ID:

dsi_1962

 Coordinate:

2l:20221-20370 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-0.1 0.0 0.1

Flybase annnotation

exon [2l_20134_20220_-]; CDS [2l_20134_20220_-]; intron [2l_20221_21947_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCCGTGCTATTGGGCAACACTTATAGGTCGTATACATCATGGGGAGCGTTATATCCCGTTCGATCCGGCTCCAGGTATCATGTGCTAACTTCGGTCGTCCATAGAATCATTAGGATCGGCCACGTGAATCCGATCCCTGACCCTACCAGCTCAAACCTTTTCATAAAGAACTATATCGTATCGAATAAAACTTCATCTAGAAACAACAACAGGAACCGGGGCAGTGCCATGTACAGTAATCAGGATCGGG
***********************************************************************************************************************************************.............((((....))))...............................*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 M025
embryo
 O002
Head
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
...............................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAGA................................................. 26 0 1 58.00 58 25 25 2 4 1 1 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTCATCTA................................................... 24 0 1 45.00 45 33 4 7 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACAGTAATCAGGATC... 17 0 1 21.00 21 21 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACAGTAATCAGGATCGGG 20 0 1 16.00 16 14 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGCCA..................... 28 0 1 14.00 14 10 2 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACAGTAATCAGGATCGG. 19 0 1 12.00 12 9 0 1 0 1 1 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGC....................... 26 0 1 10.00 10 9 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAG.................................................. 25 0 1 9.00 9 0 1 5 1 0 0 0 0 0 2 0
......................................................................................................................................................................................................................................GTACAGTAATCAGGATCG.. 18 0 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTGCCA..................... 25 0 1 7.00 7 6 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................TACCAGCTCAAACCTTTTCATAAAGAAC............................................................................... 28 0 1 7.00 7 3 1 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTG........................ 25 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0
.................................................................................GTGCTAACGTCCGTCGT........................................................................................................................................................ 17 2 5 6.80 34 2 0 0 0 0 0 10 10 10 0 2
...............................................................................................................................................................................................................AACAGGAACCGGGGCAGTGCCATG................... 24 0 1 6.00 6 5 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAGAA................................................ 27 0 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGT......................... 24 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAACAGGAACCGGGGCA........................... 18 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCA........................... 22 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACAGGAACCGGGGCAGTGCCATGTA................. 26 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGCC...................... 27 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAAC........................................................... 16 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTCA....................................................... 20 0 1 4.00 4 0 0 3 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................AACAACAGGAACCGGGGCAGT......................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGC............................ 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCG................................ 17 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTG........................ 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTCATC..................................................... 22 0 1 3.00 3 1 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTCATCT.................................................... 23 0 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACAGGAACCGGGGCA........................... 16 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TCTAGAAACAACAACAGGAACCGGGGC............................ 27 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAAACAACAACAGGAACCGGGGCA........................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGAAACAACAACAGGAACCGGGG............................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGAACCGGGGCAGTGCCATGTACAG.............. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGCCAT.................... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTT......................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATAAAACTTCATCTAGA................................................. 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACAGTAATCAGGAT.... 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAAACAACAACAGGAACCGGGGCAGT......................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAACAACAACAGGAACCGGGG............................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGG............................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAGG................................................. 26 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CAGGAACCGGGGCAGTGCCA..................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGG.............................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAG.......................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACAGGAACCGGGGCAGTGCCATGTA................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................GTGCTAACGTCCGTCG......................................................................................................................................................... 16 2 12 1.83 22 1 0 0 0 0 0 6 6 3 0 6
.......................................................................................................................................................................................................GAAACAACAACAGGAACCGGG.............................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CATGTACAGTAATCAGGATCGGG 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCATAAAGAACTATATCGTATCGAA................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGG....................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................ACCAGCTCAAACCTTTTCATAAAGA................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTTACCCTACCAGCTCAAACCTTTTC........................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACAGGAACCGGGGCAGTGTT...................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACAGGAACCGGGGCAGTG........................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACCGGGGCAGTGCCATGTACAGTAA........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACAGGAACCGGGGCAGTG........................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGTC...................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TATCGTATCGAATAAAACTTCATCTA................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGC....................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTC........................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CGTATCGAATAAAACTTCATCTAGA................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAGACAACAACAGGAACCGGGGCAGT......................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGCCATG................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................CCGGGGCAGTGCCATGTACAGTAAT.......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTATCGAATAAAACT.......................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTATCGAATAAAACTTCATCTAGA................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACAGTAATCAGGATCGGA 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TACCAGCTCAAACCTTTTCATAAAGA................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTGACCCTACCAGCTCAAACCTTTTC........................................................................................ 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGGGT....................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAACAGGAACCGGGGCAGTGCCATG................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACCGGGGCAGTGCCAT.................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCATCTAGAAACAACAACAGGAACCGG............................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGTACAGTAATCAGGATCGGG 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACAGGAACCGGGGCAGTGC....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATTGAATAAAACTTCATCTAGA................