ID:

dsi_19568

 Coordinate:

4:954039-954188 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.9 -2.4 -2.3

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Baggins1LINELOA-
mature
star
  1. 2l:19652304-19652319 +
  2. 2l:21568356-21568371 +
  3. 2l:23002460-23002475 +
  4. 2l:23113128-23113143 +
  5. 2l:23178294-23178309 +
  6. 2l:23447266-23447281 +
  7. 3l:23237418-23237433 +
  8. 3l:23365541-23365556 +
  9. 3l:23387462-23387477 +
  10. 3l:23584208-23584223 +
  11. 3l:24029686-24029701 +
  12. dsi_19568  4:954171-954186 +
  13. node_42303:6607-6622 +
  14. node_98929:525-540 +
  15. dsi_31545  node_53690:2644-2659 +
  16. node_75344:4650-4665 +
  17. node_19001:3232-3247 +
  18. node_97367:178-193 +
  19. node_108447:3288-3303 +
  20. node_22417:6272-6287 +

Sense Strand Reads

TACTCTTTGACTGTCTCTCTCTGGCCATCAGTGCGATTAGAAGCTTTTCGGTAATTTAGTTGACTGCGTTCGGTTATCTAAAATAATCCAACTTTGAATTAATCAATGTGAGCAAACTTACACAAATTCCGATAGAAATGCCGACGAAATTGAAGTTGTCTTGGGTCTGAATATTATTATTATTATTAAGTGGGTTTCTATGCGACCCATTCTGATCTATTGTACTACCCCTTCATGGCTCAAAAATCTC
******************************************************************************************************************************************************.(((.(((.(((((.....((((....))))....)))))))).))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 SRR902008
ovaries
 M025
embryo
.........................................................................................................................................................................................................................TATTGTACTACCCCTTCA............... 18 0 20 2.20 44 0 0 44 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TATTGTACTACCCCTTCAT.............. 19 0 20 2.20 44 0 0 0 0 0 44 0 0 0 0 0 0
...................................................................................................................................................................................................TTCTATGCGACCCATTCTGATCTATTG............................ 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCTATTGTACTACCCCTTCA............... 20 0 20 2.00 40 0 0 40 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCT.................. 22 0 19 1.32 25 9 16 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCT.................. 23 0 16 1.31 21 9 11 0 0 0 0 0 0 0 0 1 0
.ACTCTTTGACTGTATCT........................................................................................................................................................................................................................................ 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................TCGGTAATTTAGTTGACTGCGTTCGGT................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................TGAAGTTGTCTTGGGTCTGAATATTA.......................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....CTTTGACTGTCTCTCTCTGAC................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......TGACTGTCTCTCTCTGGCCATCAGTGCGA...................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TATTGTACTACCCCTTCATGGCTCAAA...... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTCATTGTA.......... 30 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................TGGCCATCAGTGCGATTAGAAGCTT............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................AGCTTTTCGGTAATTTAGTTGAC.......................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TTCTATGCGACCCATTCTGATCTATTGT........................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......TTGACTGTCTCTCTCTGGCCATCAGTGCGAT..................................................................................................................................................................................................................... 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................CATCAGTGCGATTAGAAGCTTTTCGGTA..................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TATTATTATTATTATTAAGTGGGT....................................................... 24 0 12 0.83 10 1 1 0 0 6 0 0 1 1 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGTGGGT....................................................... 22 0 20 0.70 14 6 2 0 5 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGTGGGTTTCTA.................................................. 27 0 20 0.65 13 2 0 0 2 8 0 0 0 0 0 1 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGTTTCTA.................................................. 26 0 20 0.55 11 1 0 0 7 3 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCC................... 21 0 19 0.37 7 2 5 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGTGGGA....................................................... 22 1 20 0.35 7 2 2 0 1 2 0 0 0 0 0 0 0
.........................................................................................................................................................................AATATTATTATTATTATTAAGTGGGT....................................................... 26 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTTCA............... 26 0 16 0.31 5 1 4 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GAAATTGTAGTTGTCGTGA...................................................................................... 19 3 20 0.30 6 0 0 0 5 1 0 0 0 0 0 0 0
..................................................................................................................................................AAATTGTAGTTGTCTTG....................................................................................... 17 1 7 0.29 2 0 0 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTTCATG............. 28 0 15 0.27 4 0 1 0 0 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTTC................ 25 0 16 0.25 4 3 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TATTGTACTACCCCTTCATGGCTCAAAGA.... 29 1 20 0.25 5 0 0 0 0 5 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTCATG............. 27 0 18 0.22 4 3 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGT....................................................... 21 0 20 0.20 4 3 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGAAATTGTAGTTGTCGTG....................................................................................... 19 3 20 0.20 4 0 0 0 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTT................. 24 0 16 0.19 3 2 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGCGACCCATTCTGATCTATTGTAC......................... 25 0 17 0.18 3 0 0 0 0 0 0 0 0 0 0 1 2
