ID:

dsi_19570

 Coordinate:

node_37391:205-354 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.0 -27.9 -27.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+
mature
star
  1. x:17985993-17986017 +
  2. dsi_19570  node_37391:227-251 +
  3. node_14232:45-69 -
  4. node_50344:181-205 +

Sense Strand Reads

CTTCACCGCCACCAAAGCGCATGCGAGTCGACGATCCGGCCCGCGGAGAGGTGGCTCGGCTGTTCGTCGAGTTGGAGGTACAACAGGCAGAGCTGGAATTGAGCGCTAGTGGCTGCGACTCAGGGAATCTTGGTGGCGCTGGCGGCAACAATTCCAATAAGACCCAAATGGAGTCCCAAGAGAAAGAGCAGGATCAGGAAAAGGAGGAGGAGGAAGAAAAAGAGCAGAAGGAGGACGAGATGGAGGAGGA
************************************************************************.............((......((((((((..(((((((....((.((.((((....)))))).)))))))))....))))))))......))........****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M024
male body		 O002
Head
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
...............................................................................................................................................GGCAACAATTCCAATAAGACCCAAATGGA.............................................................................. 29 0 1 9.00 9 2 7 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGGAGTCCCAAGAGAAAGAGCAGGA......................................................... 25 0 3 6.33 19 13 5 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................TGGAGTCCCAAGAGAAAGAGCAGGAT........................................................ 26 0 3 3.67 11 9 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................GTCCCAAGAGAAAGAGCAGGATCAGGA................................................... 27 0 3 2.67 8 6 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AGTCCCAAGAGAAAGAGCAGGATCAGGA................................................... 28 0 3 2.00 6 4 2 0 0 0 0 0 0 0 0 0
........................................................................TGGAGGTACAACAGGCAGAGCTGGA......................................................................................................................................................... 25 0 4 1.75 7 5 2 0 0 0 0 0 0 0 0 0
..........ACCAAAGCGCATGCGAGTCGACGA........................................................................................................................................................................................................................ 24 0 4 1.50 6 4 2 0 0 0 0 0 0 0 0 0
....ACCGCCACCAAAGCGCATGCGAGTCGACGA........................................................................................................................................................................................................................ 30 0 4 1.25 5 3 2 0 0 0 0 0 0 0 0 0
...............AGCGCATGCGAGTCGACGATCCGGC.................................................................................................................................................................................................................. 25 0 4 1.25 5 2 2 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................AATGGAGTCCCAAGAGAAAGA............................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTCCAATAAGACCCAAATGGAGTCCCAAGA..................................................................... 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AAGAGCAGGATCAGGAAAAGGAGG........................................... 24 0 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GACAACAATTCCAATAAGACCCAAATGGA.............................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AATGGAGTCCCAAGAGAA.................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................CGGCAACAATTCCAATAAGACCCAAATGGA.............................................................................. 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AATGGAGTCCCAAGAGAAAGAGCAGGA......................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GTCAACAATTCCAATAAGACCCAAATGGA.............................................................................. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AAGAGCAGAAGGAGGACGAGATGGA...... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................ATGGAGTCCCAAGAGA................................................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............AGCGCATGCGAGTCGACGATCCGGCC................................................................................................................................................................................................................. 26 0 4 1.00 4 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAGACCCAAATGGAGTCCCAAGAGA................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGAAGGAGGACGAGATGGAGGA... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................TGCGACTCAGGGAATCTTGGTGGCGC............................................................................................................... 26 0 12 0.83 10 10 0 0 0 0 0 0 0 0 0 0
...............AGCGCATGCGAGTCGACGATCCGG................................................................................................................................................................................................................... 24 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TGCGACTCAGGGAATCTTGGTGGCG................................................................................................................ 25 0 12 0.75 9 8 1 0 0 0 0 0 0 0 0 0
............CAAAGCGCATGCGAGTCGACGATCCGGC.................................................................................................................................................................................................................. 28 0 4 0.75 3 1 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCCCAAGAGAAAGAGCAGGATCAGGA................................................... 26 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GTCCCAAGAGAAAGAGCAGGATCAGGAA.................................................. 28 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCCCAAGAGAAAGAGCAGGATCAGGAA.................................................. 27 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGCTGCGACTCAGGGAATCTTGGTG................................................................................................................... 26 0 9 0.67 6 5 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GTCCCAAGAGAAAGAGCAGGATCAGG.................................................... 26 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGGAGTCCCAAGAGAAAGAGCAGGATC....................................................... 27 0 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGCAGAAGGAGGACGTGTTT........ 21 3 8 0.63 5 0 0 5 0 0 0 0 0 0 0 0
.............................................................................................................TGGCTGCGACTCAGGGAATCTTGG..................................................................................................................... 24 0 9 0.56 5 2 3 0 0 0 0 0 0 0 0 0
........................................................................TGGAGGTACAACAGGCAGAGCTGGAAT....................................................................................................................................................... 27 0 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0
.........................AGTCGACGATCCGGCCCGCGG............................................................................................................................................................................................................ 21 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
......CGCCACCAAAGCGCATGCGAGTCGACGA........................................................................................................................................................................................................................ 28 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
.................................................GGTGGCTCGGCTGTTCGTCGAGTTGGA.............................................................................................................................................................................. 27 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGGAGGAAGAAAAAGAGCAGAAGGA.................. 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................TGGAATTGAGCGCTAGTGGCTGCGAC................................................................................................................................... 26 0 7 0.43 3 2 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGGAATTGAGCGCTAGTGGCTGCGACT.................................................................................................................................. 27 0 7 0.43 3 1 2 0 0 0 0 0 0 0 0 0
..................................................................................................TTGAGCGCTAGTGGCTGCGACTCAGGGA............................................................................................................................ 28 0 7 0.43 3 0 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGCAGGAGGAGGAAGAAATA............................. 20 2 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TCCCAAGAGAAAGAGCAGGATTAGGAA.................................................. 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GAGGAGGAAGAAAAAGAGCAG....................... 21 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................AAGAGCAGGATCAGGAAAAGGAGGA.......................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AAGAGAAAGAGCAGGATCAGG.................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CCAAGAGAAAGAGCAGGATCAGGAAA................................................. 26 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TGGAGTCCCAAGAGAAAGAGCAGGATCAG..................................................... 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GAGAAAGAGCAGGATCAGGAAAAGGA............................................. 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TGGTGGCGCTGGCGGCAACAA................................................................................................... 21 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGGATCAGGAAAAGGAGGAG......................................... 20 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GAGAAAGAGCAGGATCAGGAA.................................................. 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GAGAAAGAGCAGGATCAGGAAAAGGAGG........................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCAGGAAAAGGAGGAGGAGGAAGAA................................ 25 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................AAAGAGCAGGATCAGGAAAAGGAGGAC......................................... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGCTGGAATTGAGCGCTAGTGGCTGC...................................................................................................................................... 26 0 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0
............CAAAGCGCATGCGAGTCGACGATCCGG................................................................................................................................................................................................................... 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAGTGGCTGCGACTCAGGGAATCTT....................................................................................................................... 25 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0
CTTCACCGCCACCAAAGCGCATGCGAGTC............................................................................................................................................................................................................................. 29 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
...............AGCGCATGCGGGTCGACGATCCGGCC................................................................................................................................................................................................................. 26 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.....................TGCGAGTCGACGATCCGG................................................................................................................................................................................................................... 18 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.............AAAGCGCATGCGAGTCGACGATCCGG................................................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
............................................................TGTTCGTCGAGTTGGAGGTACAACAGGC.................................................................................................................................................................. 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGAGCAGGAGGAGGAAGAAAA.............................. 22 2 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0
..............AAGCGCATGCGAGTCGACGATCCGG................................................................................................................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGCAGAAGGAGGACGTGTT......... 20 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
..........ACCAAAGCGCATGCGAGTCGACGATC...................................................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
....ACCGCCACCAAAGCGCATGCGAGTCGACG......................................................................................................................................................................................................................... 29 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................GGCTGTTCGTCGAGTTGGAGT............................................................................................................................................................................ 21 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...........CCAAAGCGCATGCGAGTCGACGATCCGGC.................................................................................................................................................................................................................. 29 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
................GCGCATGCGAGTCGACGATCCGG................................................................................................................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................GCATGCGAGTCGACGATCCGG................................................................................................................................................................................................................... 21 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0
.........CACCAAAGCGCATGCGAGTCGACGA........................................................................................................................................................................................................................ 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