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACAGTAATCGGGATCG.. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAACAACAGGAACCGGGGCAGTGCC...................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCCATGTACAGTAATCAGGAT.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGCCA..................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGA............................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTGACCCTACCAGCTCAAACCTTTTCAT...................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TATATCGTATCGAATAAAACTTCATC..................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACAGGAACCGGGGCAGT......................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................ACTATATCGTATCGAATAAAAC........................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AAACCTTTTCATAAAGAACTA............................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGAACTATATCGTATCGAATAAAACTT......................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCATAAAGAACTATATCGTATCGAATA............................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................CGTATCGAATAAAACTTCATCT.................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGAACCGGGGCAGTGCCATGTAC................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAGAAA............................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ACCGGGGCAGTGCCATGTACAGT............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAACAACAACAGGAACCGGGGCAGT......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ATATCGTATCAAATAAAACT.......................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAACAACAGGAACCGGGGCAGTGC....................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAACAGGAACCGGTGCAGTGCCATG................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAACAACAACAGGAACCGGGGCAGTGCC...................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTGACTCTACCAGCTCAAACCTTTTCA....................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTGTT...................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCATCTAGAAACAACAACAGGAACCG................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGG............................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CAACAGGAACCGGGGCAGTGCC...................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCAAACCTTTTCATAAAGAACT.............................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACAACAGGAACTGGGGCAGT......................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TCGAATAAAACTTCATCTAGAAACA............................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACAGGAACCGGGGCAGTGCCATGTAC................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGCACCGGGGCAGTGCCA..................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GTACAGTAATAAGGATCGGG 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................AACAACAGGAACCGGGGCG........................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAAACAACAACAGGAACCGGGG............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACAGGAACCGGGGCAGT......................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGT............................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTG........................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CCATGTACAGTAATCAGGATCGGG 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GTATCGAATAAAACTTCATCTAG.................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTGTA...................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTGCCATG................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATCAGGAACCGGGGCAGTGCCATG................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTACAACAGGAACCGGGGCAGTGC....................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAGTATCGAATAAAACTTCATCTA................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACGGGGGCAGTGC....................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGAACCGGGGCAGTGCCAT.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACAGGAACCGGGGCAGTGCCATGTAC................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGA....................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AACAGGAACCGGGGCAGTGCCA..................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACCGGGGCAGTGCCAT.................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGT....................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAAACAACAACAGGAACCGGGGCAG.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ATCGAATAAAACTTCATC..................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTGACCCTACCAGCTCAAACCTTT.......................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ACAACAACAGGAACCGGGGCAGTGCCA..................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGCC...................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................GTGCTAACGTCCGTC.......................................................................................................................................................... 15 2 20 0.55 11 2 0 0 0 0 0 6 2 0 0 1
.............................................................................................................................................................................................................ACAACAGGAACCGGGGCAAA......................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTTGAACCGGGGCAGTGCCA..................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTGACCCTACCAGCTC.................................................................................................. 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................GTGCTAACTTCCGTCGTG....................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..................................................................................TGCTAACGTCCGTCGT........................................................................................................................................................ 16 2 20 0.40 8 0 0 0 0 0 0 7 0 1 0 0
...................CTTATACGTCGTATA........................................................................................................................................................................................................................ 15 1 5 0.40 2 0 0 0 0 0 0 0 2 0 0 0
..................................................................................TGCTAACTTCCGTCGTG....................................................................................................................................................... 17 2 7 0.29 2 0 0 0 0 0 0 0 2 0 0 0
.........................................................GTTCGATCCGGCTCGAAG............................................................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTGACCCTACCAGCTC.................................................................................................. 17 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.CCGTGCTAGTGGGCA.......................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CGGCACGATAACCCGTTGTGAATATCCAGCATATGTAGTACCCCTCGCAATATAGGGCAAGCTAGGCCGAGGTCCATAGTACACGATTGAAGCCAGCAGGTATCTTAGTAATCCTAGCCGGTGCACTTAGGCTAGGGACTGGGATGGTCGAGTTTGGAAAAGTATTTCTTGATATAGCATAGCTTATTTTGAAGTAGATCTTTGTTGTTGTCCTTGGCCCCGTCACGGTACATGTCATTAGTCCTAGCCC
***************************************************.............((((....))))...............................*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................CGAGTTTGGAAAAGTATTTCTTGAT............................................................................. 25 0 1 18.00 18 14 3 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCCCCGTCACGGTACATGTCATTA.......... 25 0 1 11.00 11 4 0 4 0 3 0 0 0 0 0
.........................................................................................................................................................TTGGAAAAGTATTTCTTGATATAGCAT...................................................................... 27 0 1 9.00 9 1 2 1 5 0 0 0 0 0 0
........................................................................................................................................................................................................................GCCCCGTCACGGTACATGTCATTA.......... 24 0 1 9.00 9 6 0 1 0 2 0 0 0 0 0
.............................................................................................................................................................................................TGAAGTAGATCTTTGTTGTTGTCCT.................................... 25 0 1 8.00 8 7 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGCCCCGTCACGGTACATGTCATTA.......... 26 0 1 7.00 7 3 0 4 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGAAGTAGATCTTTG.............................................. 16 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AGTATTTCTTGATATAGCATAGCTT................................................................. 25 0 1 6.00 6 4 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAAGTAGATCTTTGTTG........................................... 18 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCCCGTCACGGTACATGTCATTAGT........ 25 0 1 5.00 5 0 2 0 1 0 1 1 0 0 0
