..........................................................................................................................................................................................................................................................................................................2660.1710001
.............................................................................................................................................................................................TAGCT---------------------------GAGTAACGGGTATCTG...................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001
................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
dm3
TTCCC---ACT-------------------------GGCTGAGTAACGGGTATCTGATAGTCGGGGA----ACTTGACTATAGCGTTCCCTCTTGTTTTTTTTAAT--------------------------------------------------------GAAATTTCGCGT--TCGC-ATTCACACTAGCT---------------------------GAGTAACGGGTATCTGATAGTCGGGGAT---------------------------------------------------------------------------TTCGACTATAGCATTCCATCTTGTTTTTT---------------------------------------------------------------------------------------------------------------TTGT---T--------------------------------------------TATTACATAGTCTT---------AGT-----CGCATCA------------------------------CTAAAGA------TT-CTTTTATATTTTTATATAAAA-CAT-------------TCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAGTCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................262012.9525900000000000000000000000000000000000000000100000010000000000000000000000000000000000003000000000000000000000000000000100000000000000000000000000024000016000000300000000000000000000000000000000000000001000006050000000000001015100000000000000020000000000020000000000000000000000000000000000000000000017000042000000000000000000010000000000
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........................................................................................................................................................................TCGCGT--TCGC-ATTCACACTAGCT---------------------------GAG................................................................................................................................................................................................................................................................................................................................................................................................................................26202.004000000000000000000000000000000000000000100000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000202003030000000000000000000000000000000000000000000000000030000000000000200000500000000000000000000000000000000000000000000000000000000000000000001000010000031000000000000000000200000
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.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAGTCGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................27201.853700000000000000000000001000000000000000000000000000003000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000902000000000000000000000000000000000000000000000000000010000000000000000000000000001300000000000000000300100000
.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAGT..............................................................................................................................................................................................................................................................................................................................................................................................................22201.803600000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000001000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000100000000000000000000000000000000000008050000000000000000000000000130000000
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.................................................................................................................................................................................................T---------------------------GAGTAACGGGTATCTGATAG...............................................................................................................................................................................................................................................................................................................................................................................................................21201.5030000000000000000000000010000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000011000001100000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................ACACTAGCT---------------------------GAGTAACGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................21201.45290000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000020000000000010000000000000000010000000000000000100000000000000000800000000000000000000208010000200000000000000000000000000
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......................................................................................................................................................................................TTCACACTAGCT---------------------------GAGTAACGGGTATCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................29201.402800000000000000000000000000000000000000001000000000000000000100000000000000000110080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................TATCTGATAGTCGGGGA----ACTTGACTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2681.25100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014200000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AACGGGTATCTGATAGTCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.25250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000020000000000000000122000000000000020000000000100000010000000000000000000000000000000000000000020000000008000000000000200000000
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......................................................................................................................................................................TTTCGCGT--TCGC-ATTCACACTAGCT---------------------------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................27201.25250000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000000000000000000000000000000000000000000000000000000040103170000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000101000000
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.......................................................................ACTTGACTATAGCGTTCCCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------TTGT---T--------------------------------------------TATTACATAGTCTT---------AGT-----.............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------AGT-----CGCATCA------------------------------CTAAAGA------TT-........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..........T-------------------------GGCTGAGTAACGGGTATCTGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................GA----ACTTGACTATAGCGTTCCCTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................TAGCGTTCCCTCTTGTTTTTTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................CGCGT--TCGC-ATTCACACTAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.95190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000010000000000000000000000000000000000000030000100000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000230000100000000000000001030