....................ATGCGAGTCGACGATCCGGC.................................................................................................................................................................................................................. 20 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................TGGAGGTACAACAGGCAGAG.............................................................................................................................................................. 20 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
............................................................TGTTCGTCGAGTTGGAGGTACAACA..................................................................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAGTGGCTGCGACTCAGGGAATCTTGG..................................................................................................................... 27 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................TTCGTCGAGTTGGAGGTACAACAGG................................................................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.....................TGCGAGTCGACGATCCGGCC................................................................................................................................................................................................................. 20 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.......................CGAGTCGACGATCCGGCCCGCGGA........................................................................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCAGGGAATCTTGGTGGCGCTGGC........................................................................................................... 24 0 11 0.18 2 1 1 0 0 0 0 0 0 0 0 0
...............................................................................ACAACAGGCAGAGCTGGAATT...................................................................................................................................................... 21 0 11 0.18 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGCAGGAGGAGGAAGAAAAT............................. 20 2 12 0.17 2 0 0 2 0 0 0 0 0 0 0 0
....................................................GGTTCGGCTGTTCGTCG..................................................................................................................................................................................... 17 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGCAGAAGGAGGACGTGTTA........ 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TGCGACTCAGGGAATCTTGGTGG.................................................................................................................. 23 0 12 0.17 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CGACTCAGGGAATCTTGGTG................................................................................................................... 20 0 12 0.17 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................CTGGAATTGAGCGCTAGTGGC......................................................................................................................................... 21 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGGAAGAAAAAAAGCTGAAG.................... 20 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................AGAGCTGGAATTGAGCGCTAGTGGC......................................................................................................................................... 25 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGGAATTGAGCGCTAGTGGCTGGGAC................................................................................................................................... 26 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGGAATTGAGCGCTAGTGGCTGGGGC................................................................................................................................... 26 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................TGGAATTGAGCGCTAGTGGCTGC...................................................................................................................................... 23 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................GGCCCTTCTTCGAGTTGGAGG............................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................GCTAGTGGCTGCGACTCAGGGAATCT........................................................................................................................ 26 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CTAGTGGCTGCGACTCAGGGAATCTTG...................................................................................................................... 27 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................TGAGCGCTAGTGGCTGCGACTCAGGGA............................................................................................................................ 27 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ATCGGGAAAAGGAGGATGAAGA.................................... 22 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................GCTAGTGGCTGCGACTCAGGGAATC......................................................................................................................... 25 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................CTAGTGGCTGCGACTCAGGGAATCT........................................................................................................................ 25 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................AGCGCTAGTGGCTGCGACTCAGGGAATCT........................................................................................................................ 29 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAGTGGCTGCGACTCAGCGAATCT........................................................................................................................ 24 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAGTGGCTGCGACTCAGGGAATCT........................................................................................................................ 24 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................GGCTGTTAGACGAGTTCGA.............................................................................................................................................................................. 19 3 17 0.12 2 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................TGGCTGCGACTCAGGGAATCTT....................................................................................................................... 22 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GGCTGCGACTCAGGGAATCTT....................................................................................................................... 21 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................GCAGAGCTGGAATTGAGCGCT............................................................................................................................................... 21 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................AGTGGCTGCGACTCAGGGAATCTT....................................................................................................................... 24 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................CGCGGAGAGCTGGAATTGAGCGCTA.............................................................................................................................................. 25 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................CGCGGAGAGCTGGAATTGAGCGCTAGT............................................................................................................................................ 27 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGCTGCGACTCAGGGAATTTGGT..................................................................................................................... 24 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGCTGCGACTCAGGGAATCTTGGT.................................................................................................................... 25 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGCTGCGACTCAGGGAATCTTG...................................................................................................................... 23 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................CGCGGAGAGCTGGAATTGAGCGCTAG............................................................................................................................................. 26 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGCTGCGACTCAGGGAATCTTGGTGA.................................................................................................................. 27 1 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................GGCTGCGACTCAGGGAATCTTGGTG................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TGGCTGCGACTCAGGGAATCT........................................................................................................................ 21 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGAGCAGGAGGAGGAAGAGATA........ 22 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGAGCAGGAGGAGGAAAAAAAA............................. 23 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................AGGGAATCTTGGTGGCGCTGGCGGC........................................................................................................ 25 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAACAGGCAGAGCTGGAATTGAG................................................................................................................................................... 24 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGAGCAGGAGGAGGAAGAGAT......... 21 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................GGCAGAGCTGGAATTGAG................................................................................................................................................... 18 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGGGAATCTTGGTGGCGCTGG............................................................................................................ 21 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................CTCAGGGAATCTTGGTGGCGCTGGC........................................................................................................... 25 0 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCAGGGAATCTTGGTGGCGCTG............................................................................................................. 22 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................AGGGAATCTTGGTGGCGCTTTT........................................................................................................... 22 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGAAAAGGAGGACGAGGA.................................... 18 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................CGACTCAGGGAATCTTGGTGGCGC............................................................................................................... 24 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCAGGGAATCTTGGTGGCGCTT............................................................................................................. 22 1 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................TCAGGGAATCTTCTTGGCGCT.............................................................................................................. 21 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................CTGCGACTCAGGGAATCTTGG..................................................................................................................... 21 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GAAGAGCAGGAGGAGGAAGAAA............................... 22 2 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TGCGACTCAGGGAATCTTGGTG................................................................................................................... 22 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CGACTCAGGGAATCTTGGTGGC................................................................................................................. 22 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................CTGCGACTCAGGGAATCTTGGTGGC................................................................................................................. 25 0 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGCAGAAGGAGGACGTTTT......... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
....................................................GGTTCGGCTGTTCGT....................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGGAGGAAGAAAAAGA........................... 16 1 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................TTGAGCGCTGCTGGCTGC...................................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................AGAGCCGAAGAAGGACGTGA.......... 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGAGGAGGAGAAAGAA................................ 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AAGAGCAGGAGGAGGAAGTAA............................... 21 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
...................CATGCAAGTCGACGATG...................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................CGTGATGGAGGAGGA 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AAGGATGAGGATGAAAAAAAA............................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.............................................................GTTCGTCGAGCTGGA.............................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GAAGTGGCGGTGGTTTCGCGTACGCTCAGCTGCTAGGCCGGGCGCCTCTCCACCGAGCCGACAAGCAGCTCAACCTCCATGTTGTCCGTCTCGACCTTAACTCGCGATCACCGACGCTGAGTCCCTTAGAACCACCGCGACCGCCGTTGTTAAGGTTATTCTGGGTTTACCTCAGGGTTCTCTTTCTCGTCCTAGTCCTTTTCCTCCTCCTCCTTCTTTTTCTCGTCTTCCTCCTGCTCTACCTCCTCCT
******************************************************************************.............((......((((((((..(((((((....((.((.((((....)))))).)))))))))....))))))))......))........************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR902009
testis
............................................................................................................................................CCGCCGTTGTTAAGGTTATTCTGGGT.................................................................................... 26 0 1 6.00 6 3 2 1 0 0 0 0 0 0
...............................................................................................................................................................TCTGGGTTTACCTCAGGGTTCTCTT.................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCCTCCTTCTTTTTCTCGTC....................... 20 0 3 1.00 3 0 0 0 0 3 0 0 0 0