.......................................................................................................................................................................................................................TGCCCCGTCACGGTACATGTCATTA.......... 25 1 1 5.00 5 3 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAAGTAGATCTTTGTTGT.......................................... 19 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGAAGTAGATCTTTGTTGTTGTCCT.................................... 26 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CCCCGTCACGGTACATGTCATTA.......... 23 0 1 5.00 5 0 0 3 0 2 0 0 0 0 0
......................................................................................................................................................................................................................TGGCCCCGTCACGGTACATGTCAT............ 24 0 1 5.00 5 0 5 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGAAAAGTATTTCTTGATATAGCAT...................................................................... 26 0 1 4.00 4 0 2 0 0 0 1 1 0 0 0
...............................................................................................................................................................AAGTATTTCTTGATATAGCATAGCTT................................................................. 26 0 1 4.00 4 2 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................GTATTTCTTGATATAGCATAGCTT................................................................. 24 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGCCCCGTCACGGTACATGTCATT........... 25 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0
....................................................................................................................................................CGAGTTTGGAAAAGTATTTCTTGATAT........................................................................... 27 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTGAAGTAGATCTTTGTTGTTGTCCT.................................... 27 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCCGTCACGGTACATGTCATTA.......... 22 0 1 3.00 3 0 0 2 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TGGCCCCGTCACGGTACATGTCATTAGT........ 28 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAAGTAGATCTTTG.............................................. 15 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCCCCGTCACGGTACATGTCATTAGT........ 27 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TTGAAGTAGATCTTTGTTGTTGTCC..................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................TGGTCGAGTTTGGAAAAGTATTTCTT................................................................................ 26 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0
.............................................................................................................................................................AAAAGTATTTCTTGATATAGCATAGCTT................................................................. 28 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GGCCCCGTCACGGTACATGTCATTAGTCCT..... 30 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAGTATTTCTTGATATAGCATAGCTT................................................................. 27 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................GTCACGGTACATGTCATTAGTCCT..... 24 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0
...........................................................................................................................................................................................TTTGAAGTAGATCTTTGTTGT.......................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTGAAGTAGATCTTTG.............................................. 17 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AGCATAGCTTATTTTGAAGTAGATCTT................................................ 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGAAGTAGATCTTTGTT............................................ 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGAAGTAGATCTTTGTTG........................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTTGAAGTAGATCTTTGTT............................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGTCCTTGGCCCCGTCACGGTACAT................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTGAAGTAGATCTTTGTTGTTGT....................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CTTGGCCCCGTCACGGTACATGTCAT............ 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CACGGTACATGTCATTAGTCCTAGCCC 27 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................................................................................TACGGTACATGTCATTAGTCCT..... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................AGCATAGCTTATTTTGAAGTAGATCTTTGT............................................. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................TTTGAAGTAGATCTTTGTTGTTGTC...................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................ACTTAGGCTAGGGACT.............................................................................................................. 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................GAAGTAGATCTTTGTTGTTGTCCT.................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTGATATAGCATAGCTT................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TCGAAGTAGATCTTTGTTGTTGTCCT.................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AACTGGGATGGTCGAGTTTGGAAAAGT....................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................TGGAAAAGTATTTCTTGATAT........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGAAAAGTATTTCTTGATATAGCATA..................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................GACTGGGATGGCAGAGCTTGG............................................................................................. 21 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................TTTTGAAGTAGATCTTTGTTG........................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................GGGATGGTCGAGTTTGGAAAAGTATTT................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTGGCCCCGTCACGGTACATG................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATAGCATAGCTTATTTTGAAGTAGATCT................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................TTTGAAGTAGATCTTTGT............................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ATGGTCGAGTTTGGAAAAGTA...................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGAAACTGGGATGGTCGAGT................................................................................................. 20 3 4 1.00 4 4 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCCGTCACGGTACATGTCATTAGTCCT..... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................AACTGGGATGGTCGAGTTTGGAA........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTGGAAAAGTATTTCTTGATAT........................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TGGGAAAAGTATTTCTTGATATAGCAT...................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATAGCATAGCTTATTTTGAAGTAGATC.................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGATATAGCATAGCTT................................................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTGGAAAAGTATTTCTTGATATAGC........................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGCCCCGTCACGGTACATGTC.............. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCCCCGTCACGGTACATGTCAT............ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................TGGAAAAGTATTTCTTGATATAGCATAG.................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................GTATTTCTTGATATAGCATAGCTTAT............................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................AGTATTTCTTGATATA.......................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AACTGGGATGGTCGAGTTTGGAAAAGTATT.................................................................................... 30 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................TCTTGATATAGCATAGCTT................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................GAGTTTGGAAAAGTATTTCTTGATAT........................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CGTCACGGTACATGTCATTAGTCCT..... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................AGATCTTTGTTGTTGTCCT.................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAAGTAGATCTTTGT............................................. 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................AGCATAGCTTATTTTGAAGTAGATCT................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................GTAGATCTTTGTTGTTGTCCT.................