ID:

dsi_1967

 Coordinate:

3l:7455501-7455650 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.6 -24.4 -24.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCTGTTGCCAGTGGTAACCGAAGCAATTGTGTTTAATGCGGCTCTTTGCATTGGCCCATTGCCTGTGCATGTGCCGCGAGCCAAAGAACTTTGGCCCATTTGAAATGCGGCAATTGTGTATCTGGCGGATACACAAGCGCACTCTGAACTCCACACGTGTCTGAGGTCTTTTTCTTAGCTTTTTTCCTCTGCATTTTCAGGCTGACACGAACATCGAGACAGGGCGAGCAGAAGCAGCTGTTACTGGTTC
*************************************************************************(((((.((((((....))))))..........)))))...((((((((((...))))))))))..((.(((.((((.......)).)).))))).********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
......................................................................................................................................................CCACACGTGTCTGAGGTC.................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GACACGAACATCGAGACA............................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................CCGCGAGCCAAAGAACTT............................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGAGATCTTTTTGTTAGCTGTTT.................................................................. 23 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................CGTTTCGGAGGGCTTTTTCTT.......................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..................................................................................GAAGAACGTTGACCCATTTGA................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................CGTTTCGGAGGGCTTTTTCT........................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................TAGCCCATTTGAAAT................................................................................................................................................ 15 1 20 0.15 3 0 0 0 0 0 3 0 0 0 0
........................................................................................................................................................................................................................AGACAGGTCGAGCAGGAAC............... 19 3 20 0.10 2 0 0 0 0 0 0 2 0 0 0
.......................................................................................................................................................................................................................................AAGTAGCTGACACTGGTTC 19 3 14 0.07 1 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................CGCGTCTGCGGGCTTTTTCT........................................................................... 20 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................CTTAGCTTATTTCCT.............................................................. 15 1 18 0.06 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................GCTACGCAAGAGCACTCT......................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................TTTCAGGCTGATGCGAA....................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GGACAACGGTCACCATTGGCTTCGTTAACACAAATTACGCCGAGAAACGTAACCGGGTAACGGACACGTACACGGCGCTCGGTTTCTTGAAACCGGGTAAACTTTACGCCGTTAACACATAGACCGCCTATGTGTTCGCGTGAGACTTGAGGTGTGCACAGACTCCAGAAAAAGAATCGAAAAAAGGAGACGTAAAAGTCCGACTGTGCTTGTAGCTCTGTCCCGCTCGTCTTCGTCGACAATGACCAAG
**********************************************************************************(((((.((((((....))))))..........)))))...((((((((((...))))))))))..((.(((.((((.......)).)).))))).************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..........................................................................................................................................................TGCACAGACTCCAGAG................................................................................ 16 1 2 0.50 1 1 0 0
.......................................................................................................................................TCGCGTGAGACTGGAGG.................................................................................................. 17 1 3 0.33 1 1 0 0
............................................................................................................................................................................................................CATGCTTGTAGCTCTATCCC.......................... 20 3 6 0.17 1 0 1 0
...................................................................................................................................................................................AAAAAAGTAGATGTAGAAGTC.................................................. 21 3 8 0.13 1 0 0 1

Generated: 04/24/2015 at 09:41 AM