........................................................................................................................................................................................................TGCGACCCATTCTGATCTATTGTACTACCCC................... 31 0 12 0.17 2 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTCAT.............. 26 0 19 0.16 3 2 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TATTGTACTACCCCTTCATGACTCAAAA..... 28 1 20 0.15 3 0 0 0 1 1 0 0 0 1 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGTGGGTTT..................................................... 24 0 20 0.15 3 0 0 0 1 1 0 0 0 0 0 1 0
.................................................................................................................................................................................TATTATTATTAAGTGGGTTTCTA.................................................. 23 0 20 0.15 3 2 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................GAAATTGTAGTTGTCGTG....................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ACCCATTCTGATCTATTGTACTACCCC................... 27 0 15 0.13 2 0 0 0 1 1 0 0 0 0 0 0 0
...........................................................................................................GTGAGCTAACTTACA................................................................................................................................ 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTC................ 24 0 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTCA............... 25 0 19 0.11 2 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTT................. 23 0 19 0.11 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................ATTATTATTATTAAGTGGGTTTCTA.................................................. 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TATTTTTATTATTAAGTGGGTTTCTA.................................................. 26 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TTATTAAGTGGGTTTC.................................................... 16 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0
...........................................................................................................................................................................TATTATTATTAATATTAAGTGGGTTTC.................................................... 27 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TATTATTATTATTATTAAGTGGGTTT..................................................... 26 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TATTATTATTATTATTAAGTGGGTTTCTA.................................................. 29 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCATTCTGATCTATTGTACTACCCCT.................. 26 0 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ACCCATTCTGATCTATTGTACTACCC.................... 26 0 15 0.07 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................CATTCTGATCTATTGTACTACCCCTT................. 26 0 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CATTCTGATCTATTGTACTACCCCT.................. 25 0 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................TAATTTTATTATTATTAAGTGGGTA...................................................... 25 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTTCAT.............. 27 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCC................... 22 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTACC..................... 20 0 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AAATTGTAGTTGTCTT........................................................................................ 16 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TAATTTTATTATTATTAAGTGGGT....................................................... 24 2 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTATTACCCCTTCATG............. 27 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TATTATTATTATTATTAAGTGGTA....................................................... 24 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTA................ 24 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTT................ 24 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGTTA..................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATTAAGTGGGTTTCTCT................................................. 18 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................GCCATTCTGATCTTTTGT........................... 18 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGTAA..................................................... 23 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TAATTTTATTATTATTAAGTGGGA....................................................... 24 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGTGGGTTTATA.................................................. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTATTATTATTAAGTGGGTT...................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGTGG......................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGTGGG........................................................ 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGTACTACCTCTTCATGAATCAAAA..... 26 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CTATTGTACTACCCCT.................. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GCGACCCATTCTGATCT................................ 17 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................TTGTACTACCTCTTCATGAATCAAAAATC.. 29 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGTACTACCCCTTCATGACTCAAAAA.... 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................TTATTATTATTAAGTGGGTTTCTATG................................................ 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTATTATTATTAAGTGGGA....................................................... 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ATTGTAGTTGTCTTG....................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGTACTACCCCTTCATG............. 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGTA...................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGTGGGTA...................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GACCCATTCTGATCTATT............................. 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................TTATTATTATTATTAAGGGGGA....................................................... 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGTTTCCA.................................................. 26 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TATTATTATTAAGTGGGTT...................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGA....................................................... 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGTTT..................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................TCTGATCTATTGTACTACCCTA.................. 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ATTATTATTATTATTAAGTGGGTT...................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGCTTCTA.................................................. 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TATTATTATTATTAAGTGGGTTTA.................................................... 24 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TATTATTATTAAGTGGGTTTCTATG................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................TTCTGATCTATTGTACTAAAA.................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ATGAGAAACTGACAGAGAGAGACCGGTAGTCACGCTAATCTTCGAAAAGCCATTAAATCAACTGACGCAAGCCAATAGATTTTATTAGGTTGAAACTTAATTAGTTACACTCGTTTGAATGTGTTTAAGGCTATCTTTACGGCTGCTTTAACTTCAACAGAACCCAGACTTATAATAATAATAATAATTCACCCAAAGATACGCTGGGTAAGACTAGATAACATGATGGGGAAGTACCGAGTTTTTAGAG
