ID:

dsi_19665

 Coordinate:

3r:10197013-10197162 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3r_10196915_10197012_+]; exon [3r_10196915_10197012_+]; intron [3r_10197013_10198841_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGTTATAGTTGTATATCGGTGCCACTTAAGCCTACGTACACTTGAAGAAGGTATTTCCCAGTGCTCATCCAGTTGTGTCTGTCCCAATTTGTTCAACTCCCCCCGGCAATTGTGACGATCATTAAACGAACGAATCGGGTTGAAATTAAAGCGTCGTCTATTATTGTAACACTAATCAGCATGCAAATGATTGCACAATTGCACATACATACGTAGATATACAAATGTTTATGCATATAGCGATTTGAAT
**************************************************.........((((..((..((.(((((((((........((((............(((((...((((((..((((...(((.......)))....))))...))))))....))))))))).....))).)))))).))..))..)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
......AGTTGTATATCGGTGCCACTTA.............................................................................................................................................................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0 0 0
..............ATCGGTGCCACTTAAGCC.......................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................TGTGCCTGTCCCAATTTGTTCAACTC....................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................TGTCCCAATTTGTTGAACTCCCCCCGGC............................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
......AGTTGTATATCGGTGCCA.................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................AATCGGGTTAAAATT....................................................................................................... 15 1 20 0.55 11 0 0 3 1 0 0 3 4
..............................................................................................................................................AAATTAACGCGTCGTCAAT......................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0 0 0
..........................................................................................GTTCAAATCCCCCCGG................................................................................................................................................ 16 1 2 0.50 1 0 0 0 1 0 0 0 0
...................................................................................................................................GAATCGGGTTAAAATT....................................................................................................... 16 1 7 0.43 3 0 0 2 0 0 0 1 0
..........................................................................................GTTCGACTCCCCCCGGGA.............................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................AACTGCACATACATACGTA................................... 19 1 3 0.33 1 0 0 0 1 0 0 0 0
............................................................................................................................................TGAAATTAAAGTGTCGT............................................................................................. 17 1 3 0.33 1 0 0 0 0 0 1 0 0
............................................................GTACGCATCCAGTTCTGTCT.......................................................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0
...................................................................................................................................GAATCGGGTTAAAAT........................................................................................................ 15 1 19 0.11 2 0 0 0 0 0 0 0 2
.................................................................................................................................AGGAATCGGGTTAAAAT........................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0
..........................................................................................GTTCGACTCCCCTCGG................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................TATGCAGATAGCGAT...... 15 1 20 0.05 1 0 0 0 0 0 1 0 0

Anti-sense strand reads

TCAATATCAACATATAGCCACGGTGAATTCGGATGCATGTGAACTTCTTCCATAAAGGGTCACGAGTAGGTCAACACAGACAGGGTTAAACAAGTTGAGGGGGGCCGTTAACACTGCTAGTAATTTGCTTGCTTAGCCCAACTTTAATTTCGCAGCAGATAATAACATTGTGATTAGTCGTACGTTTACTAACGTGTTAACGTGTATGTATGCATCTATATGTTTACAAATACGTATATCGCTAAACTTA
**************************************************.........((((..((..((.(((((((((........((((............(((((...((((((..((((...(((.......)))....))))...))))))....))))))))).....))).)))))).))..))..)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 M024
male body
.......................................................................................................................................................................TGGTGATTAGTCGTACGTCT............................................................... 20 2 1 2.00 2 2 0 0 0 0 0
....................................................................................................GGGGCCGTTAACACTGCTAGTAATT............................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................TTAGTCGAAAGTTTACTA........................................................... 18 2 14 0.43 6 0 0 6 0 0 0
..........................................................................................CAGTTTGAGGGGGACCGTTA............................................................................................................................................ 20 3 10 0.20 2 0 0 0 2 0 0
............................................................................CAGACAGGATTAAACAGGTA.......................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0
.........................................................................................................................................CCAAGTTTAAATTCGCAGTA............................................................................................. 20 3 9 0.11 1 0 0 0 0 1 0
...........................GTCGGATGCATGGGAA............................................................................................................................................................................................................... 16 2 20 0.10 2 0 2 0 0 0 0
....................................................................GGACAACACAAACAGGGT.................................................................................................................................................................... 18 2 11 0.09 1 0 1 0 0 0 0
..........................................................................................................................................................................................................TGTAGGTATGCATCGATGTG............................ 20 3 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 10:37 AM