.............................................................................................................................................CGCCGTTGTTAAGGTTATTCTGGGT.................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................GTTCTCTTTCTCGTCCTAGTC..................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................CCGCCGTCGTTAAGGTTATTCTGGGT.................................................................................... 26 1 8 0.63 5 3 2 0 0 0 0 0 0 0
.....................................................................TCAACCTCCATGTTGTCCGTCTCGAC........................................................................................................................................................... 26 0 4 0.50 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GGTTCTCTTTCTCGTCCTAGT...................................................... 21 0 3 0.33 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................AGGGTTCTCTTTCTCGTCCTAGTCCTTTT................................................ 29 0 3 0.33 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTTCTTTTCTTCCTCCTGCTGT.......... 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................AGGGTTCTCTGTCTC.............................................................. 15 1 7 0.29 2 0 0 0 2 0 0 0 0 0
...............................................................AGCAGCTCAACCTCCATGTTGTCCGTCT............................................................................................................................................................... 28 0 4 0.25 1 0 0 0 0 0 0 0 1 0
...............TCGCGTACGCTCAGCTGCTAGGCCG.................................................................................................................................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.AAGTGGCGGTGGTTTCGCGT..................................................................................................................................................................................................................................... 20 0 4 0.25 1 0 0 0 1 0 0 0 0 0
....................TACGCTCAGCTGCTAGGCCGG................................................................................................................................................................................................................. 21 0 4 0.25 1 0 0 0 0 0 0 0 0 1
.......................................................AGCCGACAAGCAGCTCAACCTCCATGT........................................................................................................................................................................ 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0
..........TGGTTTCGCGTACGCTCAGCT........................................................................................................................................................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0
........................................................GCCGACAAGCAGCTCAACCTCCATGTT....................................................................................................................................................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0
......................................................................CAACCTCCATGTTGTCCGTCTCGAC........................................................................................................................................................... 25 0 4 0.25 1 0 1 0 0 0 0 0 0 0
....TGGCGGGGGTTTCGCGTACGCTCAGCT........................................................................................................................................................................................................................... 27 1 4 0.25 1 0 1 0 0 0 0 0 0 0
....TGGCGGTGGTTTCGCGTACGCTCAG............................................................................................................................................................................................................................. 25 0 4 0.25 1 0 1 0 0 0 0 0 0 0
............................................................ACAAGCAGCTCAACCTCCATG......................................................................................................................................................................... 21 0 4 0.25 1 0 1 0 0 0 0 0 0 0
.......CGGTGGTTTCGCGTACGCTCAGCTGC......................................................................................................................................................................................................................... 26 0 4 0.25 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................CGCCGTCGTTAAGGTTATTCTGGGT.................................................................................... 25 1 8 0.25 2 1 1 0 0 0 0 0 0 0
..........................................................CGACAAGCAGCTCAACCTCCATGT........................................................................................................................................................................ 24 0 4 0.25 1 0 0 1 0 0 0 0 0 0
.........GTGGTTTCGCGTACGCTCAGC............................................................................................................................................................................................................................ 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0
.......................GCTCAGCTGCTAGGCCGGGCGCCTC.......................................................................................................................................................................................................... 25 0 4 0.25 1 0 0 0 0 0 0 1 0 0
...................GTACGCTCAGCTGCTAGGCCG.................................................................................................................................................................................................................. 21 0 4 0.25 1 0 0 0 1 0 0 0 0 0
........................................................GCCGACAAGCAGCTCAACCTC............................................................................................................................................................................. 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0
...............................................................................................................CGGCGATGAGTCCCTTAG......................................................................................................................... 18 2 11 0.18 2 0 1 0 0 0 1 0 0 0
...........................................................................................................................................................................TCAGGGTTGTCTTTCGCGT............................................................ 19 2 6 0.17 1 0 0 0 1 0 0 0 0 0
...................................................................................................................GATGAGTCCCTTAGAGCCAA................................................................................................................... 20 3 13 0.15 2 2 0 0 0 0 0 0 0 0
.....................................................................................CCGTCAAGACCTCAACTCG.................................................................................................................................................. 19 3 20 0.15 3 1 0 1 0 0 1 0 0 0
..................................................................................................AAGTCGCGATCACCGACGCTGAGT................................................................................................................................ 24 1 7 0.14 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAGGTTCTCTTTCTCGT............................................................ 17 1 7 0.14 1 0 0 0 0 0 1 0 0 0
..........................................................................................................ATCACCGACGCTGAGTCCCTT........................................................................................................................... 21 0 8 0.13 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................CGTTAAGGTTATTCTGGGTT................................................................................... 20 1 9 0.11 1 1 0 0 0 0 0 0 0 0
...............................................................................................................CGGCGATGAGTCCCTTA.......................................................................................................................... 17 2 19 0.11 2 0 0 1 0 0 1 0 0 0
......................................................................................................................................................TTAGGTTATTCTGGGCT................................................................................... 17 2 20 0.10 2 0 0 2 0 0 0 0 0 0
...................................................................TCTCAACCTCCATGTTGTCCGTCTCGAC........................................................................................................................................................... 28 1 11 0.09 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................AGTCCCTTAGAACCACCGCGACCGCC......................................................................................................... 26 0 11 0.09 1 1 0 0 0 0 0 0 0 0
....................................................................................................................ATGAGTCCCTTAGAGCCAAC.................................................................................................................. 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0
...................................................................................................................GATGAGTCCCTTAGAGCC..................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0
.................................................................................................................GCGATGAGTCCCTTAGAGCCA.................................................................................................................... 21 3 12 0.08 1 0 0 1 0 0 0 0 0 0
..................................................................................................................CGATGAGTCCCTTAGAGC...................................................................................................................... 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0
....................................................................................................................ATGAGTCCCTTAGAGCCA.................................................................................................................... 18 2 14 0.07 1 1 0 0 0 0 0 0 0 0
....................................................................................................................ATGAGTCCCTTAGAGCCAA................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0
..................................................................................................................CGATGAGTCCCTTAGGA....................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................TGATTCCCTTAGAGCCA.................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
................................................................................................................GGCGATGACTCCCTTAGA........................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0
.AAGTGGCGGTGTTTT.......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................TGACTCCCTTAGGACCA.................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0
................................................................................................................GGCGATGAGTCCCTTAG......................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0
.......................................................................................GTCTCGACCTTAGCT.................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 node_37391:155-404 + dsi_19570 CTTCACCGCCA----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACGATCCGGCCCGCGGAGAGGTGGCTCGGCTGTTCGTCGAGTTGGAGGTAC--------------------------------------------------AACAG---GCAGAGCTGGAATTG------------------------------------------AGCGCTAGTGGCTGCGACTCAGGGAATCTTGGTGGCGCTGGCGG-CAACA--------------------------------------------------------------------ATTCCAATAAGACCCAAA--------------------TGGAG----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAA-----------------------------------GGAGGAGGAGGAAGA---AAAAGAGCAGAA---------------GGAGGACGAGATGGAGGAGGA------------------
droSec2 scaffold_5599:1368-1617 - GACCAGGAGGAGGGAGAG----------------------------------CCGACAAAGAAAAAACCCGAGGAGGCCGGTTCGACGCCGTCACCAAAGCACATGGGTGCC---------GCCTAGGAATGGTCGGTTGGTCCGCTG-------------------------------------------------------------------------------------------------------------------TACAGCTACATGTT----------------------------------------------------TGGTGACACGGTTT------------------------------------------------------ACTTCATCGTCACCTGGAAGGGATCCCAGTTGGGGAAGCCGTG----------------------------C---CTGTTGAGCAG---AT----------------------------------------------------------------------------------------------------------------------------------------------------------CAAACAT-----------------------------------------------------GT----GCACGACAAGC----------------------------------------------------------------------------------TACTCAT---TGACTTCATTAC---------------GAGCTTGAAGCTACAGGACTA------------------
dm3 chrX:19084481-19084638 + CGACGCCGCCT----C-------------------------------------------------------------------------------CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTGCTCGTCGAGTTGTTGGTAC--------------------------------------------------AACAG---GCAGAACTGG------------------------------------------ATGCAACCAACGGTGGCAGCGTGTCAGGGAATCTC-----------------------------------------------GATGGCGGCA-------------------------------ATTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCCAA------------------
droEre2 scaffold_4845:9081322-9081546 + CATCATCGACA----GGTGCAGCGGCTACATCGACGTCCAGTGGT------------------------------------------------------------GG------------------------TGGCGACACC-----------------------GCTAACGATCAGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCAGCTCTGAAGAATCGAGGAGGAGAGGAAAGCGAT-----------------------------------------------------------------------GGCAGCTCCAACCAGGCGG------------------------------------------CGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAAT----------------------------------------------------------ACAGAAGAAGAAGG-----------------------CG------T---------------GG----CCAGTGAAAGCAGTG------------------