****************************************************.(((.(((.(((((.....((((....))))....)))))))).))).****************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 O002
Head
 M023
head
 M024
male body		 SRR902008
ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
.........................................................................................................................................................................................................CGCTGGGTAAGACTAGATAACATGAT....................... 26 0 17 5.41 92 61 13 12 2 0 0 0 0 1 1 1 1
............................................................................................................................................................................................................TGGGTAAGACTAGATAACATGAT....................... 23 0 20 3.70 74 62 5 6 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................GGGTAAGACTAGATAACATGATGG..................... 24 0 15 2.53 38 28 0 10 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGGGTAAGACTAGATAACATGAT....................... 25 0 17 2.53 43 30 4 6 2 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................CGGTGGGTAAGACTAGATAACATGAT....................... 26 1 18 2.00 36 35 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTGGGTAAGACTAGATAACATGAT....................... 24 1 20 1.15 23 22 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TTCGCTGGGTAAGACTAGATAACAT.......................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGTGGGTAAGACTAGATAACATGAT....................... 25 1 18 1.00 18 17 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CCAGGCTTATAATAATAA..................................................................... 18 1 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
.............................................................................................................................................................................................................................TATGATGGGGAAGTACCGAGT........ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACATGATGGGGAAGTACCGAGTTTTT.... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................TTAACTTCAACAGAACCCAGACTTAT............................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GGCTATCTTTACGGCTGCTTT..................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................GGGTAAGACTAGATAACATGAT....................... 22 0 20 1.00 20 5 1 1 0 2 11 0 0 0 0 0 0
........................................................................................................................................................................................................................GATAACATGATGGGGAATTACCGAGT........ 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGGGTAAGACTAGATAACATGAT....................... 24 0 18 0.72 13 10 0 0 0 0 0 0 0 0 3 0 0
..............................................................................................................................................................................................................GGTAAGACTAGATAACATGATGG..................... 23 0 15 0.60 9 3 0 6 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGCTGGGTAAGACTAGATAACATG......................... 24 0 17 0.53 9 0 0 0 0 0 9 0 0 0 0 0 0
...............................................................................................................................................................................................................GTAAGACTAGATAACATGATGG..................... 22 0 15 0.47 7 0 0 4 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGCTGGGTAAGACTAGATAACAT.......................... 23 0 17 0.35 6 0 6 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGGGTAAGACTAGATAACATGATGG..................... 25 1 15 0.33 5 4 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGTAAGACTAGATAACATGATGGGGA.................. 27 0 15 0.27 4 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCTGGGTAAGACTAGATAACATGAT....................... 26 1 17 0.24 4 2 1 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................TGTGGGTAAGACTAGATAACATGAT....................... 25 2 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGTAAGACTAGATAACATGATGG..................... 25 0 15 0.20 3 2 0 1 0 0 0 0 0 0 0 0 0
..........................................................CAAGTGACGCAAGCC................................................................................................................................................................................. 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACGCTGGGTAAGACTAGATAACATGAT....................... 27 0 17 0.18 3 2 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGGGAAGTACCCAGGTTTTA... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGGGTAAGACTAGATAACATGATGGGGA.................. 29 0 13 0.15 2 0 0 0 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................ATAATAATAATAATTCACCCAAAGATA................................................. 27 0 20 0.15 3 0 0 0 2 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................AGATTCGCTGGGTAA....................................... 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGTAAGACTAGATAACATGATGGGGAA................. 29 0 15 0.13 2 0 0 0 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................AAGACTAGATAACATGATGGGGAAGT............... 26 0 16 0.13 2 0 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................AGACTAGATAACATGATGGGGAAGTAC............. 27 0 18 0.11 2 0 0 0 0 0 0 0 0 2 0 0 0
................................................................................................................................................................................................................TAAGACTAGATAACATGAT....................... 19 0 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTAAGACTAGATAACATGAT....................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AATAATAATAATTCACCCAAAGATAC................................................ 26 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0