.....................................................................................................................................................................................ATTCACACTAGCT---------------------------GAGTAACGGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................25200.90180000000000000000000000000000000000002000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000002011000000200000000000000000000000000000000010001000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001020000000
...........................................TAACGGGTATCTGATAGTCGGGGA----ACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.801600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001012000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................TCACACTAGCT---------------------------GAGTAACGGGTATCT....................................................................................................................................................................................................................................................................................................................................................................................................................26200.80160000000000000000000000000000000000000001000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000001001020000000000000000000000000000000000010000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
......................................................................................................................................................................TTTCGCGT--TCGC-ATTCACACTAGCT---------------------------GAG................................................................................................................................................................................................................................................................................................................................................................................................................................28200.80160000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000002000000000500000000000000000111000000
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.............................................................................................................................................................................T--TCGC-ATTCACACTAGCT---------------------------GAGTAACGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................28200.75150000000000000000000000000000000000001010100010000000200000000000000000000000020020000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................TAGCT---------------------------GAGTAACGGGTATCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................22200.75150000000000030000000000000000000000000000000000001000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000
........................................................................................................................................................................................CACACTAGCT---------------------------GAGTAACGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................20200.70140000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000010800000
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.............................................................................................................................................................................T--TCGC-ATTCACACTAGCT---------------------------GAGTAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................26200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000002000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
................................................................................................................................................................................................................................TAACGGGTATCTGATAGTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................21200.55110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000100000020000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000500000
...........................................................................................................................................................................................ACTAGCT---------------------------GAGTAACGGGTATCTGA..................................................................................................................................................................................................................................................................................................................................................................................................................24200.55110000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000030000100000000000000001000000000
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.............................................................................................................................................................................................TAGCT---------------------------GAGTAACGGGTATCTGATAGTCG............................................................................................................................................................................................................................................................................................................................................................................................................28200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droEre2
CTCTT---ACG-----------------------------------CCCACAC--TT----TACAACATT---------------------------TTTTTAGTTTTTTTTCATTTTATTAATATTTTTTTCCACTTTTTACCGATATTTCAGAAAATTTTGAAATTTCCCTT--TTGG-ACTTCCACTAGCT---------------------------GTGTAACGGGTATCTGATAGTCGGGGAA---------------------------------------------------------------------------CTCGACTATAGCATTCTATCATGTTTTTTT--------TCTGTCA-----------------AATTTCTATTGGTATAAAAAAAA---------------------------------------------------------------------------------------------------------------------------------CATT-------------------------------TT--------------GG------TCACGCCCA----------CAAAA-CGACAA-AAAGTTTC--CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................ATCTGATAGTCGGGGAA---------------------------------------------------------------------------CTCGACT.....................................................................................................................................................................................................................................................................................................................24200.0510000100