droYak3 X:14293323-14293465 + CGCTTCTGGGGACA----------------TTGTCGCCCAGCGAA------------------------------------------------------------GG------------------------------CAGC---------AGCGAG--------TG--------AGATGGTCCAAGATCAGGAGAAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---AGGAGGAGGAG---CA-------------------------------------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GGA---------------GCAGGA--------------------GGAGGAGGAGCAGGA---GGAGCAGGAGGA---------------GCAGGAGGAGGAGGAGCAGGA------------------
droEug1 scf7180000409181:63906-64075 + AGCCAGAAGAG----TG----------GTA-------------------------------------------------------------------------------------------------------GTGGCACC---------TCCGAGGATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCACC-----------TCTGCCACTATGACAAAATCATCAAAGAAGGGTAAAAGTA----------------------------------------------------------ACAAGCAAAAGACTAGC----------AGTGGGAAGA----TCAGCGAAAGAAAGCCAGAACC---------GAA----------------------GAG---CATGGAGCAGGA---------------GAAGATCGTCGTAGAGGAGGA------------------
droBia1 scf7180000302075:333597-333787 + CAGCGCTGGGA----G-------------------------------------------------------------------------------TGGGCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------ATGGG----------------------------C---GGCCT----------------------------------------------------------------------------------------------------------------------GATGACCAGCCTGGCGG------------------------------------------CGCTGCTCTGGCTGAATGCCTACGAGGCCACGGAGCCGACAGAGGTGGCCATTGGCAAGTCAAGGATTAGC----------CAGGCTATTA----TCA---A---------------------GCGGAAGGAGAAGG-T------GCAGCAGCA---GCTGGAGGAGGG---------------ACAGCAGCAGGAGGAGGAGCA------------------
droTak1 scf7180000415812:34744-34876 + GTGAGCCCGAGACACCCG----------------------------------AG------------------------------------------------GGCGA----------------------GG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACGCCA---------------------------------------------------------------AGGCC-----GATGAGGACATCG--------------------TCGAG----------------------------G---ATGATGAGGAG---GT---C----------------------GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA---------------GGAGGTCGTC--------------GA------GGAGGAGGA---TGAGGAGGCCGA---------------GGAGGATGAGGAGGAAGAGGA------------------
droEle1 scf7180000491194:1678807-1678977 + GGTGCCACAGGGCAAC-----------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------GGT----------------------------ATTGCAA------------------TGATTGCGTTAAGAGTCT---------------------------------------------------------------GGGTC-----TGAATAGT------------------------------GCTCAAAACGAC----------------A---AAGATAAGAAGCAGGCAGCG----------------------AAGAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCAAGTTTATT----------GTA------------GA---------------AGAAGA--------------------GGAGGATGAGCCCAC---AGAAGAGGAAGA---------------GGAGGAAGTGGATGAGGAGCA------------------
droRho1 scf7180000779097:44078-44218 + GCCTGTGGCCA----CC----------ACC----------------------------------------------------------------------------------------------------------------TCGGTACTCAAGAAAAAGAAGG--------------------------------------------------AGCCAACACCTCCACCCGAATCCTCCTCCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGAGGAG---AG-------------------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------GGA---------------GGAGGAGGAG--------------AC------CGAAGAAGA---GACCGAGTCCGA---------------GGAGGAGGAAAGCGAGGAGGA------------------
droFic1 scf7180000454044:681025-681265 + CTTCGGCGGCA----TCGGGAGCGGCCACATCGA---------------------------------------------------------------------------------------GCTCAAGCGGTGGCGACACC-----------------------GCCGCCGATCAGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGACGGCCCTGAAGAATCGAGGTGGCGAAGAGAGCGAT-----------------------------------------------------------------------GGGAGCTCCAATCAGGCGG------------------------------------------CGTCTCCAGTGCGTAACAGTGCCGCATCGACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAAT----------------------------------------------------------ACAGAAGAAGAAGG-----------------------CG------TGGCCAATGACAGCAGTGACAGCGAAGAAGAAGTTGA------------------
droKik1 scf7180000302469:2088886-2089055 + GGAACTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAG---GCAGAGCATCAACGGATGGTGGAGGAGCATTGAATCTAACCAGCAGCAGTAGCTC----------------------------------------------------CAATGGCATTGAGTATGAGATATTGCGGATGGAGGGC-------------------------------ATCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------------------------------------------------------------------A----GCATGGCAA-----------------------------------CGATGATGACGAGGA---GGAAGAAGATAC---------------AGAGGAGGAGGAGGAGGAAGA------------------
droAna3 scaffold_13117:3281864-3282083 + ATCCACAGGAG----GAT----------------------------------CC---------------------------------------------CCAAGAGA------------------------------AGCT---------TGGCGA--------------------------------------------------------------------------TGAACCGCCCGAGAA-----------------------------------------------------------------------------GGAGTCC----------GATTCCGAGCTGG--GTGA--------CGAGATAGAGGACTACTTGAAGGATATGCTG-----GAAGACTATTCGG--------------------ATGAC----------------------------GACCTTGAAGAGGAC---TC-------------------------------------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GGA---------------CTCG--------------------GAAGACGAGCTGGAGGAGATCGAAGAGGAGCA---------------GGAGGAAGAGGTCCCGGACAAGGACAAGCCGGGCAAGTC
droBip1 scf7180000396733:54089-54337 + CGATAGCGACA----A-------------------------------------------------------------------------------TGAGGTAAACGT----------------------TGACGATGAT-------------------------GA--------CGCCGATGGCGGAGCGAAAAAAGG-CCAGGTGAAGGAACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAACAAAGGCGGAGCTGGAAGAGAAGA---GAGAGCCGG-------------------------------AGAAAGAGACAGCTGCTGCTGGCAATGAACT---AAAGGTCATCAAGCCCGGGTCAGCCCCAAACACCGAAGCAGTAGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAC-----------------------------------GGAAGAGGGAGCCGA---AGAAGAGGAGGC---------------GGCGGAAGAAGGCACTGACGA------------------
dp5 XR_group6:11814153-11814375 + TAAAGCTGGAGCAAGAGG----------------------------------CT------------------------------------------------GACGA----------------------GGACAAGAAGCCCTCGGATGTCAAACAAGAGCAGC--------------------------------------------------CACAG---ACGGAATCTGAATCATCTGCGGAGGTGAAACCGAGT----------------------------GTGGCAG------------------CGACAGCGGCGGAGGTCA---------------------------------------------------------------AGGCC-----GAAGCACCCAAGA--------------------CCGAG----------------------------C---CTAAAGAAGAG---GC---C----------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA---------------GACGCCAGAG--------------CT------CAAGGCGGA---ACCCAAGACGGA---------------GGAGGACGACAAAGAAAAGGA------------------
droPer2 scaffold_20:1735735-1735981 + TAAAGCTGGAGCAAGAGG----------------------------------CT------------------------------------------------GACGA----------------------GGACAAGAAGCCCTCGGATGTCAAACAAGAGCAGC--------------------------------------------------CACAG---ACGGAATCTGAATCATCTGCGGAGGTGAAACCAAGT----------------------------GTGGCAG------------------CGACAGCGGCGGAGGTCA---------------------------------------------------------------AGGCC-----GAAGCACCCAAGA--------------------CCGAG----------------------------C---CTAAAGAAGAG---GC---C----------------------AAGGAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGAGCTCAAG----------GCGG-----A----ACCCAAGAC-----------------------------------GGAAGAGGACGACAA---AGAAAAGGACAA---------------GGAGAAGGAGAAGGAGAAGGA------------------
droWil2 scf2_1100000004540:193320-193423 + CAGATGCAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGAAA--------------------ATGGG----------------------------G---ACGATGAGGAG---CA---A----------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GCA---------------GGAGGACGAC--------------GAGGAGCAGATGCAAGA---AAAAGAGGACGA---------------GGAGGAGGAGAAGCAAGAGGA------------------
droVir3 scaffold_12875:19851859-19852102 + ATCCCGATCAA----A-----------------------------------------------------------------------------------TAGC----------------------------------------------------------------------------------------------------------------------------ACGCGAACGTGCCGTCAA-----------------------------------------------------------------------------AGAGTTT---------------------------------------------------------------GAGC-------------------------------------------------------------------------------------------G-------------------------------------------------------TGAGGAGGTCATCT-GCCCGTTGCAGTCGCGTCTGCCCAGGCGGTACGAGGGCAGG-----------CCGACCTATGCGATATTGGCTGTGGAGCAGAGCAGACGGGACAAGGGGCTGAGCGTGCAGGAGCACAACAACGAAGAGGCAAG--------------------------------------------------------TGA---------------AACG---------GACAAA-----TACGA---GGCGGCGGA---AGATAACGATGA---------------GGATTATGAGGAAGAGGAGGA------------------
droMoj3 scaffold_6473:1440369-1440564 + AGCCGGAGAAG----AGG----------------------------------CT---------------------------------------------GGAGAAGA------------------------------AACC---------GGAGAA--------GA--------AGAGGGAGGAAGAGCTGGAGAAGTAGCCGGAGAAGGATCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGAAGGAGAAGAAGCTGGAGTAGGAGT---CGGAGAAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGGAGAAGAGACTGGAGAA--------------------------------------------------------GAA-------------------------ACCGGAGAAGAAGA-G------GGAGGAAGA---GCTGGAGAAGGA---------------GCTGGAGAAGGAGCCGGAAAA------------------
droGri2 scaffold_15252:13137095-13137341 + CACAACAGGCGCTGG--------CGCCGCATAGTAGCGCACTGGCAGCGCCGCCCACAGCGACCACGCCCCAATCGCCCGATTCGGCGGCAACAGCAGGACAATTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAGCAGCAA------------------------------------------------------------------------------------------------------------------------CAGCAGCGATGCATCCTCAATGAAGAAGGC--------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------CAAATGA-----------------------------------------------------AT----GCGTGCCAAGCGCTGGCCAAGATTAGCAGC---AACACCAAGGA---------------GGAGGAGGAG--------------GA------GGCGGCGGA---GGCGGAGCCTGA---------------AGTGGAAACAGAAACAGAGGC------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTCACCGCCA----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACGATCCGGCCCGCGGAGAGGTGGCTCGGCTGTTCGTCGAGTTGGAGGTAC--------------------------------------------------AACAG---GCAGAGCTGGAATTG------------------------------------------AGCGCTAGTGGCTGCGACTCAGGGAATCTTGGTGGCGCTGGCGG-CAACA--------------------------------------------------------------------ATTCCAATAAGACCCAAA--------------------TGGAG----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAA-----------------------------------GGAGGAGGAGGAAGA---AAAAGAGCAGAA---------------GGAGGACGAGATGGAGGAGGA------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................GG-CAACA--------------------------------------------------------------------ATTCCAATAAGACCCAAA--------------------TGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2919.00900000070200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAG----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----................................................................................................................................2536.3319000000501301000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAG----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----T...............................................................................................................................2633.671100000000920000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGA..........................................................................................................................2732.67800000020600000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGA..........................................................................................................................2832.00600000020400000000
...........................................................................................................................................................TGGAGGTAC--------------------------------------------------AACAG---GCAGAGCTGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2541.75700000020500000000
..........A----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2441.50600000020400000000
....ACCGCCA----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3041.25500000020300000000
..................................................................................................AGCGCATGCGAGTCGACGATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2541.25500000020210000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------TGGAG----------------------------T---CCCAAGAGAAA---GA---..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATAAGACCCAAA--------------------TGGAG----------------------------T---CCCAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAA-----------------------------------GGAGG...............................................................................2431.00300000000300000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------TGGAG----------------------------T---CCCAAGAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
................................................................................................................................................................................................................................................................................................................................CGG-CAACA--------------------------------------------------------------------ATTCCAATAAGACCCAAA--------------------TGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------TGGAG----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----................................................................................................................................2711.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCAGAA---------------GGAGGACGAGATGGA........................2511.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------TGGAG----------------------------T---CCCAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
..................................................................................................AGCGCATGCGAGTCGACGATCCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2641.00400000020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAAGACCCAAA--------------------TGGAG----------------------------T---CCCAAGAGA............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA---------------GGAGGACGAGATGGAGGA.....................2211.00101000000000000000
...................................................................................................................................................................................................................................................................................................TGCGACTCAGGGAATCTTGGTGGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.8310000000001000000000
..................................................................................................AGCGCATGCGAGTCGACGATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.75300000000300000000