............................................................................................................................................................................................................TGGGTAAGACTAGATAACATTAT....................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................AAGTCAACGGACGCAAGCGA................................................................................................................................................................................ 20 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGCGTAAGACTAAATAACATGATGGGGAA................. 30 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGGGTAAGACTAGATAACATGATGG..................... 26 0 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGGGTAAGACTAGATAACATGATGGG.................... 26 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGTAAGACTAGATAACATGATGGG.................... 25 0 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................GTAAGACTAGATAACATGATGGGGA.................. 25 0 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GGTAAGACTAGATAACATGATGGGGA.................. 26 0 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................GGGTAAGACTAGATAACGTGATGG..................... 24 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AAGACTACATAACATGATGGGGAAGT............... 26 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AAGACTAGATAACATGATGGGGA.................. 23 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
...............AGAGAGACTGGTAGTTA.......................................................................................................................................................................................................................... 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CCCGCTGGGTAAGACTAGATAACATGAT....................... 28 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AAAGACTAGATAACATGATGGGGAAGT............... 27 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCGGGGTAAGACTAGATAACATGAT....................... 25 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGCTGGGTAAGACTGGATAACATGAT....................... 26 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGGGTAAGACTAGATAACAT.......................... 22 0 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGCTGGGTAAGACTAGATAACATT......................... 24 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AGCTGGGTAAGACTAGATAACATGAT....................... 26 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGCTGGGTAAGACTAGATAACAAGAT....................... 26 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCGCTGGGTAAGACTAGATAACATGAT....................... 27 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACGCTGGGTAAGACTAGATAACATGA........................ 26 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGCGTAAGACTAGATAACATGAT....................... 25 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGGTTAAGACTAGATAACATGAT....................... 25 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TAGCTGAGTAAGACTAGATAACATGAT....................... 27 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGTGGGTAAGGCTAGATAACATGAT....................... 25 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGGTGGGTAAGACTAGATAACAT.......................... 23 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GCTGGGTAAGATTAGATAACAT.......................... 22 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGTGGGTAAGACTAGATAACATGA........................ 24 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACGCTGGGTAAGACTAGATA.............................. 20 0 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................AGACTAGATAACATGATGGGGAAGT............... 25 0 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................AGGTGGGTAAGACTAGATAACATGAT....................... 26 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGACTAGATAACATGATGGGGAAGTA.............. 26 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TCGCTGGGTAAGACTAGATA.............................. 20 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGACTAGATAACATGATGG..................... 19 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGTAAGACTAGATAACATGATTG..................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGTAAGACTAGATAACATGA........................ 22 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATAATAATAATTCACCCAAAGAT.................................................. 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATAAGACTAGATAACATGATG...................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGACTAGATAACATGAT....................... 17 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GGTAAGACTAGATAACATGAT....................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GACTAGATAACATGAT....................... 16 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGCTGGGTAAGACTAGACAAGT........................... 22 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AGAGAGACGCTGGGTA........................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGTGGGTAAGACTAGATAACATGAT....................... 26 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGTAAGGCTAGATAACATGAT....................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGTAAGACTAGATAACAGGAT....................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGAGTAAGACTAGATAACATGAT....................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CTGGGTAAGACTAGACAAGT........................... 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AAAGACTAGATAACATGAT....................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGTAAGACTAGATAACAT.......................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAGTAAGACTAGATAACATGAT....................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGGTAAGACTAGATAACA........................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGGTAAGACTAGATA.............................. 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AATTCACCCAAAGATA................................................. 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:953989-954238 + dsi_19568 TACTCTTTG----ACTGTCTCTCTCTGGCCATCAGTGCGATTAGA---------AGCTTTTCGGTAATTTAGTTGACTGCGTTCGGTTATCTAAAATAATC---------------CAACTTTGAATTAATCAATGTGAGCAAACTTA-CACAAATTCCGATAGAAATGCCGACGAAA-------TTGAAGTTGTCTTGGGTCTGAATATTATTATTATTATTAAGTGGGTTTCTATGCGACCCATTCTGATCTATTGTACTACCCCTTCATGGCTCAAAAATCTC
