ID:

dsi_19596

 Coordinate:

3l:11369307-11369421 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.7 -16.5 -16.5

Flybase annnotation

exon [3l_11369189_11369306_-]; CDS [3l_11369189_11369306_-]; CDS [3l_11369422_11369595_-]; exon [3l_11369422_11369595_-]; intron [3l_11369307_11369421_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------##################################################
TGGGCGCGGTGGCCCAGCTCCTGCCCTCCCTCTACGAGTTCTCGCTGCAGGCAAGTCCAGATTGATGAGGATCTGCCGCAGCTCCTACAGCTGCTCCTCCTCCACCTTCACCCTCATGCCGCACCCCGTATCGAATTAATTGAATCTCCTTCCGCCCCTCAACAGGCTTACCACGTCACGGATGCGGCACTCGGCTACTTCTCGCCCAAACAGAG
**************************************************(((((...(((((((.(((((......((((((.....))))))))))).))...........((((((........)))).))........))))).)))..))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.............................................TGCAGGCAAGTCCAGATTGATGAGGA................................................................................................................................................ 26 0 1 3.00 3 3 0 0
...............................................................................................................................................................CAACAGGCTTACCACGTCACGGATA............................... 25 1 1 1.00 1 1 0 0
..........................................................................................................................ACCCCGTATCGAATTAATTGAATCTCC.................................................................. 27 0 1 1.00 1 0 1 0
.......................................................................................................................................................CCGCACCTCAGCAGGCT............................................... 17 2 10 0.10 1 0 0 1
...................................................................................................................................................................................................TCCTTCTCGCCCAATCA... 17 2 14 0.07 1 0 0 1
...............................CTACGAGTTGTCGCTA........................................................................................................................................................................ 16 2 14 0.07 1 0 1 0

Anti-sense strand reads

ACCCGCGCCACCGGGTCGAGGACGGGAGGGAGATGCTCAAGAGCGACGTCCGTTCAGGTCTAACTACTCCTAGACGGCGTCGAGGATGTCGACGAGGAGGAGGTGGAAGTGGGAGTACGGCGTGGGGCATAGCTTAATTAACTTAGAGGAAGGCGGGGAGTTGTCCGAATGGTGCAGTGCCTACGCCGTGAGCCGATGAAGAGCGGGTTTGTCTC
**************************************************(((((...(((((((.(((((......((((((.....))))))))))).))...........((((((........)))).))........))))).)))..))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................GGGGAGTTGTCCGAATGGTGCAGT..................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................TATGTCGACGAAGAGGAGGT............................................................................................................... 20 2 2 1.00 2 0 2 0 0 0 0 0
.............................................................................................................................................................................................GAGCCGATGAAGAGCGGGTTTGTC.. 24 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................TGGCTGGGAGTTGTCC................................................. 16 2 16 0.38 6 5 0 0 1 0 0 0
......................................................................................TGTCGACGAAGAGGAGGTAG............................................................................................................. 20 2 3 0.33 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................CGATGATGACCGGGTTTG.... 18 2 3 0.33 1 0 0 0 0 1 0 0
..........................................GCGACGTCTGCTCAGGCCTA......................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0
......................................................................................................................................................TGGCTGGGAGTTGTCCGCA.............................................. 19 3 5 0.20 1 0 0 0 1 0 0 0
...................................................................................................GAGTTGGAAGTGGGA..................................................................................................... 15 1 8 0.13 1 0 0 0 1 0 0 0
...........................................................................................ACGAGGAGGAGGTGG............................................................................................................. 15 0 9 0.11 1 1 0 0 0 0 0 0
......................................................................................TGTCGACGAAGAGGAGGTA.............................................................................................................. 19 2 10 0.10 1 0 1 0 0 0 0 0
.......................GGGATGCAGATGATCAAG.............................................................................................................................................................................. 18 3 16 0.06 1 0 0 0 0 0 0 1
.......................................................................................GTCGACGAAGAGGAGGTAG............................................................................................................. 19 2 20 0.05 1 0 1 0 0 0 0 0
....................................................................CCTAGAAGGCGTCGA.................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1
..............................................................................................AGGAGGAAGTGGAAATGG....................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0

Generated: 04/24/2015 at 02:22 AM