...................................................................................................................................................................................................................................................................................................TGCGACTCAGGGAATCTTGGTGGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.75900000010800000000
...............................................................................................CAAAGCGCATGCGAGTCGACGATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2840.75300000020100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGA..........................................................................................................................2630.67200000010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAA.........................................................................................................................2830.67200000020000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAA.........................................................................................................................2730.67200000010100000000
...............................................................................................................................................................................................................................................................................................TGGCTGCGACTCAGGGAATCTTGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.67600000010500000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGG...........................................................................................................................2630.67200000010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAG----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TC..............................................................................................................................2730.67200000000200000000
...............................................................................................................................................................................................................................................................................................TGGCTGCGACTCAGGGAATCTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.56500000030200000000
...........................................................................................................................................................TGGAGGTAC--------------------------------------------------AACAG---GCAGAGCTGGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.50200000020000000000
............................................................................................................AGTCGACGATCCGGCCCGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.50200000000200000000
......CGCCA----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2840.50200000000200000000
....................................................................................................................................GGTGGCTCGGCTGTTCGTCGAGTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAAGA---AAAAGAGCAGAA---------------GGA....................................2620.50100000000000001000
.....................................................................................................................................................................................................................................TGGAATTG------------------------------------------AGCGCTAGTGGCTGCGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.43300000010200000000
.....................................................................................................................................................................................................................................TGGAATTG------------------------------------------AGCGCTAGTGGCTGCGACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.43300000020100000000
..........................................................................................................................................................................................................................................TTG------------------------------------------AGCGCTAGTGGCTGCGACTCAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2870.43300000030000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGAAGA---AAAAGAGCAG........................................................2130.33100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAA-----------------------------------GGAGGA..............................................................................2530.33100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGG...........................................................................................................................2130.33100000000100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAA........................................................................................................................2630.33100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAG----------------------------T---CCCAAGAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAG............................................................................................................................2930.33100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAA-----------------------------------GGA.................................................................................2630.33100000000100000000
....................................................................................................................................................................................................................................................................................................................TGGTGGCGCTGGCGG-CAACA--------------------------------------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.33100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAA-----------------------------------GGAGGAG.............................................................................2030.33100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAA.........................................................................................................................2130.33100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAA-----------------------------------GGAGG...............................................................................2830.33100000000100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAAAA-----------------------------------GGAGGAGGAGGAAGA---A.................................................................2530.33100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---GA---G----------------------CA---------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAA-----------------------------------GGAGGAC.............................................................................2730.33100000000100000000
..................................................................................................................................................................................................................................AGCTGGAATTG------------------------------------------AGCGCTAGTGGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2670.29200000000200000000
...............................................................................................CAAAGCGCATGCGAGTCGACGATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.25100000000100000000
............................................................................................................................................................................................................................................................................................TAGTGGCTGCGACTCAGGGAATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.25200000020000000000
CTTCACCGCCA----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2940.25100010000000000000
........................................................................................................TGCGAGTCGACGATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.25100000000100000000
................................................................................................AAAGCGCATGCGAGTCGACGATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000000100000000
...............................................................................................................................................TGTTCGTCGAGTTGGAGGTAC--------------------------------------------------AACAG---GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2840.25100000000100000000
.................................................................................................AAGCGCATGCGAGTCGACGATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000000100000000
..........A----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.25100000000100000000
....ACCGCCA----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2940.25100000000100000000
............................................................................................................................................GGCTGTTCGTCGAGTTGGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.25100000000000001000
...............C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACGATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2940.25100000000010000000
...................................................................................................GCGCATGCGAGTCGACGATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.25100000000100000000
.....................................................................................................GCATGCGAGTCGACGATCCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.25100000000010000000
.........CA----C-------------------------------------------------------------------------------CAAAGCGCATGCGAGTCGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000000100000000
.......................................................................................................ATGCGAGTCGACGATCCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25100000000100000000
...........................................................................................................................................................TGGAGGTAC--------------------------------------------------AACAG---GCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25100000000000001000
...............................................................................................................................................TGTTCGTCGAGTTGGAGGTAC--------------------------------------------------AACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000000100000000
............................................................................................................................................................................................................................................................................................TAGTGGCTGCGACTCAGGGAATCTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.25200000020000000000
.................................................................................................................................................TTCGTCGAGTTGGAGGTAC--------------------------------------------------AACAG---G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2540.25100000000100000000
........................................................................................................TGCGAGTCGACGATCCGGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25100000000100000000
..........................................................................................................CGAGTCGACGATCCGGCCCGCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25100000000100000000
.........................................................................................................................................................................................................................................................................................................TCAGGGAATCTTGGTGGCGCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.18200000010100000000
..................................................................................................................................................................AC--------------------------------------------------AACAG---GCAGAGCTGGAATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.18200000000000002000
...................................................................................................................................................................................................................................................................................................TGCGACTCAGGGAATCTTGGTGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.17200000000200000000
.....................................................................................................................................................................................................................................................................................................CGACTCAGGGAATCTTGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.17200000000200000000
....................................................................................................................................................................................................................................CTGGAATTG------------------------------------------AGCGCTAGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.14100000010000000000
................................................................................................................................................................................................................................AGAGCTGGAATTG------------------------------------------AGCGCTAGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2570.14100000010000000000
.....................................................................................................................................................................................................................................TGGAATTG------------------------------------------AGCGCTAGTGGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.14100000000100000000
..........................................................................................................................................................................................................................................................................................GCTAGTGGCTGCGACTCAGGGAATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.13100000010000000000