droSec2 scaffold_40:217445-217694 + TACTCTTTG----ACTGTCTCTCTCTGGCCATCAGTGCGATTAGA---------AGCTTTTCGGTAATTTACTTGACTGCGTTCGGTTATCTAAAATAATC---------------CAACTTTGAATTAATCAATGTGAGCAAACTTA-CACAAATTCCGATAGAAATGCTGACGAAA-------TTGAAGTTGTCTTGGGTCTGATTATTATTATTATTATTAAGTGGGTTTCTATGCGACCCATTCTGATCTATTGTACTACCCCTTCATGACTCAAAGATCTC
dm3 chr4:1169345-1169521 + TTTTCTTTGACTGTCTCTCTCTCTCTGGTCATCAGTGCGATTAGC---------AGCTTTTCGGTGATTTAATTTACGGCGTTCGGTTATCTTAAATAATC---------------AAACTTTGAATTAATCAAAGTCAGCAAACTGA-CACAAAAGCCGATAGAAATGCCTACGAAA-------TTATAATTGTCTTGGGG-TGAATAT----------------------------------------------------------------------------
droEre2 scaffold_4512:77723-77834 - TTTTTTTGG----CCTGTCGTTCTCTGGTCATCAGTTTGATTAGTACGTGAGGTAGCTCTTTGCTGATTTAATTGACTGCGTTGACCTATGTCAGGTCGTTCTCAG-------------------CTTAATCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000489546:308-383 + TTTTCTTGA----TCTGTCTCTTTATGGTCATCAGTGCGCTTAGCATGTGATATAGCTCTTCGCACATTTGATTGACTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302707:667581-667657 - TTTTCTTGA----TCTCTCTGTCTCTGGTCATCAGTGCGGTTAGCACGTGAGGTAGCTCTTCGCACATTTGATTGACTACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_1052:4205-4373 - TTTTCTTGA----TCTGTCTGTCTCTGGTCATCAGTGCGGTTAGCACGTGAGGTAGCTCTTCGCAC-------------CG------TAAATCAGGCCGTCTTCTACTCGGCATCGTAAATTGTAATTAACCAAAGTGAGAAAATTTCCCGCAAAATTTGA--GAAGT---GAGGAAATTTCAAATTAAAATT-----------------------------------------------------------------------------------------TTTT
droBip1 scf7180000391589:1576-1652 - TTTTCTTGA----TCTCTCTGTCTCTGGTCATCAGTGCGGTTAGCACGTGAGGTAGCTCTTCGCACATTTGATTGACTACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004594:13676-13818 + TTTTCTTGA----TCTGTCTGTCTCTGGTCATCAGTGCGGTTAACACATAAGGTAGCTCTTCCCACATTTGATTGACTACGACGACCTAAGTCAGGTCGTCTTCTCCTCGGCATCGTAAATTGTAATTAATCAAAGTGAAAAAATTT-------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACTCTTTG----ACTGTCTCTCTCTGGCCATCAGTGCGATTAGA---------AGCTTTTCGGTAATTTAGTTGACTGCGTTCGGTTATCTAAAATAATC---------------CAACTTTGAATTAATCAATGTGAGCAAACTTA-CACAAATTCCGATAGAAATGCCGACGAAA-------TTGAAGTTGTCTTGGGTCTGAATATTATTATTATTATTAAGTGGGTTTCTATGCGACCCATTCTGATCTATTGTACTACCCCTTCATGGCTCAAAAATCTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................TATTGTACTACCCCTTCA...............18202.2044000044000000000000
.............................................................................................................................................................................................................................................................TATTGTACTACCCCTTCAT..............19202.2044000004400000000000
.......................................................................................................................................................................................................................................TTCTATGCGACCCATTCTGATCTATTG............................2712.00200000000200000000
...........................................................................................................................................................................................................................................................TCTATTGTACTACCCCTTCA...............20202.0040000040000000000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCT..................22191.3225000000160900000000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCT..................23161.3121000000110900010000
............................................................TCGGTAATTTAGTTGACTGCGTTCGGT.......................................................................................................................................................................................................2711.00100000000000001000
..........................................................................................................................................................................................TGAAGTTGTCTTGGGTCTGAATATTA..........................................................................2611.00100000000100000000
.......TG----ACTGTCTCTCTCTGGCCATCAGTGCGA......................................................................................................................................................................................................................................................2911.00100000010000000000
.............................................................................................................................................................................................................................................................TATTGTACTACCCCTTCATGGCTCAAA......2711.00100010000000000000
.........................TGGCCATCAGTGCGATTAGA---------AGCTT...................................................................................................................................................................................................................................2511.00100000000001000000
......................................................AGCTTTTCGGTAATTTAGTTGAC.................................................................................................................................................................................................................2311.00110000000000000000
.......................................................................................................................................................................................................................................TTCTATGCGACCCATTCTGATCTATTGT...........................2811.00100000000100000000
......TTG----ACTGTCTCTCTCTGGCCATCAGTGCGAT.....................................................................................................................................................................................................................................................3111.00100000010000000000
.............................CATCAGTGCGATTAGA---------AGCTTTTCGGTA............................................................................................................................................................................................................................2811.00100000010000000000
...............................................................................................................................................................................................................TATTATTATTATTATTAAGTGGGT.......................................................24120.831000010016101000000
.................................................................................................................................................................................................................TTATTATTATTATTAAGTGGGT.......................................................22200.701400000021650000000
