ID:

dsi_19658

 Coordinate:

2r:4784219-4784368 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_4784369_4784947_+]; exon [2r_4784369_4784947_+]; intron [2r_4784027_4784368_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATATAACGCACTATTACTCAAATCAACTTCAATTCAGCCACGACTTTGGCTCTGCAATGACAATATGACTCTCCAAAATAACTAGAATTTTTGATTCCAACTTTTTGTACAGAATTGTTATTGCTTAGCTGAAATGCTCTATTTTCGGCCGCTTTCTTTTAGTATACGCATGTAAACTAAAACCTTTCCGATCTTTCCAGATAACAGCGTGAGCGGCAGCAGCTCGGTCAGCAATGTGACGGCAGGCGTT
**************************************************...(((((((((((.....(((.(((((......(((((...))))).....)))))...))))))))))))))...(((((((........))))))).......(((((((.(((....))).)))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 O002
Head
 SRR902009
testis
 M023
head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
ATATAACGCACTATTACTCA...................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................CAGCAGCTCGGTCAGCA................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGTGAGCGGCAGCAGCTCGGTC..................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................TAGTTATTGCTTAGCGGAA..................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGCGTGAGCGGCAGCAGCTCGGTC..................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................AGCTCGGTCAGCAATGTGA........... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................ATAACTAGAATTTTTGGT........................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................TCTGCAATGACAATATGACTCTT................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................GTAGCGCGGTCAGCAATG.............. 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................GTAGCTCGGACTGCAATGTG............ 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0
..................................................................................................................TAGTTATTGCTCAGCGGAAA.................................................................................................................... 20 3 13 0.15 2 2 0 0 0 0 0 0 0 0
.......................CAACTTCAATTCAGACTCGT............................................................................................................................................................................................................... 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GCGGCAGTAGCTCAGTCGG................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TATATTGCGTGATAATGAGTTTAGTTGAAGTTAAGTCGGTGCTGAAACCGAGACGTTACTGTTATACTGAGAGGTTTTATTGATCTTAAAAACTAAGGTTGAAAAACATGTCTTAACAATAACGAATCGACTTTACGAGATAAAAGCCGGCGAAAGAAAATCATATGCGTACATTTGATTTTGGAAAGGCTAGAAAGGTCTATTGTCGCACTCGCCGTCGTCGAGCCAGTCGTTACACTGCCGTCCGCAA
**************************************************...(((((((((((.....(((.(((((......(((((...))))).....)))))...))))))))))))))...(((((((........))))))).......(((((((.(((....))).)))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
.....................TGGTTGAAGTTAAGTCTGAGC................................................................................................................................................................................................................ 21 3 4 0.50 2 2 0 0 0 0
............................................................................................CTAAGGTTGAAGTACATCTC.......................................................................................................................................... 20 3 9 0.22 2 0 0 2 0 0
..........................................................................................................................................................................................CGGCTGGAAAGGTCTA................................................ 16 2 20 0.15 3 1 1 0 0 1
...........................................................................................................................................................................................GGCTTGAAAGGTCTA................................................ 15 1 8 0.13 1 0 1 0 0 0
........................................................................................................................................................................................AGAGGCTAGTAGGGTCTAT............................................... 19 3 18 0.11 2 0 2 0 0 0
.............................................................................................TAAGGTTGCAACCCATGTC.......................................................................................................................................... 19 3 10 0.10 1 0 0 0 1 0
.....................TGGTTGAAGTTAAGTCTG................................................................................................................................................................................................................... 18 2 13 0.08 1 1 0 0 0 0
................................AAGTCGGAGCTGAATCC......................................................................................................................................................................................................... 17 2 14 0.07 1 0 1 0 0 0

Generated: 04/23/2015 at 03:58 AM