....................................................................................................................................................................................................................................GGGTATCTGATAGTCGGGGAA---------------------------------------------------------------------------CTCGAC......................................................................................................................................................................................................................................................................................................................27200.0510000100
droYak3
CGTTT---AAG-----------------------------------ACTCTCC----------------------------------------------------------------------------------------------------------------------TTT--TCC---CTTTCACTAGCT---------------------------GAGTAACGGGTATCAGATAGTCGGGGAA---------------------------------------------------------------------------CTCGACTATAGCGTTCTCTCTTGTTTTTTATTTTTTTTTCGCTCAATACAGCGACCCCGGTGGA------------------------------------------------------------------------------------------------------TTTTTT---------------------------TTGTTCCGATTATCACATTTTTTT----------ATGCGTTGTCCTGCGCCCCCACATCCTGTCTAAATTG------ATG-----------------------CG-ATAAT----TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................CACTAGCT---------------------------GAGTAACGGGTATCAGATAG...............................................................................................................................................................................................................................................................................................................................................................................................................28200.30600600000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTGTCCTGCGCCCCCACATCCTG.......................................................2740.25101000000000
.....................................................................................................................................................................................................................................................................................................................................TCGACTATAGCGTTCTCTCTTGTTTT.................................................................................................................................................................................................................................................................................................26200.20404000000000
..TTT---AAG-----------------------------------ACTCTCC----------------------------------------------------------------------------------------------------------------------TTT--TCC---CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100000000
droEug1
CGCAGTG-ACG-----------------------------------TCACTATCAGTTACTCAACATGCT---------------------------TTCTCCGAC--------------------------------------------------------AATAGGTGGCGCTTGGGGAATTTCCACTAGCAATATGAATATTTTAAAATTGTGTAAAATAGTAAAGGGTATATTTTAGTCGAGGCA---------------------------------------------------------------------------CTCGACTATAGCGTTTCCTCTTGTTTCTG-----------------------------------------------------------------------------------------------------------------AT------------TC----------------------------------GGTTTCTTC---------------------------AA----------------------------TGGAAAGAA---AAATG-TTCTCAAATTTTTATGGG------AATGTAAAGT---TCGSizeHit CountTotal NormTotal
No Reads
droBia1
TGGTA---GCT-----------------------------------TTTCTAC---------------------------------------------------------------------------------------------------------------------GTAT--AT---ATTTTCATTATCT---------------------------GAGTAACGGTTATCTGATAGTCAAGGCA---------------------------------------------------------------------------CTCTACTATAGCGTTCTCCCTTGTTTTT--------------------------------------------GGTATAAAACAGTTAAAGGATAAAGTGCCTTTAAAAGTCATCGTTTTTTGATT-CT------------TTTC--------------------------------------------------------------------------------TCCAAT----------------------------TTTTTAAATTTT------ATTTTATAATT---TTTTAATTTTTTAA-ACTTTTTTTGTSizeHit CountTotal NormTotal
No Reads
droTak1
TGTTT---ATATATCTATTTCCCTCGCTCTCCCTTTAGCTGAGGATTGATTATAAGTTAGTCGGGACACCAACCCGAGTAC----------------------------------------------------------------------------------------AGCGT--TCGC-ACTCCCTTTAGCT---------------------------GAGTGACGAGTATTAGATAGTCGGGACACCAA-----------------------------------------------------------------------CCCGGCTATAACGTTCTCTCTTGTTTTATATA------------------------------------------------------------------------------------------------------------TTCT---T--------------------------------------------TTTTATGTTTTTAA---------GATTTTT---GAGGG------------------------------TTAGATC------TCTTCGAAATAAAC---GGTAAAA-TGAGTA-AGAGTT---TTSizeHit CountTotal NormTotal
No Reads
droEle1
CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTCGGGGATCGAT-----------------------------------------------------------------------TGCGACTATAGGGTTCTTTCTTGTTTTTT-----------------------------------------------------------------------------------------------------------------TTTGTATATATAATTTAATATTCAATTTTT-----------------------------------------------------TAGTA------------------------------TTACAG------------CCTACGAGTCTTTAGAAAA-------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCTCC---CT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CGC-ACTCCCTTTACCT---------------------------GAGTAACGGGTATCTGATAGTCGGGGCA---------------------------------------------------------------------------CCCGACTATAGCGTTCTCTCTTGTTTAA-----------------------------------------------------------------------------------------------------------------------------GATTAGAAAATCGCATTTTTATCGTGAAAGCTTTTCTTATTTTAATTTGGGGT---------GGTTGTTACGT-GGGTTAATG-GCCGTCTTGCGCTT----------------------------GGACGGGCTCACTGAATG-CCAACT-AGGG-----TASizeHit CountTotal NormTotal
No Reads
droFic1
TG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATCGGATATCTCATAGTCGAGGCA---------------------------------------------------------------------------CTCGACTATAGCTTTACCTCTTCC------------------------------------------------GGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAA-CTACCG-CAAGTT-----SizeHit CountTotal NormTotal
No Reads
droKik1
TAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCCTTTCTTGTTTTTT---------------------------------------------------------------------------------------------------------------TTTT---T---------AATTATTCGTAATGA-------------------------TTGTGCCGA---------GTTCGTT--------------------------------------CGAAAAA------TC------GTTACTGTATGCAAAA-AAAACC-AAATATTCTTGSizeHit CountTotal NormTotal
No Reads
droAna3