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGAAGTAGATCTTTGTTGTTGTCCTTGG................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGCCCCGTCACGGTACATGTC.............. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TGGGATGGTCGACTTTGGAAAAGTAT..................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................TTGAATAGATCTTTGTTGTTGTCCT.................................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGAAGTAGATCTTTGTAG........................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTGAAGTAGATCTTTGT............................................. 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GTTTGGAAAAGTATTTCTTGAT............................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CGAAACTGGGATGGTCGAGTTTGGAAA.......................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCCCCGTCACGGTACATGTCATT........... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AGCCCCGTCACGGTACATGTCATTA.......... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTTGTTGTCCTTGGCCCCGTCACGGT..................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................AGTATTTCTTGATATAGCATAGCT.................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................TGGGATGGTCGAGTTTGGAAAAGTATT.................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCTTGGCCCCGTCACGGT..................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTCCTTGGCCCCGTCACGGTA.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGGTACATGTCATTA.......... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................AATTTTGAAGTAGATCTTTGTTGTTGT....................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................CTGGGATGGTCGAGTTTGGAAAAGTATTT................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................GGATGGTCGAGTTTGGAAAAGTATTT................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTGGCCCGGTCACGGAACATGAC.............. 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................CGAAACTGGGATGGTCGAGTT................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGGTCGAGTTTGGAAAAGTATTTCT................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGAAGTAGATCTTTGTTGTTGT....................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGATGGTCGAGTTTGGAA........................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGCCCCGTCACGGTACATGTCATTAG......... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................TGGAAAAGTATTTCTTGATATAGCATAGCTT................................................................. 31 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................GGAAAAGTATTTCTTGATATAGCATAGCT.................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GGCCCCGTCACGGTACATGTCATTAGTCC...... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................TTGGCCCCGTCACGGTACATGTCATTA.......... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGGCCCCGTCACGGTACATGTCATTAGTC....... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................CGAAACTGGGATGGTCGAGTTTGGAA........................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AACTGGGATGGTCGAGTTT............................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................AGAAACTGGGATGGTCGAGT................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGAAAAGTATTTCTTGATATAGCATAGCTT................................................................. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TGAAGTAGATCTTTGTTGTT......................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CCGTCACGGTACATGTCATTAGTCCT..... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................GCCCCGTCACGGTACATG................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTATTTCTTGATATAGCATAGCT.................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................GAAACTGGGATGGTCGAGTT................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGGATGGTCGAGTTTGGAAAAGT....................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TCTTTTGAAGTAGATCTTTGTTGT.......................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................CACTGGGATGGTCGAGTTTGGAAAAGT....................................................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................CGGAGTTGGAAAAGTATTTCTTGAT............................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCTTTGTTGTTGTCCTT................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GCTTATTTTGAAGTAGAT................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ATGGTCGAGTTTGGAA........................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTGGGATGGTCGAGT................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATTTTGAAGTGGATCTT................................................ 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCACGGTACATGTCATTA.......... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGAGTTTGGAAAAGTATTTCTTGCT............................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ATTTTGAAGTAGATCTTTGTTGTTGT....................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GGTCGAGTTTGGAAAAGTATTTCT................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGTCCTTGGCCCCGTCACGGTACA.................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CCCGTCACGGTACTTGTCATTAGTCCTAG... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................TCGGATGGTGGAATTTGGA............................................................................................ 19 3 6 0.67 4 0 0 4 0 0 0 0 0 0 0
.......................................................................................................................................AAACTGGGATGGTCGAGT................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................GAAACTGGGATGGTCGAGT................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................AGGTAGGCTGAGGTCCTTAGT.......................................................................................................................................................................... 21 3 4 0.50 2 0 0 0 2 0 0 0 0 0 0
.......................................................................................TCAAGCCAGCAGGTA.................................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................TTGAAGTAGATCTTCG.............................................. 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CGAGTTCGGAAAAGTA...................................................................................... 16 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................GGTCAGGGACTGGGATG........................................................................................................ 17 2 12 0.17 2 0 0 0 0 0 0 0 0 0 2
...................................................................................................................................................................................TAGCTTATTTTGGTGTAG..................................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1
......................................................TGGCAAGCTTGCCCGAGGT................................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................GGATGGTGGAATTTGG............................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TCGGATGGTGGAATTTGG............................................................................................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................GTCGAGTTTGGAAGAATG...................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................CCAGGGATGGTCGAGT................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AGATCTTTGTTGTTTT....................................... 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AGGGTGTGGGATGGTC..................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:20171-20420 - dsi_1962 GCCGTGCTATTGGGCAACACTTATAGGTCGTATACATCATGGGGAGCGTTATATCCCGTTCGATCCGGCTCCAGGTATCATGTGCTAACTTCGGTCGTCCATAGAATCATTAGGATCGGCCACGTGAATCCGATCCCTGACCCTACCAGCT-----CAAACCTTTTCATAAAGAACTATATCGTATCGAATAAAACTTCATCTAGAAACAACAACAGGAACCGGGGCAGTGCCATGTACAGTAATCAGGATCGGG
droSec2 scaffold_14:33932-34047 - --------------------------------------------------------------------------------------------------------------------------------------CTTTGACCCTACCAGCT-----CAAACCTTTTCATAAAGAACTATATCGTATCGAATAAAACTTCATCTAGAAACAACAACAGGAACCGGGGCAGTGCCATGTACAGTAATCAGGATCGAG
dm3 chr2L:29019-29124 - --------------------------------------------------------------------------------------------------------------------------------------T---GACCCTACCAACT-----CAAACCTTTTCATAAACAACTATA-----TCG--ACAAACCTCATCTAGAAACAACAACAGGAACCGGGGCAGTGCCATGTACAGTAATCAGGATCGAG
droEre2 scaffold_4929:55188-55282 - --------------------------------------------------------------------------------------------------------------------------------------T---------------------CAAACAATTTCCTAAACAACTATA-----TCAAATAAAACTTCATCTAGAAACAGCAATAGAAACCGGGGCAGTGCCATGTACAGCAATCAGGATAGAG
