ID:

dsi_19594

Coordinate:

2r:5575519-5575668 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5575669_5575806_+]; exon [2r_5575669_5575806_+]; intron [2r_5575077_5575668_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TAAACGGACTTACTTCTATGAAAAATGAAGCTTATTTTCTGTGACACTAAAGTTAATTAATTTAATTTTTAATTGTGCTAACTTCATGATTAATCTTTACAAATTAATTCAACAGCTAACTCGAAATCGTTCAAGTAATTCTGTTTAACTAAAACTCTTGTGTATGGAAAGCAAACTTACCACTGAAATCTCATTGGCAGGAACGCGAGCGGTACCGCGATCCGGTGCGGGAGTGCCTAAAGGGTCTGCT ************************************************.((((((((((((.....(((((((((.......))))))))).......))))))))).))).(((((...((.....((((.((((...(((((..(((..((....))...))).)))))...))))...))))...)).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries	M025 embryo	M024 male body	SRR553485 Chicharo_3 day-old ovaries
..................................................................................................................................................................................................................GGGACCGGGGTCCGGTGCGG....................	20	3	5	2.40	12	6	6	0	0	0	0	0
..........TACTTCTATTAAAAATGATGCTT.........................................................................................................................................................................................................................	23	2	1	1.00	1	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GAGCGGTACCGCGATCCGGTG.......................	21	0	1	1.00	1	0	0	1	0	0	0	0
..........................................................................................................................................TACTGTTTAACTAAAAC...............................................................................................	17	1	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................CGGGACCGGGGTCCGGTGCGG....................	21	3	3	0.67	2	2	0	0	0	0	0	0
...................................................................................................................................................................................................................GGACCGGGGTCCGGTGCGG....................	19	3	14	0.64	9	8	1	0	0	0	0	0
......................................................................................................................................................................................................................................GAGTGGCTAAAGGGTCT...	17	1	2	0.50	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................ATACGAACGCGAGCGGTACC..................................	20	3	3	0.33	1	0	0	0	0	1	0	0
...................................................................................................................................CAAGTAATTCGGTATAAC.....................................................................................................	18	2	6	0.17	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................GACCGGGGTCCGGTGCGG....................	18	3	20	0.15	3	2	1	0	0	0	0	0
....................................................................................................................................................................TGGAAAGCAGACGTACTACT..................................................................	20	3	10	0.10	1	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................ACCGGGGTCCGGTGCG.....................	16	2	11	0.09	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................GGGACCGGGGTCCGGTGCG.....................	19	3	14	0.07	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................GTGCGGGTGTGCCTAGA.........	17	2	17	0.06	1	1	0	0	0	0	0	0
.......................................................................................................................................TAAGTCTGTTCGACTAAAA................................................................................................	19	3	18	0.06	1	0	0	0	1	0	0	0
.....................................TCTGTGACCCTAAAGA.....................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................GGTGCGGGAGTGGCGAA..........	17	2	20	0.05	1	0	0	0	1	0	0	0
...............................................................................................................................CGTTCTAGTGATTCTGTTC........................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0

Anti-sense strand reads

ATTTGCCTGAATGAAGATACTTTTTACTTCGAATAAAAGACACTGTGATTTCAATTAATTAAATTAAAAATTAACACGATTGAAGTACTAATTAGAAATGTTTAATTAAGTTGTCGATTGAGCTTTAGCAAGTTCATTAAGACAAATTGATTTTGAGAACACATACCTTTCGTTTGAATGGTGACTTTAGAGTAACCGTCCTTGCGCTCGCCATGGCGCTAGGCCACGCCCTCACGGATTTCCCAGACGA ************************************************.((((((((((((.....(((((((((.......))))))))).......))))))))).))).(((((...((.....((((.((((...(((((..(((..((....))...))).)))))...))))...))))...)).)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
.............................................................................................................................................................................................................GCTCGGGATGGCGCTA.............................	16	2	19	0.05	1	1	0
.................................................................................................................................................................................................................................ACGCCCTCCTGGATTCCCC......	19	3	20	0.05	1	0	1

Generated: 04/23/2015 at 05:13 PM