TTTTT---TTT-----------------------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------------------------TTTT---T--------------------------------------------TTTTATCTCTTTAG---------GTTTTTTTTTTTGAA----------------------------CGCCAGGAA------TTATATATACAATT---TTCAAAT-TAAAAG-GTAGTTTTCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTGGT---GGA-----------------------------------CTCTTCTCAGTCGCTCGA-----------------------------------TTCTTCCCTCGCTGGCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATATTTCTCCGCTTCTCAACACTAAACACTGCACTTTTTTCTAGTTTTTT-----------------------------------------------------------------------------------------------------------------TT---------------------------------------------TA-AGTTTTTTTGTTGG---------ATTTGT---------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
dp5
CTAAT---TTT-----------------------------------TTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTT-----------------------------------------------------------------------------------------------------------------TCCCCATATTATTCTTTATTTTCTTTTTTT-----------------TT-GTTCCTTTCTTTAA---------ATATAT---------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CACTA---ATA-----------------------------------TTCGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCG---------------------------------------------------------------CGGCTGTAAGTGCGAGACGGGTGTTGTCTTTTTTTCATTTT---------------------------------------------------------------------------------------------------------------TTTT---T--------------------------------------------TTTTTTTTTGCTTA---------TCTCGTTT------------------------------------------------------------------------------------------TGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTCTT---ATG-----------------------------------CTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGTAATATTTGTGATTT-----------------------------------------------------TAGCG------------------------------CCAAAGG------CCGACTTCATGAACTAATGCAAAA-CGATCG-CGAGTTTACCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-CGATCG-CGAGTTTACC.1911.00110000
droVir3
ATGGG---GTG-----------------------------------TCAAC----------CAAATCGCT---------------------------TTTTCGGGC-----------------------------------------------------------------------------ATTGATAATCT---------------------------TATTAA------------------------------------------------------------------------------------------------------T---GGTATCAGCTACTATGTTTT-------------------------------------------------------------------------------------------------TT------------T-GT---TTCTGCGTTTCGGAACTTAAGTTTA-----------------------------------------------------TTGGG------------------------------CTAGAGT------TTGACTCCACTAG----------------------------TTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................AC----------CAAATCGCT---------------------------TTTTCGGGC-----------------------------------------------------------------------------ATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------------------TTGGG------------------------------CTAGAGT------TTGACTCCACTAG----------------------------TT2911.001000000100000000000000000000000000000000000000000000000000000000
.........TG-----------------------------------TCAAC----------CAAATCGCT---------------------------TTTTCGGGC-----------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------------------TTGGG------------------------------CTAGAGT------TTGACTCCAC.................................2411.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................TATTAA------------------------------------------------------------------------------------------------------T---GGTATCAGCTACTATGTTT................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TGTTTT-------------------------------------------------------------------------------------------------TT------------T-GT---TTCTGCA..................................................................................................................................................................18150.071000000000000000000000000001000000000000000000000000000000000000
droMoj3
TTTGCTTAGCT-----------------------------------GCAAT----------AAATTCGAA---------------------------CT------------------------------------------------------------------------------------------------------------------------------CAAGAGCATTCAATGGTCGTTGCT---------------------------------------------------------------------------TTTGAT------GTCTTTAGGTATTGTGTT----------------------------------------------------------------------------------------------TTCCTTTTTTTTTTTTTTTT---T--------------------------------------------TTTTTTTTTTTGGA---------ATATGAAT------------------------------------------------------------------------------------------CGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTTTT---T--------------------------------------------T...........................................................................................................................19200.153000030
................................................................................................................................................................................................................................................................................................................................................................TT----------------------------------------------------------------------------------------------TTCCTTTTTTTTTTTTTTTT---T--------------------------------------------T...........................................................................................................................24200.102000020
................................................................................................................................................................................................................................................................................................................................................................TT----------------------------------------------------------------------------------------------TTCCTTTTTTTTTTTTTTTT---T--------------------------------------------............................................................................................................................23200.051000010
.................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------TTCCTTTTTTTTTTTTTTT.............................................................................................................................................................................20200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTTTTTTTTTTTT---T--------------------------------------------TTTTTTT.....................................................................................................................25200.051000010
droGri2
TACCG---CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTATTGGGCTCA---------------------------------------------------------------------------CTCGATTTCAGCATTCTTACTTGTTTTGTC----------------------------------------------------------------------------------------------TCT-------------TTTA---T--------------------------------------------TTTTATTTACTCAT---------TTTTATGTTT----------------------------------------------------------------------------------------TAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 04:50 PM