.................................................................................................................................................................................................................TTATTATTATTATTAAGTGGGTTTCTA..................................................27200.651300000008220010000
..................................................................................................................................................................................................................TATTATTATTATTAAGTGGGTTTCTA..................................................26200.551100000003170000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCC...................21190.37700000050200000000
.................................................................................................................................................................................................................TTATTATTATTATTAAGTGGGA.......................................................22200.35700000022210000000
.............................................................................................................................................................................................................AATATTATTATTATTATTAAGTGGGT.......................................................2630.33100000001000000000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTTCA...............26160.31500000040100000000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTTCATG.............28150.27400000013000000000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTTC................25160.25400000000310000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTCATG.............27180.22400000010300000000
..................................................................................................................................................................................................................TATTATTATTATTAAGTGGGT.......................................................21200.20400000010300000000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTT.................24160.19300000010200000000
............................................................................................................................................................................................................................................TGCGACCCATTCTGATCTATTGTAC.........................25170.18300200000000010000
............................................................................................................................................................................................................................................TGCGACCCATTCTGATCTATTGTACTACCCC...................31120.17200000010100000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTCAT..............26190.16300000010200000000
.................................................................................................................................................................................................................TTATTATTATTATTAAGTGGGTTT.....................................................24200.15300000001010010000
.....................................................................................................................................................................................................................TATTATTATTAAGTGGGTTTCTA..................................................23200.15300000001200000000
................................................................................................................................................................................................................................................ACCCATTCTGATCTATTGTACTACCCC...................27150.13200000001010000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTC................24190.11200000000200000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTCA...............25190.11200000010100000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTT.................23190.11200000000200000000
...................................................................................................................................................................................................................ATTATTATTATTAAGTGGGTTTCTA..................................................25200.10200000020000000000
..........................................................................................................................................................................................................................TTATTAAGTGGGTTTC....................................................16200.10200000000002000000
...............................................................................................................................................................................................................TATTATTATTATTATTAAGTGGGTTT.....................................................26120.08100000001000000000
...............................................................................................................................................................................................................TATTATTATTATTATTAAGTGGGTTTCTA..................................................29120.08100000000010000000
..................................................................................................................................................................................................................................................CCATTCTGATCTATTGTACTACCCCT..................26150.07100000000010000000
................................................................................................................................................................................................................................................ACCCATTCTGATCTATTGTACTACCC....................26150.07100000000000010000
...................................................................................................................................................................................................................................................CATTCTGATCTATTGTACTACCCCTT.................26150.07100000001000000000
...................................................................................................................................................................................................................................................CATTCTGATCTATTGTACTACCCCT..................25150.07100000001000000000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCCTTCAT..............27160.06100000000100000000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTACCCC...................22160.06100000010000000000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTACC.....................20160.06100000010000000000
