ID:

dsi_19624

 Coordinate:

3r:4362243-4362392 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.1 -26.1 -25.9

Flybase annnotation

exon [3r_4361894_4362242_-]; CDS [3r_4361894_4362242_-]; intron [3r_4362243_4362904_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTGTGTTCTTTTAGTAGAGTTAAAAGCCTATCCATAAGTCATATTTAGGTTAGTTAGGTCTGAATATTGAATCCAAATGCTTGTATGTATATCAATTTTCAAAGCGAATGCGCCGCAAGCATTTCTTGGCGAAATTGCCAATTACTGTCACTATTCTAATGCAGTCCTTTGTTTCGTCCTTCCTGTCCATCCAACGCAGGTCGATGGCAAAACAATTAAAGCGCAAATCTGGGATACGGCCGGCCAGGA
**************************************************......(((.(((......((((..((((((((((.(((((.((............)))))))..)))))))))).((((((....))))))...........)))).....))).)))..............((((.........))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M024
male body
..................................................................................................................................................................................CCTTCCTGTCCATCCAACG..................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0
...............................................................................................................................................................................................................................GCAAATCTGGGATACGGC......... 18 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................GCAAAACAATTAAAGCGCAAAT..................... 22 0 1 1.00 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................AATCTGGGATACGGCCGGCC.... 20 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TAAACTGCAAATCTGGGATACTGC......... 24 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TTAAACTGCAAATCTGGGATACTGC......... 25 3 1 1.00 1 0 0 0 1 0 0 0
...........................................ATTTAGGTTAGTTAGGTCT............................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TTAAACTGCAAATCTGGGATACT........... 23 3 1 1.00 1 0 0 1 0 0 0 0
...................................................TAGTTTGGTCTTAATATTGA................................................................................................................................................................................... 20 2 3 0.33 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................GCATGTCGTTGGCAAAACA................................... 19 2 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................................................................................TAGTGCAGTCCTTGGTTT........................................................................... 18 2 4 0.25 1 0 0 0 0 0 1 0
........ATTTTACTAGAGTTAGAAGC.............................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................TGGGATTCAGCCGGCC.... 16 2 20 0.10 2 0 0 0 0 0 2 0

Anti-sense strand reads

TAACACAAGAAAATCATCTCAATTTTCGGATAGGTATTCAGTATAAATCCAATCAATCCAGACTTATAACTTAGGTTTACGAACATACATATAGTTAAAAGTTTCGCTTACGCGGCGTTCGTAAAGAACCGCTTTAACGGTTAATGACAGTGATAAGATTACGTCAGGAAACAAAGCAGGAAGGACAGGTAGGTTGCGTCCAGCTACCGTTTTGTTAATTTCGCGTTTAGACCCTATGCCGGCCGGTCCT
**************************************************......(((.(((......((((..((((((((((.(((((.((............)))))))..)))))))))).((((((....))))))...........)))).....))).)))..............((((.........))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...........................GGATAGGTGTTCAGTA............................................................................................................................................................................................................... 16 1 1 11.00 11 6 4 1 0 0
..........................GGGATAGGTGTTCAGTA............................................................................................................................................................................................................... 17 2 7 1.71 12 5 3 2 1 1
............................GATAGGTGTTCAGTA............................................................................................................................................................................................................... 15 1 7 1.14 8 3 1 4 0 0
...................................................................AACTCAGGTTTAGGAACATACT................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0
...........................GGATAGGTGTTCAGTAG.............................................................................................................................................................................................................. 17 2 9 0.89 8 1 1 2 1 3
...........................GGATAGGTGTTCAGT................................................................................................................................................................................................................ 15 1 6 0.50 3 1 0 2 0 0
...........................GGATAGGTTTTCAGTA............................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 1 0 0
.............................................................................................................................................................................................TAGGTTGCGCCCGGCTA............................................ 17 2 6 0.17 1 1 0 0 0 0
.............................................................................................................................................................................................TTGGTTGCGACCAGCAACCG......................................... 20 3 8 0.13 1 0 0 0 1 0
..........................GGGATCGGTATTCAGTA............................................................................................................................................................................................................... 17 2 10 0.10 1 1 0 0 0 0
...........................................................................................................TTACGAGGCGTTCGT................................................................................................................................ 15 1 11 0.09 1 0 0 0 1 0
..............................................................................................................................................................................................AGGTTGCGTCCGGCTAG........................................... 17 2 13 0.08 1 0 1 0 0 0
...............................AGCCATCCAGTATAAATC......................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0
......AAAAAAATCATCGCAAT................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0
................................................................................................................................................................................................GTTGCGACCAGCAACCG......................................... 17 2 20 0.05 1 0 0 0 1 0
..........................GGGATAGGTTTTCAGTA............................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 03:19 AM