...........................................................................................................................................................................................................................................................................................CTAGTGGCTGCGACTCAGGGAATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.13100000010000000000
...........................................................................................................................................................................................................................................TG------------------------------------------AGCGCTAGTGGCTGCGACTCAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.13100000010000000000
..........................................................................................................................................................................................................................................................................................GCTAGTGGCTGCGACTCAGGGAATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.13100000010000000000
...........................................................................................................................................................................................................................................................................................CTAGTGGCTGCGACTCAGGGAATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.13100000010000000000
.......................................................................................................................................................................................................................................................................................AGCGCTAGTGGCTGCGACTCAGGGAATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2980.13100000010000000000
............................................................................................................................................................................................................................................................................................TAGTGGCTGCGACTCAGGGAATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.13100000010000000000
...............................................................................................................................................................................................................................................................................................TGGCTGCGACTCAGGGAATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.11100000010000000000
................................................................................................................................................................................................................................................................................................GGCTGCGACTCAGGGAATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11100000010000000000
..............................................................................................................................................................................................................................GCAGAGCTGGAATTG------------------------------------------AGCGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11100000000000100000
.............................................................................................................................................................................................................................................................................................AGTGGCTGCGACTCAGGGAATCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.11100000000100000000
...............................................................................................................................................................................................................................................................................................TGGCTGCGACTCAGGGAATCTTGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.11100000010000000000
...............................................................................................................................................................................................................................................................................................TGGCTGCGACTCAGGGAATCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.11100000010000000000
...............................................................................................................................................................................................................................................................................................TGGCTGCGACTCAGGGAATCTTGGTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2790.11100000001000000000
................................................................................................................................................................................................................................................................................................GGCTGCGACTCAGGGAATCTTGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2590.11100000000100000000
...............................................................................................................................................................................................................................................................................................TGGCTGCGACTCAGGGAATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.11100000010000000000
...........................................................................................................................................................................................................................................................................................................AGGGAATCTTGGTGGCGCTGGCGG-C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.10100000000100000000
..................................................................................................................................................................AC--------------------------------------------------AACAG---GCAGAGCTGGAATTG------------------------------------------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.09100000000100000000
..........................................................................................................................................................................................................................G---GCAGAGCTGGAATTG------------------------------------------AG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.09100000010000000000
...........................................................................................................................................................................................................................................................................................................AGGGAATCTTGGTGGCGCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.09100000010000000000
........................................................................................................................................................................................................................................................................................................CTCAGGGAATCTTGGTGGCGCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.09100000010000000000
.........................................................................................................................................................................................................................................................................................................TCAGGGAATCTTGGTGGCGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.08100000000100000000
...........................................................................................................................................................................................................................................................................................................AGGGAATCTTGGTGGCGCTTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.08100000000000001000
.....................................................................................................................................................................................................................................................................................................CGACTCAGGGAATCTTGGTGGCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.08100000000100000000
.........................................................................................................................................................................................................................................................................................................TCAGGGAATCTTGGTGGCGCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.08100000000000001000
..................................................................................................................................................................................................................................................................................................CTGCGACTCAGGGAATCTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.08100000000100000000
...................................................................................................................................................................................................................................................................................................TGCGACTCAGGGAATCTTGGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.08100000000100000000
.....................................................................................................................................................................................................................................................................................................CGACTCAGGGAATCTTGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.08100000000100000000
..................................................................................................................................................................................................................................................................................................CTGCGACTCAGGGAATCTTGGTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25120.08100000000100000000
droSec2
GACCAGGAGGAGGGAGAG----------------------------------CCGACAAAGAAAAAACCCGAGGAGGCCGGTTCGACGCCGTCACCAAAGCACATGGGTGCC---------GCCTAGGAATGGTCGGTTGGTCCGCTG-------------------------------------------------------------------------------------------------------------------TACAGCTACATGTT----------------------------------------------------TGGTGACACGGTTT------------------------------------------------------ACTTCATCGTCACCTGGAAGGGATCCCAGTTGGGGAAGCCGTG----------------------------C---CTGTTGAGCAG---AT----------------------------------------------------------------------------------------------------------------------------------------------------------CAAACAT-----------------------------------------------------GT----GCACGACAAGC----------------------------------------------------------------------------------TACTCAT---TGACTTCATTAC---------------GAGCTTGAAGCTACAGGACTA------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................CCGAGGAGGCCGGTTCGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710010
.....................................................................................................ACATGGGTGCC---------GCCTAGGAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410010
..................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCACCTGGAAGGGATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410010
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGGGAAGCCGTG----------------------------C---CTGT.................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410010
......................................................................................................CATGGGTGCC---------GCCTAGGAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------GT----GCACGACAAGC----------------------------------------------------------------------------------TACTCAT---..................................................................2180.1311000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATTAC---------------GAGCTTGAAGCTAC.........................2280.1310001
dm3
CGACGCCGCCT----C-------------------------------------------------------------------------------CAAAGCACATGGGAGTTCACAATTCGGCTCGGGCAGAGCTGGCTCGGCTGCTCGTCGAGTTGTTGGTAC--------------------------------------------------AACAG---GCAGAACTGG------------------------------------------ATGCAACCAACGGTGGCAGCGTGTCAGGGAATCTC-----------------------------------------------GATGGCGGCA-------------------------------ATTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCCCAA------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................GCTCGGGCAGAGCTGGCTCGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