...............................................................................................................................................................................................................TATTATTATTATTATTAAGTGGTA.......................................................24190.05100000000100000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTA................24190.05100000000100000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCCTTT................24190.05100000010000000000
..................................................................................................................................................................................................................TATTATTATTATTAAGTGGGTTA.....................................................23200.05100000001000000000
..................................................................................................................................................................................................................TATTATTATTATTAAGTGGGTAA.....................................................23200.05100000000010000000
....................................................................................................................................................................................................................TTATTATTATTAAGTGGGTT......................................................20200.05100000001000000000
.................................................................................................................................................................................................................TTATTATTATTATTAAGTGG.........................................................20200.05100000010000000000
.................................................................................................................................................................................................................TTATTATTATTATTAAGTGGG........................................................21200.05100000001000000000
............................................................................................................................................................................................................................................................CTATTGTACTACCCCT..................16200.05100000010000000000
.............................................................................................................................................................................................................................................GCGACCCATTCTGATCT................................17200.05100000000001000000
....................................................................................................................................................................................................................TTATTATTATTAAGTGGGTTTCTATG................................................26200.05100000000010000000
....................................................................................................................................................................................................................TTATTATTATTAAGTGGGA.......................................................19200.05100000010000000000
...............................................................................................................................................................................................................................................................TTGTACTACCCCTTCATG.............18200.05100000000001000000
..................................................................................................................................................................................................................TATTATTATTATTAAGTGGGTA......................................................22200.05100000000100000000
.................................................................................................................................................................................................................TTATTATTATTATTAAGTGGGTA......................................................23200.05100000010000000000
...............................................................................................................................................................................................................................................GACCCATTCTGATCTATT.............................18200.05100000000001000000
.....................................................................................................................................................................................................................TATTATTATTAAGTGGGTT......................................................19200.05100000000010000000
..................................................................................................................................................................................................................TATTATTATTATTAAGTGGGA.......................................................21200.05100000001000000000
..................................................................................................................................................................................................................TATTATTATTATTAAGTGGGTTT.....................................................23200.05100000000001000000
......................................................................................................................................................................................................................................................TCTGATCTATTGTACTACCCTA..................22200.05100000000100000000
................................................................................................................................................................................................................ATTATTATTATTATTAAGTGGGTT......................................................24200.05100000000010000000
..................................................................................................................................................................................................................TATTATTATTATTAAGTGGGTTTA....................................................24200.05100000000010000000