droYak3 2L:23525-23638 - --------------------------------------------------------------------------------------------------------------------------------------CTTTGACCCTACCTGATCTTGTCAAACAATT--CTAAACAACTATA-----TCAAATAAAACTTAATCTAGAAACAGCAATAGAAACCGGGGCAGTGCCATGTACAGCAATCAGGATAGAG
droEug1 scf7180000409154:25608-25714 - --------------------------------------------------------------------------------------------------------------------------------------CTCTGACTTCAC---CT-----CCAAACATTTCCTAAACGAATAAA-----TAC-TTAAAATTGTATTTAGAAACAACAATAGAAACCGGGGAAGTGCCATGTACGCAAATCAGGATCGAG
droBia1 scf7180000301455:33450-33534 - --------------------------------------------------------------------------------------------------------------------------------------T-----------------------------TTGCTAAACCAATATA-----TCA--CAAAACTCTATTTAGAAACAACAATAGAAACCGGGGAAATGCGATGTACGCCAATCAGGATCGGG
droTak1 scf7180000413017:541218-541303 + --------------------------------------------------------------------------------------------------------------------------------------TT----------------------------TCCCTAAACCAATGTA-----TCA--ACAAATTCTATTTAGAAACAACAATAGAAATCGGGGAAATGCCATGTACGCCAATCAGGATAGAG
droEle1 scf7180000490216:10890-10942 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAACCACAATAGAAACCGGGGTAGTGCCATTTACGCCAATCAGGATAGAG
droRho1 scf7180000779252:101913-102025 + --------------------------------------------------------------------------------------------------------------------------------------CT--GACCCGACCTAGTGTTATCCTATAATTTCCTAAACCAATGTA-----TCAA-ACAAATTGTATTTAGAAACAGTAATAGAAACCGAGGCAGTGCCATTTACGCCAATCAGGATCGAG
droFic1 scf7180000453904:1460859-1460914 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGAAACAACAACAGAAACCGGGGTAGTGCCATTTACGCCAACCAAGACCGAG
droKik1 scf7180000302401:513234-513317 + --------------------------------------------------------------------------------------------------------------------------------------T-------------------------------CCTAAATGAATATA-----TGA-AACAAATTGTATTTAGAAACAACAATAGGAACCGGGGCAGTGCTATTTACGCCAACCAGGATCGGG
droAna3 scaffold_12916:2012642-2012697 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCAGAAACAACAATAGAAACCGCGGCAGTGCCATTTACACCAACCAGGACCGGG
droBip1 scf7180000396728:666703-666765 - ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATGTATCCAGAAACAACAATAGAAACCGGGGCAGTGCCATTTACACCAACCAGGACCGGG
dp5 4_group2:117736-117820 + --------------------------------------------------------------------------------------------------------------------------------------TT------------------------------CATAAA-AATCGCA-----TTTCATCGAATTGTACTTAGAAACCACAATAGAAACCGGGGCGGCACCATTTACGCTAATCAGGATCGGG
droPer2 scaffold_8:3776963-3777047 - --------------------------------------------------------------------------------------------------------------------------------------TT------------------------------CATAAA-AATCGCA-----TTTCATCGAATTGTACTTAGAAACCACAATAGAAACCGGGGCGGCACCATTTACGCTAATCAGGATCGGG
droWil2 scf2_1100000004851:140619-140671 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGAAATAGCAATAGAAACAGAGGTAGCTCCACATAC---AGTCAGGATCGTG
droVir3 scaffold_13246:180182-180237 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGAAACAACAATAGAAACCGTGGCAGTTCAATATTCACGAATCAGGATCGTG
droMoj3 scaffold_6500:220032-220098 + --------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------AAACAATCGCATGTAGAAACAACAATAGAAACCGCGGCAGTGCTATATACACAAATCAGGATCGCG
droGri2 scaffold_15252:17063150-17063233 - --------------------------------------------------------------------------------------------------------------------------------------A--------------------------------ATAAACTCAT---TTGTATAC--AATAATTACATTTAGAAGCAACAATAGAAACCGTGGCAGTACCATCTACACCAATCAAGATCGCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCCGTGCTATTGGGCAACACTTATAGGTCGTATACATCATGGGGAGCGTTATATCCCGTTCGATCCGGCTCCAGGTATCATGTGCTAACTTCGGTCGTCCATAGAATCATTAGGATCGGCCACGTGAATCCGATCCCTGACCCTACCAGCT-----CAAACCTTTTCATAAAGAACTATATCGTATCGAATAAAACTTCATCTAGAAACAACAACAGGAACCGGGGCAGTGCCATGTACAGTAATCAGGATCGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAGA.................................................26158.00580042521000025100000
....................................................................................................................................................................................TCGTATCGAATAAAACTTCATCTA...................................................24145.0045000471000033000000
...........................................................................................................................................................................................................................................GTACAGTAATCAGGATC...17121.0021000000000021000000
...........................................................................................................................................................................................................................................GTACAGTAATCAGGATCGGG20116.0016000020000014000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGCCA.....................28114.0014002200000010000000
...........................................................................................................................................................................................................................................GTACAGTAATCAGGATCGG.19112.001200001100009100000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGC.......................26110.001000000000009100000
....................................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAG..................................................2519.00920115000000000000
...........................................................................................................................................................................................................................................GTACAGTAATCAGGATCG..1819.00900000000009000000
.................................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTGCCA.....................2517.00700001000006000000
...............................................................................................................................................TACCAGCT-----CAAACCTTTTCATAAAGAAC...............................................................................2817.00700310000003000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTG........................2517.00700000000007000000
....................................................................................................................................................................................................................AACAGGAACCGGGGCAGTGCCATG...................2416.00600100000005000000
....................................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAGAA................................................2715.00500040000001000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGT.........................2415.00500100000004000000
..................................................................................................................................................................................................................ACAACAGGAACCGGGGCA...........................1815.00500000000005000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCA...........................2215.00500000000005000000
....................................................................................................................................................................................................................AACAGGAACCGGGGCAGTGCCATGTA.................2615.00500000000005000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGCC......................2714.00400110000002000000
....................................................................................................................................................................................TCGTATCGAATAAAAC...........................................................1614.00400000000004000000
....................................................................................................................................................................................TCGTATCGAATAAAACTTCA.......................................................2014.00400003100000000000
.................................................................................................................................................................................................................AACAACAGGAACCGGGGCAGT.........................2114.00400000000004000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGC............................2113.00300000000003000000
..............................................................................................................................................................................................................AACAACAACAGGAACCG................................1713.00300000000003000000
.................................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTG........................2213.00300000000003000000