...............................................................................................................TCACAATTCGGCTCGGGCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................ACTGG------------------------------------------ATGCAACCAACGGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CGTGTCAGGGAATCTC-----------------------------------------------GATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.................................................................................................AAGCACATGGGAGTTCACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AGCGTGTCAGGGAATCTC-----------------------------------------------GATGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................ACTGG------------------------------------------ATGCAACCAACGGTGGCAGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATTCGGCTCGGGCAGAGCTGGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TCACAATTCGGCTCGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................CTCGTCGAGTTGTTGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TCAGGGAATCTC-----------------------------------------------GATGGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................G---GCAGAACTGG------------------------------------------ATGCAACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................ATGCAACCAACGGTGGCAGCGTGTCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................................................AACGGTGGCAGCGTGTCAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................C-----------------------------------------------GATGGCGGCA-------------------------------ATTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCC.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAACCAACGGTGGCAGCGTGTCAGGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................................TGGGAGTTCACAATTCGGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................ATGGCGGCA-------------------------------ATTCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCC.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................GGCTGCTCGTCGAGTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................AACTGG------------------------------------------ATGCAACCAACGGTGGCAGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................GGTGGCAGCGTGTCAGGGAATCTC-----------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................CACAATTCGGCTCGGGCAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................CAACCAACGGTGGCAGCGTGTCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................GCGTGTCAGGGAATCTC-----------------------------------------------GATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................AGTTCACAATTCGGCTCGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................................................................ACGGTGGCAGCGTGTCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................................................AACGGTGGCAGCGTGTCAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................ATTCGGCTCGGGCAGAGCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGG------------------------------------------ATGCAACCAACGGTGGCAGCGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................TGTCAGGGAATCTC-----------------------------------------------GATGGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................GTAC--------------------------------------------------AACAG---GCAGAACTGG------------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................AG---GCAGAACTGG------------------------------------------ATC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CATCATCGACA----GGTGCAGCGGCTACATCGACGTCCAGTGGT------------------------------------------------------------GG------------------------TGGCGACACC-----------------------GCTAACGATCAGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCAGCTCTGAAGAATCGAGGAGGAGAGGAAAGCGAT-----------------------------------------------------------------------GGCAGCTCCAACCAGGCGG------------------------------------------CGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAAT----------------------------------------------------------ACAGAAGAAGAAGG-----------------------CG------T---------------GG----CCAGTGAAAGCAGTG------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAGG-----------------------CG------T---------------GG----CCAGTGAAAGC......................2611.0010001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGCAAAT----------------------------------------------------------ACAGAAGAAGAAGG-----------------------C..............................................................2511.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGAATCGAGGAGGAGAGG...........................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..............................................................................................................................................................................AGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCAGCTCTGAAGAA.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCTGAAGAATCGAGGAGG................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.............................ATCGACGTCCAGTGGT------------------------------------------------------------GG------------------------TGGCGACACC-----------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAGCGAT-----------------------------------------------------------------------GGCAGCTCC...................................................................................................................................................................................................................................................................................2111.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACGACGCGAGCCGAGT..................................................................................................................................................................................2011.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGCTCTGAAGAATCGAGGAGGAGA.............................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
......................................................................................................................................................................TAACGATCAGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCA....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTGAATGAGGCAAAT----------------------------------------------------------AC..................................................................................................2111.0010000100
droYak3
CGCTTCTGGGGACA----------------TTGTCGCCCAGCGAA------------------------------------------------------------GG------------------------------CAGC---------AGCGAG--------TG--------AGATGGTCCAAGATCAGGAGAAGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G---AGGAGGAGGAG---CA-------------------------------------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GGA---------------GCAGGA--------------------GGAGGAGGAGCAGGA---GGAGCAGGAGGA---------------GCAGGAGGAGGAGGAGCAGGA------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA---------------GCAGGA--------------------GGAGGAGGAG..........................................................................19200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA---------------GCAGGAGGAGGAGGAG.......................19200.05101000000000
droEug1
AGCCAGAAGAG----TG----------GTA-------------------------------------------------------------------------------------------------------GTGGCACC---------TCCGAGGATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCACC-----------TCTGCCACTATGACAAAATCATCAAAGAAGGGTAAAAGTA----------------------------------------------------------ACAAGCAAAAGACTAGC----------AGTGGGAAGA----TCAGCGAAAGAAAGCCAGAACC---------GAA----------------------GAG---CATGGAGCAGGA---------------GAAGATCGTCGTAGAGGAGGA------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGCGCTGGGA----G-------------------------------------------------------------------------------TGGGCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------ATGGG----------------------------C---GGCCT----------------------------------------------------------------------------------------------------------------------GATGACCAGCCTGGCGG------------------------------------------CGCTGCTCTGGCTGAATGCCTACGAGGCCACGGAGCCGACAGAGGTGGCCATTGGCAAGTCAAGGATTAGC----------CAGGCTATTA----TCA---A---------------------GCGGAAGGAGAAGG-T------GCAGCAGCA---GCTGGAGGAGGG---------------ACAGCAGCAGGAGGAGGAGCA------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GTGAGCCCGAGACACCCG----------------------------------AG------------------------------------------------GGCGA----------------------GG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACGCCA---------------------------------------------------------------AGGCC-----GATGAGGACATCG--------------------TCGAG----------------------------G---ATGATGAGGAG---GT---C----------------------GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA---------------GGAGGTCGTC--------------GA------GGAGGAGGA---TGAGGAGGCCGA---------------GGAGGATGAGGAGGAAGAGGA------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GGTGCCACAGGGCAAC-----------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------GGT----------------------------ATTGCAA------------------TGATTGCGTTAAGAGTCT---------------------------------------------------------------GGGTC-----TGAATAGT------------------------------GCTCAAAACGAC----------------A---AAGATAAGAAGCAGGCAGCG----------------------AAGAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCAAGTTTATT----------GTA------------GA---------------AGAAGA--------------------GGAGGATGAGCCCAC---AGAAGAGGAAGA---------------GGAGGAAGTGGATGAGGAGCA------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCCTGTGGCCA----CC----------ACC----------------------------------------------------------------------------------------------------------------TCGGTACTCAAGAAAAAGAAGG--------------------------------------------------AGCCAACACCTCCACCCGAATCCTCCTCCGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAGAGGAG---AG-------------------------------------------------------CG----------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------GGA---------------GGAGGAGGAG--------------AC------CGAAGAAGA---GACCGAGTCCGA---------------GGAGGAGGAAAGCGAGGAGGA------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTTCGGCGGCA----TCGGGAGCGGCCACATCGA---------------------------------------------------------------------------------------GCTCAAGCGGTGGCGACACC-----------------------GCCGCCGATCAGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGACGGCCCTGAAGAATCGAGGTGGCGAAGAGAGCGAT-----------------------------------------------------------------------GGGAGCTCCAATCAGGCGG------------------------------------------CGTCTCCAGTGCGTAACAGTGCCGCATCGACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAAT----------------------------------------------------------ACAGAAGAAGAAGG-----------------------CG------TGGCCAATGACAGCAGTGACAGCGAAGAAGAAGTTGA------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GGAACTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAG---GCAGAGCATCAACGGATGGTGGAGGAGCATTGAATCTAACCAGCAGCAGTAGCTC----------------------------------------------------CAATGGCATTGAGTATGAGATATTGCGGATGGAGGGC-------------------------------ATCTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------------------------------------------------------------------A----GCATGGCAA-----------------------------------CGATGATGACGAGGA---GGAAGAAGATAC---------------AGAGGAGGAGGAGGAGGAAGA------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ATCCACAGGAG----GAT----------------------------------CC---------------------------------------------CCAAGAGA------------------------------AGCT---------TGGCGA--------------------------------------------------------------------------TGAACCGCCCGAGAA-----------------------------------------------------------------------------GGAGTCC----------GATTCCGAGCTGG--GTGA--------CGAGATAGAGGACTACTTGAAGGATATGCTG-----GAAGACTATTCGG--------------------ATGAC----------------------------GACCTTGAAGAGGAC---TC-------------------------------------------------------GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GGA---------------CTCG--------------------GAAGACGAGCTGGAGGAGATCGAAGAGGAGCA---------------GGAGGAAGAGGTCCCGGACAAGGACAAGCCGGGCAAGTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CGATAGCGACA----A-------------------------------------------------------------------------------TGAGGTAAACGT----------------------TGACGATGAT-------------------------GA--------CGCCGATGGCGGAGCGAAAAAAGG-CCAGGTGAAGGAACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAACAAAGGCGGAGCTGGAAGAGAAGA---GAGAGCCGG-------------------------------AGAAAGAGACAGCTGCTGCTGGCAATGAACT---AAAGGTCATCAAGCCCGGGTCAGCCCCAAACACCGAAGCAGTAGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------A----TCAGGAAAC-----------------------------------GGAAGAGGGAGCCGA---AGAAGAGGAGGC---------------GGCGGAAGAAGGCACTGACGA------------------SizeHit CountTotal NormTotal
No Reads
dp5
TAAAGCTGGAGCAAGAGG----------------------------------CT------------------------------------------------GACGA----------------------GGACAAGAAGCCCTCGGATGTCAAACAAGAGCAGC--------------------------------------------------CACAG---ACGGAATCTGAATCATCTGCGGAGGTGAAACCGAGT----------------------------GTGGCAG------------------CGACAGCGGCGGAGGTCA---------------------------------------------------------------AGGCC-----GAAGCACCCAAGA--------------------CCGAG----------------------------C---CTAAAGAAGAG---GC---C----------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA---------------GACGCCAGAG--------------CT------CAAGGCGGA---ACCCAAGACGGA---------------GGAGGACGACAAAGAAAAGGA------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............GAGG----------------------------------CT------------------------------------------------GACGA----------------------GGACAAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000030000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA---ACCCAAGACGGA---------------GGAGGA.................................2112.0020200000000
..................................................................................................................................................ATGTCAAACAAGAGCAGC--------------------------------------------------CACAG---ACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
................................................................................................................................................................................................................................GGAATCTGAATCATCTGCGGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................ATCTGCGGAGGTGAAACCGAGT----------------------------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CACCCAAGA--------------------CCGAG----------------------------C---CTA..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...............................................................................................................................................................................................................................................................AGT----------------------------GTGGCAG------------------CGACAGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................CGGAGGTGAAACCGAGT----------------------------GTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................A----------------------GGACAAGAAGCCCTCGGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................CA---------------------------------------------------------------AGGCC-----GAAGCACCCAAGA--------------------CC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------------CT------CAAGGCGGA---ACCCAAGAC.........................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGA---ACCCAAGACGGA---------------GGAGGA.................................2511.0010100000000
....GCTGGAGCAAGAGG----------------------------------CT------------------------------------------------GACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGAAGAG---GC---C----------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA---------------..............................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................AATCATCTGCGGAGGTGAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
...........................................................................................................................................................AAGAGCAGC--------------------------------------------------CACAG---ACGGAATCTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010000