.....................................................................................................................................................................................................................TATTATTATTAAGTGGGTTTCTATG................................................25200.05100000000000010000
.....................................................................................................................................................................................................................................................TTCTGATCTATTGTACTAAAA....................21200.05100000000000010000
droSec2
TACTCTTTG----ACTGTCTCTCTCTGGCCATCAGTGCGATTAGA---------AGCTTTTCGGTAATTTACTTGACTGCGTTCGGTTATCTAAAATAATC---------------CAACTTTGAATTAATCAATGTGAGCAAACTTA-CACAAATTCCGATAGAAATGCTGACGAAA-------TTGAAGTTGTCTTGGGTCTGATTATTATTATTATTATTAAGTGGGTTTCTATGCGACCCATTCTGATCTATTGTACTACCCCTTCATGACTCAAAGATCTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................TATTGTACTACCCCTTCATGAC...........22200.1022000
...................................................................................................................................................................................................................................................CATTCTGATCTATTGTACTAC......................21120.0810010
............................................................................................................................................................................................................................................................CTATTGTACTACCCCTTCATGACT..........24200.0511000
.............................................................................................................................................................................................................................................................TATTGTACTACCCCTTCATGACTC.........24200.0511000
..................................................................................................................................................................................................................................................................TACTACCCCTTCATGACTCAAAGATC..26200.0511000
.............................................................................................................................................................................................................................................................TATTGTACTACCCCTTCATG.............20200.0511000
dm3
TTTTCTTTGACTGTCTCTCTCTCTCTGGTCATCAGTGCGATTAGC---------AGCTTTTCGGTGATTTAATTTACGGCGTTCGGTTATCTTAAATAATC---------------AAACTTTGAATTAATCAAAGTCAGCAAACTGA-CACAAAAGCCGATAGAAATGCCTACGAAA-------TTATAATTGTCTTGGGG-TGAATAT----------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................TTAGC---------AGCTTTTCGGTGATTTAATT....................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TACGGCGTTCGGTTATCTTAAA..............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................CAGCAAACTGA-CACAAAAGCCGATAGAAA.......................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTAGC---------AGCTTTTCGGTGATTTAATTTAC.................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................TTTCGGTGATTTAATTTACGG...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GGCGTTCGGTTATCTTAAATAAT..........................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCTTTGACTGTCTCTCTCTCTCTGGTCA...............................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AAAAGCCGATAGAAATGCCT..................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GTCATCAGTGCGATTAGC---------AGC.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCTTTGACTGTCTCTCTCGTG......................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTTTTTGG----CCTGTCGTTCTCTGGTCATCAGTTTGATTAGTACGTGAGGTAGCTCTTTGCTGATTTAATTGACTGCGTTGACCTATGTCAGGTCGTTCTCAG-------------------CTTAATCAAT-------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droEle1
TTTTCTTGA----TCTGTCTCTTTATGGTCATCAGTGCGCTTAGCATGTGATATAGCTCTTCGCACATTTGATTGACTGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTTTCTTGA----TCTCTCTGTCTCTGGTCATCAGTGCGGTTAGCACGTGAGGTAGCTCTTCGCACATTTGATTGACTACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTTTCTTGA----TCTGTCTGTCTCTGGTCATCAGTGCGGTTAGCACGTGAGGTAGCTCTTCGCAC-------------CG------TAAATCAGGCCGTCTTCTACTCGGCATCGTAAATTGTAATTAACCAAAGTGAGAAAATTTCCCGCAAAATTTGA--GAAGT---GAGGAAATTTCAAATTAAAATT-----------------------------------------------------------------------------------------TTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................TGCGGTTAGCACGTGAGGTAGCTC...................................................................................................................................................................................................................................24170.061000010
...................................TGCGGTTAGCACGTGAGGTAGCTCT..................................................................................................................................................................................................................................25170.061100000
........................................TTAGCACGTGAGGTAGCTCTTCGC..............................................................................................................................................................................................................................24190.051010000
...........................................GCACGTGAGGTAGCTCTTCGC..............................................................................................................................................................................................................................21200.051000001
......TGA----TCTGTCTGTCTCTGGTCATCAG...........................................................................................................................................................................................................................................................25200.051010000
droBip1
TTTTCTTGA----TCTCTCTGTCTCTGGTCATCAGTGCGGTTAGCACGTGAGGTAGCTCTTCGCACATTTGATTGACTACG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droWil2
TTTTCTTGA----TCTGTCTGTCTCTGGTCATCAGTGCGGTTAACACATAAGGTAGCTCTTCCCACATTTGATTGACTACGACGACCTAAGTCAGGTCGTCTTCTCCTCGGCATCGTAAATTGTAATTAATCAAAGTGAAAAAATTT-------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................TCTGGTCATCAGTGCGGTTA...................................................................................................................................................................................................................................................2050.20100010

Generated: 05/18/2015 at 03:26 PM