....................................................................................................................................................................................TCGTATCGAATAAAACTTCATC.....................................................2213.00300200000001000000
....................................................................................................................................................................................TCGTATCGAATAAAACTTCATCT....................................................2313.00300002000001000000
....................................................................................................................................................................................................................AACAGGAACCGGGGCA...........................1613.00300000000003000000
........................................................................................................................................................................................................TCTAGAAACAACAACAGGAACCGGGGC............................2713.00300300000000000000
............................................................................................................................................................................................................GAAACAACAACAGGAACCGGGGCA...........................2412.00200000000002000000
..........................................................................................................................................................................................................TAGAAACAACAACAGGAACCGGGG.............................2412.00200020000000000000
.......................................................................................................................................................................................................................AGGAACCGGGGCAGTGCCATGTACAG..............2612.00200000000002000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGCCAT....................2912.00200000000002000000
....................................................................................................................................................................................TCGTATCGAATAAAACTT.........................................................1812.00200001000001000000
.............................................................................................................................................................................................ATAAAACTTCATCTAGA.................................................1712.00200000000002000000
...........................................................................................................................................................................................................................................GTACAGTAATCAGGAT....1612.00200000000002000000
............................................................................................................................................................................................................GAAACAACAACAGGAACCGGGGCAGT.........................2612.00200000000002000000
.............................................................................................................................................................................................................AAACAACAACAGGAACCGGGG.............................2112.00200000000002000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGG.............................2012.00200000000002000000
....................................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAGG.................................................2612.00200200000000000000
......................................................................................................................................................................................................................CAGGAACCGGGGCAGTGCCA.....................2012.00200000000002000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGG..............................1912.00200000000002000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAG..........................2312.00200000000002000000
.....................................................................................................................................................................................................................ACAGGAACCGGGGCAGTGCCATGTA.................2512.00200000000002000000
............................................................................................................................................................................................................GAAACAACAACAGGAACCGGG..............................2111.00100000000001000000
........................................................................................................................................................................................................................................CATGTACAGTAATCAGGATCGGG2311.00100000000001000000
.....................................................................................................................................................................TCATAAAGAACTATATCGTATCGAA.................................................................2511.00100010000000000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGG.......................2611.00100000000001000000
................................................................................................................................................ACCAGCT-----CAAACCTTTTCATAAAGA.................................................................................2511.00100000000001000000
....................................................................................................................................................................................................................AACAGGAACCGGGGCAGTGTT......................2111.00100000000001000000
....................................................................................................................................................................................................................AACAGGAACCGGGGCAGTG........................1911.00100000000001000000
...........................................................................................................................................................................................................................ACCGGGGCAGTGCCATGTACAGTAA...........2511.00100000000001000000
.....................................................................................................................................................................................................................ACAGGAACCGGGGCAGTG........................1811.00100000000001000000
..................................................................................................................................................................................TATCGTATCGAATAAAACTTCATCTA...................................................2611.00100000000001000000
..................................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGC.......................2211.00100000000001000000
....................................................................................................................................................................................TCGTATCGAATAAAACTTC........................................................1911.00100000000001000000
.....................................................................................................................................................................................CGTATCGAATAAAACTTCATCTAGA.................................................2511.00100010000000000000
..................................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGCCATG...................2611.00100000000000100000
............................................................................................................................................................................................................................CCGGGGCAGTGCCATGTACAGTAAT..........2511.00100000000001000000
......................................................................................................................................................................................GTATCGAATAAAACT..........................................................1511.00100000000001000000
......................................................................................................................................................................................GTATCGAATAAAACTTCATCTAGA.................................................2411.00100010000000000000
...........................................................................................................................................................................................................................................GTACAGTAATCAGGATCGGA2011.00100000000001000000
