ID:

dsi_19702

Coordinate:

3r:17556907-17557056 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GACCCAACTGCCCAACTGCACTGGACACATCATCTCTGTGGCCGTTCAAGGTGAATTTCAGTTGTGTCGACCGCAGACAACGTGACAGGCCCTCGACCACCATGAATTGCGAACTGTAGATGTAGATGCAGCAGCAGACTCGAGACCCATCCGTCGCACCCATTTCAATTTAATTCACATTTTCAGCACATTAAAGAGTGCGGGCTTAAAGCTGCGGAATATTCATATTTATGTTTGTGGAATTCGCACA ************************************************(((((((..(((((((((.......))))..(((((.((..(((((..........((((...(((((........)))))..))))..)))))..))....)))))........))))).)))))))........(((........)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries
..............................CATCTCTGTGGCCGTTCAAG........................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................GTAGATGCAGCAGCTGACGC.............................................................................................................	20	2	6	0.17	1	0	0	0	1	0	0
..............................................................................................................GAACTGTAGATTTTGATCC.........................................................................................................................	19	3	20	0.10	2	0	0	2	0	0	0
..................................................CGGAATTTCAGTTGTATCGA....................................................................................................................................................................................	20	3	13	0.08	1	0	1	0	0	0	0
..................................................GTTAATATCAGTTGTGTTGA....................................................................................................................................................................................	20	3	15	0.07	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................TATTTAGCTGTGTGGAATTC.....	20	3	16	0.06	1	0	0	0	0	0	1
..............................................................................................................................................AGTCCCATCGGTCGCACCA.........................................................................................	19	3	16	0.06	1	0	0	1	0	0	0
.............................................................................................................................................................................................................TTAAAGCTGCGGAAAA.............................	16	1	18	0.06	1	0	1	0	0	0	0
........................................................................................................................................................................TTTAATTTACATGTTCAGGA..............................................................	20	3	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................ACGTTAAAAAGTGCGGG..............................................	17	2	20	0.05	1	0	0	1	0	0	0
................................TCTTTGCGGCCGTTCAA.........................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0
............................................................................................................................................................................................................................ATTCATGTTTATGTAAGTGG..........	20	3	20	0.05	1	0	1	0	0	0	0

Anti-sense strand reads

CTGGGTTGACGGGTTGACGTGACCTGTGTAGTAGAGACACCGGCAAGTTCCACTTAAAGTCAACACAGCTGGCGTCTGTTGCACTGTCCGGGAGCTGGTGGTACTTAACGCTTGACATCTACATCTACGTCGTCGTCTGAGCTCTGGGTAGGCAGCGTGGGTAAAGTTAAATTAAGTGTAAAAGTCGTGTAATTTCTCACGCCCGAATTTCGACGCCTTATAAGTATAAATACAAACACCTTAAGCGTGT ************************************************(((((((..(((((((((.......))))..(((((.((..(((((..........((((...(((((........)))))..))))..)))))..))....)))))........))))).)))))))........(((........)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
.................................................................................CACTGTCCGGGAATTGGTGA.....................................................................................................................................................	20	3	3	0.33	1	1	0	0
.....................................................................................................................................................................GTTAAATTAAGTTTAAATGTCAT..............................................................	23	3	3	0.33	1	0	1	0
...................................................................................................................................................GTTGGCAGCGTGCGTAAA.....................................................................................	18	2	6	0.17	1	1	0	0
........................................................................................................................................................................................TCGTGTAGTTTCTACCGCCC..............................................	20	3	7	0.14	1	0	0	1

Generated: 04/23/2015 at 11:13 PM