................................................................................................................................................................................................................................................................................................................................CGGAGGTCA---------------------------------------------------------------AGGCC-----GAAGCACCCAAGA--------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.AAAGCTGGAGCAAGAGG----------------------------------CT------------------------------------------------GACGA----------------------GGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
........................................................................................................................................................................................................................................................................................................................GACAGCGGCGGAGGTCA---------------------------------------------------------------AGGCC-----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
.........................................................................................................................................................................................................................AG---ACGGAATCTGAATCATCTGCGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000001
.................................................................................................................................GGACAAGAAGCCCTCGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................GACAAGAAGCCCTCGGATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............GAGG----------------------------------CT------------------------------------------------GACGA----------------------GGACAAGAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000001
.........................................................................................................................................................................................................................................ATCATCTGCGGAGGTGAAACCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..........................................................................................................................................................................................................................G---ACGGAATCTGAATCATCTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000
.....................................................................................................................................................TCAAACAAGAGCAGC--------------------------------------------------CACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.AAAGCTGGAGCAAGAGG----------------------------------CT------------------------------------------------GACGA----------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................AAGCCCTCGGATGTCAAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................GTCAAACAAGAGCAGC--------------------------------------------------CACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................GTCAAACAAGAGCAGC--------------------------------------------------CACAG---AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGGA---ACCCAAGACGGA---------------GGAGGAC................................2711.0010001000000
droPer2
TAAAGCTGGAGCAAGAGG----------------------------------CT------------------------------------------------GACGA----------------------GGACAAGAAGCCCTCGGATGTCAAACAAGAGCAGC--------------------------------------------------CACAG---ACGGAATCTGAATCATCTGCGGAGGTGAAACCAAGT----------------------------GTGGCAG------------------CGACAGCGGCGGAGGTCA---------------------------------------------------------------AGGCC-----GAAGCACCCAAGA--------------------CCGAG----------------------------C---CTAAAGAAGAG---GC---C----------------------AAGGAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGAGCTCAAG----------GCGG-----A----ACCCAAGAC-----------------------------------GGAAGAGGACGACAA---AGAAAAGGACAA---------------GGAGAAGGAGAAGGAGAAGGA------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................AGCCCTCGGATGTCAAACAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003300000
....................................................................................................................................CAAGAAGCCCTCGGATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003201000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----A----ACCCAAGAC-----------------------------------GGAAGAGGACGACA......................................................................2512.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAC-----------------------------------GGAAGAGGACGACAA---..................................................................2112.002200000
..................................................................................................................................GACAAGAAGCCCTCGGATGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGCTCAAG----------GCGG-----A----ACCCAAGAC-----------------------------------....................................................................................2612.002200000
..................................................................................................................................................................GC--------------------------------------------------CACAG---ACGGAATCTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
..................................................................................................................................................................GC--------------------------------------------------CACAG---ACGGAATCTGAATCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAA---AGAAAAGGACAA---------------GGAG...................................2111.001010000
..................................................................................................................................GACAAGAAGCCCTCGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGACAA---------------GGAGAAGGAGAAGG.........................2511.001010000
........................................................................................................................................................................................................................................................................................................................GACAGCGGCGGAGGTCA---------------------------------------------------------------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............................................................................................................................................................................................................................................ATCTGCGGAGGTGAAACCAAGT----------------------------GTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAC-----------------------------------GGAAGAGGACGAC.......................................................................1811.001010000
.................................................................................................................................GGACAAGAAGCCCTCGGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................................................................................................................................AGAAGCCCTCGGATGTCAAACAAGAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------AAGGAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGAGCTCAAG----------G.............................................................................................................................................2311.001010000
....................................................................................................................................CAAGAAGCCCTCGGATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---C----------------------AAGGAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGAGCTC...........................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG----------GCGG-----A----ACCCAAGAC-----------------------------------GGAAGAGGAC..........................................................................2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---AGAAAAGGACAA---------------GGAGAAGGAGA............................2611.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAA---AGAAAAGGACAA---------------GGAGAAGGG..............................2611.001100000
......................................................................................................GACGA----------------------GGACAAGAAGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGGACAA---------------GGAGAAGGAGA............................2211.001100000
..........GCAAGAGG----------------------------------CT------------------------------------------------GACGA----------------------GGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAGAAGGAGAAGG...................19200.153000003
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGAAGGAGAAGGAGAAG....................19200.153300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGAAGGAGAAGGA------------------18200.051001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------GGAGAAGGAGAAGGAGAA.....................19200.051000001
droWil2
CAGATGCAAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGATGAAA--------------------ATGGG----------------------------G---ACGATGAGGAG---CA---A----------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----GCA---------------GGAGGACGAC--------------GAGGAGCAGATGCAAGA---AAAAGAGGACGA---------------GGAGGAGGAGAAGCAAGAGGA------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ATCCCGATCAA----A-----------------------------------------------------------------------------------TAGC----------------------------------------------------------------------------------------------------------------------------ACGCGAACGTGCCGTCAA-----------------------------------------------------------------------------AGAGTTT---------------------------------------------------------------GAGC-------------------------------------------------------------------------------------------G-------------------------------------------------------TGAGGAGGTCATCT-GCCCGTTGCAGTCGCGTCTGCCCAGGCGGTACGAGGGCAGG-----------CCGACCTATGCGATATTGGCTGTGGAGCAGAGCAGACGGGACAAGGGGCTGAGCGTGCAGGAGCACAACAACGAAGAGGCAAG--------------------------------------------------------TGA---------------AACG---------GACAAA-----TACGA---GGCGGCGGA---AGATAACGATGA---------------GGATTATGAGGAAGAGGAGGA------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTCGCGTCTGCCCA.......................................................................................................................................................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------------------------------------------TGA---------------AACG---------GACAAA-----TACGA---GGCG..........................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCGTCTGCCCA.......................................................................................................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACGAAGAGGCAAG--------------------------------------------------------TGA---------------AACG---------GA...............................................................................................2711.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGTGGAGCAGAGCAGAC......................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TTT---------------------------------------------------------------GAGC-------------------------------------------------------------------------------------------G-------------------------------------------------------TGAGGAGGTCATC.................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------GGATTATGAGGAAGAGG......................1911.001000000000100000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----TACGA---GGCGGCGGA---AGATAACGA.........................................................2511.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA---GGCGGCGGA---AGATAACGATGA---------------.......................................2411.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................GCCGTCAA-----------------------------------------------------------------------------AGAGTTT---------------------------------------------------------------GAGC-------------------------------------------------------------------------------------------G-------------------------------------------------------TGAGG.........................................................................................................................................................................................................................................................................................................................................2511.001000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGACAAGGGGCTGAG......................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
AGCCGGAGAAG----AGG----------------------------------CT---------------------------------------------GGAGAAGA------------------------------AACC---------GGAGAA--------GA--------AGAGGGAGGAAGAGCTGGAGAAGTAGCCGGAGAAGGATCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGAAGGAGAAGAAGCTGGAGTAGGAGT---CGGAGAAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGGAGAAGAGACTGGAGAA--------------------------------------------------------GAA-------------------------ACCGGAGAAGAAGA-G------GGAGGAAGA---GCTGGAGAAGGA---------------GCTGGAGAAGGAGCCGGAAAA------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CACAACAGGCGCTGG--------CGCCGCATAGTAGCGCACTGGCAGCGCCGCCCACAGCGACCACGCCCCAATCGCCCGATTCGGCGGCAACAGCAGGACAATTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGATAGCAGCAA------------------------------------------------------------------------------------------------------------------------CAGCAGCGATGCATCCTCAATGAAGAAGGC--------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------CAAATGA-----------------------------------------------------AT----GCGTGCCAAGCGCTGGCCAAGATTAGCAGC---AACACCAAGGA---------------GGAGGAGGAG--------------GA------GGCGGCGGA---GGCGGAGCCTGA---------------AGTGGAAACAGAAACAGAGGC------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA---------------GGAGGAGGAG--------------GA------GGCGGCGGA---GG................................................................2511.00110
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAG--------------GA------GGCGGCGGA---..................................................................1930.33110
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------GGAGGAGGAG--------------GA------GGCGGCG.......................................................................2050.20101

Generated: 05/19/2015 at 04:03 PM