...............................................................................................................................................TACCAGCT-----CAAACCTTTTCATAAAGA.................................................................................2611.00100010000000000000
...................................................................................................................................................................................................................CAACAGGAACCGGGGCAGTGCCATG...................2511.00100000000001000000
...........................................................................................................................................................................................................................ACCGGGGCAGTGCCAT....................1611.00100000000001000000
.....................................................................................................................................................................................................TCATCTAGAAACAACAACAGGAACCGG...............................2711.00100000000001000000
..........................................................................................................................................................................................................................................TGTACAGTAATCAGGATCGGG2111.00100000000001000000
.....................................................................................................................................................................................................................ACAGGAACCGGGGCAGTGC.......................1911.00100000000001000000
................................................................................................................................................................................................................CAACAACAGGAACCGGGGCAGTGCC......................2511.00100100000000000000
......................................................................................................................................................................................................................................GCCATGTACAGTAATCAGGAT....2111.00100000000001000000
..................................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGCCA.....................2411.00100000000001000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGA............................2111.00100000000001000000
................................................................................................................................................................................TATATCGTATCGAATAAAACTTCATC.....................................................2611.00100010000000000000
....................................................................................................................................................................................................................AACAGGAACCGGGGCAGT.........................1811.00100000000001000000
..............................................................................................................................................................................ACTATATCGTATCGAATAAAAC...........................................................2211.00100000000001000000
.............................................................................................................................................................AAACCTTTTCATAAAGAACTA.............................................................................2111.00100001000000000000
...........................................................................................................................................................................AGAACTATATCGTATCGAATAAAACTT.........................................................2711.00100000000001000000
.....................................................................................................................................................................TCATAAAGAACTATATCGTATCGAATA...............................................................2711.00100100000000000000
.....................................................................................................................................................................................CGTATCGAATAAAACTTCATCT....................................................2211.00100010000000000000
.......................................................................................................................................................................................................................AGGAACCGGGGCAGTGCCATGTAC................2411.00100000000001000000
....................................................................................................................................................................................TCGTATCGAATAAAACTTCATCTAGAAA...............................................2811.00100000000001000000
...........................................................................................................................................................................................................................ACCGGGGCAGTGCCATGTACAGT.............2311.00100000000001000000
.............................................................................................................................................................................................................AAACAACAACAGGAACCGGGGCAGT.........................2511.00100000000001000000
................................................................................................................................................................................................................CAACAACAGGAACCGGGGCAGTGC.......................2411.00100000000001000000
.............................................................................................................................................................................................................AAACAACAACAGGAACCGGGGCAGTGCC......................2811.00100000000001000000
.................................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTGTT......................2411.00100010000000000000
.....................................................................................................................................................................................................TCATCTAGAAACAACAACAGGAACCG................................2611.00100000100000000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGG...............................1811.00100000000001000000
...................................................................................................................................................................................................................CAACAGGAACCGGGGCAGTGCC......................2211.00100000000001000000
......................................................................................................................................................T-----CAAACCTTTTCATAAAGAACT..............................................................................2211.00100000000001000000
.........................................................................................................................................................................................TCGAATAAAACTTCATCTAGAAACA.............................................2511.00100001000000000000
....................................................................................................................................................................................................................AACAGGAACCGGGGCAGTGCCATGTAC................2711.00100000000001000000
.................................................................................................................................................................................................................AACAACAGGAACCGGGGCG...........................1911.00100000000001000000
............................................................................................................................................................................................................GAAACAACAACAGGAACCGGGG.............................2211.00100000000001000000
.....................................................................................................................................................................................................................ACAGGAACCGGGGCAGT.........................1711.00100000000001000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGT.............................2011.00100000000001000000
..................................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTG........................2111.00100000000001000000
.......................................................................................................................................................................................................................................CCATGTACAGTAATCAGGATCGGG2411.00100000000001000000
......................................................................................................................................................................................GTATCGAATAAAACTTCATCTAG..................................................2311.00100000000001000000
.................................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTGTA......................2411.00100000000001000000
.................................................................................................................................................................................................................AACAACAGGAACCGGGGCAGTGCCATG...................2711.00100000000001000000
.......................................................................................................................................................................................................................AGGAACCGGGGCAGTGCCAT....................2011.00100000000001000000
.....................................................................................................................................................................................................................ACAGGAACCGGGGCAGTGCCATGTAC................2611.00100000000001000000
..................................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGA.......................2211.00100000000001000000
....................................................................................................................................................................................................................AACAGGAACCGGGGCAGTGCCA.....................2211.00100000000001000000
..........................................................................................................................................................................................................................AACCGGGGCAGTGCCAT....................1711.00100000000001000000
..............................................................................................................................................................................................................AACAACAACAGGAACCGGGGCAGTGT.......................2611.00100010000000000000
............................................................................................................................................................................................................GAAACAACAACAGGAACCGGGGCAG..........................2511.00100000000001000000
........................................................................................................................................................................................ATCGAATAAAACTTCATC.....................................................1811.00100000000001000000
...............................................................................................................................................................................................................ACAACAACAGGAACCGGGGCAGTGCCA.....................2711.00100000000001000000
..................................................................................................................................................................................................................ACAACAGGAACCGGGGCAGTGCC......................2311.00100010000000000000
..................................................................................................................................................................................................................ACAACAGGAACCGGGGCAAA.........................2020.50100000000001000000
droSec2
--------------------------------------------------------------------------------------------------------------------------------------CTTTGACCCTACCAGCT-----CAAACCTTTTCATAAAGAACTATATCGTATCGAATAAAACTTCATCTAGAAACAACAACAGGAACCGGGGCAGTGCCATGTACAGTAATCAGGATCGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
--------------------------------------------------------------------------------------------------------------------------------------T---GACCCTACCAACT-----CAAACCTTTTCATAAACAACTATA-----TCG--ACAAACCTCATCTAGAAACAACAACAGGAACCGGGGCAGTGCCATGTACAGTAATCAGGATCGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................GTACAGTAATCAGGATCGAG2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................AAACAACAACAGGAACCGGGG.............................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ACAGGAACCGGGGCAGTGCCATGTAC................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAACAGGAACCGGGGCAGTG........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................TAGAAACAACAACAGGAACCG................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
--------------------------------------------------------------------------------------------------------------------------------------T---------------------CAAACAATTTCCTAAACAACTATA-----TCAAATAAAACTTCATCTAGAAACAGCAATAGAAACCGGGGCAGTGCCATGTACAGCAATCAGGATAGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................TAGAAACCGGGGCAGTGCCAT....................2111.0010000100
droYak3
--------------------------------------------------------------------------------------------------------------------------------------CTTTGACCCTACCTGATCTTGTCAAACAATT--CTAAACAACTATA-----TCAAATAAAACTTAATCTAGAAACAGCAATAGAAACCGGGGCAGTGCCATGTACAGCAATCAGGATAGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
--------------------------------------------------------------------------------------------------------------------------------------CTCTGACTTCAC---CT-----CCAAACATTTCCTAAACGAATAAA-----TAC-TTAAAATTGTATTTAGAAACAACAATAGAAACCGGGGAAGTGCCATGTACGCAAATCAGGATCGAGSizeHit CountTotal NormTotal
No Reads
droBia1
--------------------------------------------------------------------------------------------------------------------------------------T-----------------------------TTGCTAAACCAATATA-----TCA--CAAAACTCTATTTAGAAACAACAATAGAAACCGGGGAAATGCGATGTACGCCAATCAGGATCGGGSizeHit CountTotal NormTotal
No Reads
droTak1
--------------------------------------------------------------------------------------------------------------------------------------TT----------------------------TCCCTAAACCAATGTA-----TCA--ACAAATTCTATTTAGAAACAACAATAGAAATCGGGGAAATGCCATGTACGCCAATCAGGATAGAGSizeHit CountTotal NormTotal
No Reads
droEle1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAACCACAATAGAAACCGGGGTAGTGCCATTTACGCCAATCAGGATAGAGSizeHit CountTotal NormTotal
No Reads
droRho1
--------------------------------------------------------------------------------------------------------------------------------------CT--GACCCGACCTAGTGTTATCCTATAATTTCCTAAACCAATGTA-----TCAA-ACAAATTGTATTTAGAAACAGTAATAGAAACCGAGGCAGTGCCATTTACGCCAATCAGGATCGAGSizeHit CountTotal NormTotal
No Reads
droFic1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGAAACAACAACAGAAACCGGGGTAGTGCCATTTACGCCAACCAAGACCGAGSizeHit CountTotal NormTotal
No Reads
droKik1
--------------------------------------------------------------------------------------------------------------------------------------T-------------------------------CCTAAATGAATATA-----TGA-AACAAATTGTATTTAGAAACAACAATAGGAACCGGGGCAGTGCTATTTACGCCAACCAGGATCGGGSizeHit CountTotal NormTotal
No Reads
droAna3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCCAGAAACAACAATAGAAACCGCGGCAGTGCCATTTACACCAACCAGGACCGGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATGTATCCAGAAACAACAATAGAAACCGGGGCAGTGCCATTTACACCAACCAGGACCGGGSizeHit CountTotal NormTotal
No Reads
dp5
--------------------------------------------------------------------------------------------------------------------------------------TT------------------------------CATAAA-AATCGCA-----TTTCATCGAATTGTACTTAGAAACCACAATAGAAACCGGGGCGGCACCATTTACGCTAATCAGGATCGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
--------------------------------------------------------------------------------------------------------------------------------------TT------------------------------CATAAA-AATCGCA-----TTTCATCGAATTGTACTTAGAAACCACAATAGAAACCGGGGCGGCACCATTTACGCTAATCAGGATCGGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCAGAAATAGCAATAGAAACAGAGGTAGCTCCACATAC---AGTCAGGATCGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................................................................................................................................................CTCCACATAC---AGTCAGGATCGTG2311.00110000
droVir3
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAGAAACAACAATAGAAACCGTGGCAGTTCAATATTCACGAATCAGGATCGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................AATAGAAACCGTGGCAGTTC.......................2011.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------AAACAATCGCATGTAGAAACAACAATAGAAACCGCGGCAGTGCTATATACACAAATCAGGATCGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
--------------------------------------------------------------------------------------------------------------------------------------A--------------------------------ATAAACTCAT---TTGTATAC--AATAATTACATTTAGAAGCAACAATAGAAACCGTGGCAGTACCATCTACACCAATCAAGATCGCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:21 PM